CW22025

R Markdown

This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.

When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:

Genes <- data.frame(
  IRX4 = c(11, 13, 2, 1), 
  OCT4 = c(10, 13, 4, 3), 
  PAX6 = c(1, 3, 10, 9),  # Fixed 'C' to 'c'
  row.names = c("patient1", "patient2", "patient3", "patient4")
)


print(Genes)

##          IRX4 OCT4 PAX6
## patient1   11   10    1
## patient2   13   13    3
## patient3    2    4   10
## patient4    1    3    9

manhattan_dist <- dist(Genes, method = "manhattan")
print(manhattan_dist)

##          patient1 patient2 patient3
## patient2        7                  
## patient3       24       27         
## patient4       25       28        3

euclidean_dist <- dist(Genes, method = "euclidean")
print(euclidean_dist)

##           patient1  patient2  patient3
## patient2  4.123106                    
## patient3 14.071247 15.842980          
## patient4 14.594520 16.733201  1.732051

Including Plots

You can also embed plots, for example:

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.