getwd()
## [1] "C:/Users/Julkowska Lab/Desktop/R codes by Maryam/202501_ICP_RSA_ASC_H2O2_treatments_two_tomatoes"
list.files(pattern = ".csv")
## [1] "20250106_ICP_RSA_ASC_H2O2_Treatments_FOR_R.csv"
ICP <- read.csv("20250106_ICP_RSA_ASC_H2O2_Treatments_FOR_R.csv")
ICP
colnames(ICP)
## [1] "Scanning.number" "Accession"
## [3] "Condition" "Tissue"
## [5] "DW.g" "DW.mg"
## [7] "Na.con.mg.mg.dry.weight" "K.con..mg.mg.dry.weight"
## [9] "Na.K.ratio"
ICP$All.ID<-paste(ICP$Accession, ICP$Condition, ICP$Tissue, sep="_")
ICP
library(ggplot2)
library(ggpubr)
library(multcompView)
## Warning: package 'multcompView' was built under R version 4.3.2
aov(Na.con.mg.mg.dry.weight ~ All.ID, data = ICP)
## Call:
## aov(formula = Na.con.mg.mg.dry.weight ~ All.ID, data = ICP)
##
## Terms:
## All.ID Residuals
## Sum of Squares 97209.58 6848.90
## Deg. of Freedom 23 128
##
## Residual standard error: 7.314851
## Estimated effects may be unbalanced
Output <- TukeyHSD(aov(Na.con.mg.mg.dry.weight ~ All.ID, data = ICP))
Output
## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Na.con.mg.mg.dry.weight ~ All.ID, data = ICP)
##
## $All.ID
## diff lwr upr p adj
## LA1511_C_SH-LA1511_C_RO 0.216642016 -15.486562 15.919846 1.0000000
## LA1511_C+ASC_RO-LA1511_C_RO -1.376556109 -17.079760 14.326648 1.0000000
## LA1511_C+ASC_SH-LA1511_C_RO -0.283165652 -15.986370 15.420039 1.0000000
## LA1511_C+ROS_RO-LA1511_C_RO -0.802391574 -16.505596 14.900813 1.0000000
## LA1511_C+ROS_SH-LA1511_C_RO -0.409962172 -16.113167 15.293242 1.0000000
## LA1511_S_RO-LA1511_C_RO 32.946910107 17.243706 48.650114 0.0000000
## LA1511_S_SH-LA1511_C_RO 57.222226498 41.519022 72.925431 0.0000000
## LA1511_S+ASC_RO-LA1511_C_RO 32.228644189 17.096658 47.360631 0.0000000
## LA1511_S+ASC_SH-LA1511_C_RO 57.665390453 42.533404 72.797377 0.0000000
## LA1511_S+ROS_RO-LA1511_C_RO 36.154754347 21.022768 51.286741 0.0000000
## LA1511_S+ROS_SH-LA1511_C_RO 57.227333159 42.095347 72.359320 0.0000000
## M248_C_RO-LA1511_C_RO -1.060757733 -16.763962 14.642447 1.0000000
## M248_C_SH-LA1511_C_RO 0.079577921 -15.623626 15.782782 1.0000000
## M248_C+ASC_RO-LA1511_C_RO -1.336131668 -17.039336 14.367073 1.0000000
## M248_C+ASC_SH-LA1511_C_RO -0.151046991 -15.854251 15.552157 1.0000000
## M248_C+ROS_RO-LA1511_C_RO -0.672190933 -16.375395 15.031013 1.0000000
## M248_C+ROS_SH-LA1511_C_RO 0.079429765 -15.623775 15.782634 1.0000000
## M248_S_RO-LA1511_C_RO 33.953040792 18.249836 49.656245 0.0000000
## M248_S_SH-LA1511_C_RO 59.864605816 44.161401 75.567810 0.0000000
## M248_S+ASC_RO-LA1511_C_RO 39.950538865 24.818553 55.082525 0.0000000
## M248_S+ASC_SH-LA1511_C_RO 58.671572572 43.539586 73.803559 0.0000000
## M248_S+ROS_RO-LA1511_C_RO 32.554158173 17.422172 47.686145 0.0000000
## M248_S+ROS_SH-LA1511_C_RO 63.260202645 48.128216 78.392189 0.0000000
## LA1511_C+ASC_RO-LA1511_C_SH -1.593198125 -17.296402 14.110006 1.0000000
## LA1511_C+ASC_SH-LA1511_C_SH -0.499807668 -16.203012 15.203397 1.0000000
## LA1511_C+ROS_RO-LA1511_C_SH -1.019033590 -16.722238 14.684171 1.0000000
## LA1511_C+ROS_SH-LA1511_C_SH -0.626604188 -16.329809 15.076600 1.0000000
## LA1511_S_RO-LA1511_C_SH 32.730268091 17.027064 48.433472 0.0000000
## LA1511_S_SH-LA1511_C_SH 57.005584482 41.302380 72.708789 0.0000000
## LA1511_S+ASC_RO-LA1511_C_SH 32.012002173 16.880016 47.143989 0.0000000
## LA1511_S+ASC_SH-LA1511_C_SH 57.448748437 42.316762 72.580735 0.0000000
## LA1511_S+ROS_RO-LA1511_C_SH 35.938112332 20.806126 51.070099 0.0000000
## LA1511_S+ROS_SH-LA1511_C_SH 57.010691143 41.878705 72.142677 0.0000000
## M248_C_RO-LA1511_C_SH -1.277399749 -16.980604 14.425805 1.0000000
## M248_C_SH-LA1511_C_SH -0.137064095 -15.840268 15.566140 1.0000000
## M248_C+ASC_RO-LA1511_C_SH -1.552773683 -17.255978 14.150431 1.0000000
## M248_C+ASC_SH-LA1511_C_SH -0.367689007 -16.070893 15.335515 1.0000000
## M248_C+ROS_RO-LA1511_C_SH -0.888832949 -16.592037 14.814371 1.0000000
## M248_C+ROS_SH-LA1511_C_SH -0.137212251 -15.840417 15.565992 1.0000000
## M248_S_RO-LA1511_C_SH 33.736398776 18.033194 49.439603 0.0000000
## M248_S_SH-LA1511_C_SH 59.647963801 43.944759 75.351168 0.0000000
## M248_S+ASC_RO-LA1511_C_SH 39.733896849 24.601911 54.865883 0.0000000
## M248_S+ASC_SH-LA1511_C_SH 58.454930556 43.322944 73.586917 0.0000000
## M248_S+ROS_RO-LA1511_C_SH 32.337516157 17.205530 47.469503 0.0000000
## M248_S+ROS_SH-LA1511_C_SH 63.043560629 47.911574 78.175547 0.0000000
## LA1511_C+ASC_SH-LA1511_C+ASC_RO 1.093390458 -14.609814 16.796595 1.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_RO 0.574164535 -15.129040 16.277369 1.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_RO 0.966593937 -14.736610 16.669798 1.0000000
## LA1511_S_RO-LA1511_C+ASC_RO 34.323466216 18.620262 50.026671 0.0000000
## LA1511_S_SH-LA1511_C+ASC_RO 58.598782608 42.895578 74.301987 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_RO 33.605200298 18.473214 48.737187 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ASC_RO 59.041946563 43.909960 74.173933 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_RO 37.531310457 22.399324 52.663297 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ASC_RO 58.603889268 43.471903 73.735876 0.0000000
## M248_C_RO-LA1511_C+ASC_RO 0.315798376 -15.387406 16.019003 1.0000000
## M248_C_SH-LA1511_C+ASC_RO 1.456134031 -14.247070 17.159338 1.0000000
## M248_C+ASC_RO-LA1511_C+ASC_RO 0.040424442 -15.662780 15.743629 1.0000000
## M248_C+ASC_SH-LA1511_C+ASC_RO 1.225509119 -14.477695 16.928713 1.0000000
## M248_C+ROS_RO-LA1511_C+ASC_RO 0.704365176 -14.998839 16.407570 1.0000000
## M248_C+ROS_SH-LA1511_C+ASC_RO 1.455985875 -14.247218 17.159190 1.0000000
## M248_S_RO-LA1511_C+ASC_RO 35.329596901 19.626393 51.032801 0.0000000
## M248_S_SH-LA1511_C+ASC_RO 61.241161926 45.537958 76.944366 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_RO 41.327094974 26.195109 56.459081 0.0000000
## M248_S+ASC_SH-LA1511_C+ASC_RO 60.048128681 44.916142 75.180115 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_RO 33.930714283 18.798728 49.062701 0.0000000
## M248_S+ROS_SH-LA1511_C+ASC_RO 64.636758754 49.504772 79.768745 0.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_SH -0.519225922 -16.222430 15.183978 1.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_SH -0.126796520 -15.830001 15.576408 1.0000000
## LA1511_S_RO-LA1511_C+ASC_SH 33.230075758 17.526871 48.933280 0.0000000
## LA1511_S_SH-LA1511_C+ASC_SH 57.505392150 41.802188 73.208597 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_SH 32.511809841 17.379823 47.643796 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ASC_SH 57.948556105 42.816570 73.080542 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_SH 36.437919999 21.305934 51.569906 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ASC_SH 57.510498811 42.378512 72.642485 0.0000000
## M248_C_RO-LA1511_C+ASC_SH -0.777592081 -16.480796 14.925612 1.0000000
## M248_C_SH-LA1511_C+ASC_SH 0.362743573 -15.340461 16.065948 1.0000000
## M248_C+ASC_RO-LA1511_C+ASC_SH -1.052966016 -16.756170 14.650238 1.0000000
## M248_C+ASC_SH-LA1511_C+ASC_SH 0.132118661 -15.571086 15.835323 1.0000000
## M248_C+ROS_RO-LA1511_C+ASC_SH -0.389025281 -16.092230 15.314179 1.0000000
## M248_C+ROS_SH-LA1511_C+ASC_SH 0.362595417 -15.340609 16.065800 1.0000000
## M248_S_RO-LA1511_C+ASC_SH 34.236206443 18.533002 49.939411 0.0000000
## M248_S_SH-LA1511_C+ASC_SH 60.147771468 44.444567 75.850976 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_SH 40.233704516 25.101718 55.365691 0.0000000
## M248_S+ASC_SH-LA1511_C+ASC_SH 58.954738224 43.822752 74.086725 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_SH 32.837323825 17.705337 47.969310 0.0000000
## M248_S+ROS_SH-LA1511_C+ASC_SH 63.543368296 48.411382 78.675355 0.0000000
## LA1511_C+ROS_SH-LA1511_C+ROS_RO 0.392429402 -15.310775 16.095634 1.0000000
## LA1511_S_RO-LA1511_C+ROS_RO 33.749301681 18.046097 49.452506 0.0000000
## LA1511_S_SH-LA1511_C+ROS_RO 58.024618072 42.321414 73.727822 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_RO 33.031035763 17.899049 48.163022 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ROS_RO 58.467782027 43.335796 73.599768 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_RO 36.957145921 21.825160 52.089132 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ROS_RO 58.029724733 42.897738 73.161711 0.0000000
## M248_C_RO-LA1511_C+ROS_RO -0.258366159 -15.961571 15.444838 1.0000000
## M248_C_SH-LA1511_C+ROS_RO 0.881969495 -14.821235 16.585174 1.0000000
## M248_C+ASC_RO-LA1511_C+ROS_RO -0.533740094 -16.236944 15.169464 1.0000000
## M248_C+ASC_SH-LA1511_C+ROS_RO 0.651344583 -15.051860 16.354549 1.0000000
## M248_C+ROS_RO-LA1511_C+ROS_RO 0.130200641 -15.573004 15.833405 1.0000000
## M248_C+ROS_SH-LA1511_C+ROS_RO 0.881821339 -14.821383 16.585026 1.0000000
## M248_S_RO-LA1511_C+ROS_RO 34.755432365 19.052228 50.458637 0.0000000
## M248_S_SH-LA1511_C+ROS_RO 60.666997390 44.963793 76.370202 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_RO 40.752930439 25.620944 55.884917 0.0000000
## M248_S+ASC_SH-LA1511_C+ROS_RO 59.473964146 44.341978 74.605950 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_RO 33.356549747 18.224563 48.488536 0.0000000
## M248_S+ROS_SH-LA1511_C+ROS_RO 64.062594219 48.930608 79.194581 0.0000000
## LA1511_S_RO-LA1511_C+ROS_SH 33.356872279 17.653668 49.060077 0.0000000
## LA1511_S_SH-LA1511_C+ROS_SH 57.632188670 41.928984 73.335393 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_SH 32.638606361 17.506620 47.770593 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ROS_SH 58.075352626 42.943366 73.207339 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_SH 36.564716520 21.432730 51.696703 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ROS_SH 57.637295331 42.505309 72.769282 0.0000000
## M248_C_RO-LA1511_C+ROS_SH -0.650795561 -16.354000 15.052409 1.0000000
## M248_C_SH-LA1511_C+ROS_SH 0.489540094 -15.213664 16.192744 1.0000000
## M248_C+ASC_RO-LA1511_C+ROS_SH -0.926169495 -16.629374 14.777035 1.0000000
## M248_C+ASC_SH-LA1511_C+ROS_SH 0.258915182 -15.444289 15.962120 1.0000000
## M248_C+ROS_RO-LA1511_C+ROS_SH -0.262228761 -15.965433 15.440976 1.0000000
## M248_C+ROS_SH-LA1511_C+ROS_SH 0.489391938 -15.213812 16.192596 1.0000000
## M248_S_RO-LA1511_C+ROS_SH 34.363002964 18.659799 50.066207 0.0000000
## M248_S_SH-LA1511_C+ROS_SH 60.274567989 44.571364 75.977772 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_SH 40.360501037 25.228515 55.492487 0.0000000
## M248_S+ASC_SH-LA1511_C+ROS_SH 59.081534744 43.949548 74.213521 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_SH 32.964120346 17.832134 48.096107 0.0000000
## M248_S+ROS_SH-LA1511_C+ROS_SH 63.670164817 48.538178 78.802151 0.0000000
## LA1511_S_SH-LA1511_S_RO 24.275316392 8.572112 39.978521 0.0000164
## LA1511_S+ASC_RO-LA1511_S_RO -0.718265918 -15.850252 14.413720 1.0000000
## LA1511_S+ASC_SH-LA1511_S_RO 24.718480347 9.586494 39.850467 0.0000035
## LA1511_S+ROS_RO-LA1511_S_RO 3.207844241 -11.924142 18.339831 1.0000000
## LA1511_S+ROS_SH-LA1511_S_RO 24.280423052 9.148437 39.412409 0.0000059
## M248_C_RO-LA1511_S_RO -34.007667840 -49.710872 -18.304463 0.0000000
## M248_C_SH-LA1511_S_RO -32.867332185 -48.570537 -17.164128 0.0000000
## M248_C+ASC_RO-LA1511_S_RO -34.283041774 -49.986246 -18.579837 0.0000000
## M248_C+ASC_SH-LA1511_S_RO -33.097957097 -48.801161 -17.394753 0.0000000
## M248_C+ROS_RO-LA1511_S_RO -33.619101040 -49.322305 -17.915897 0.0000000
## M248_C+ROS_SH-LA1511_S_RO -32.867480341 -48.570685 -17.164276 0.0000000
## M248_S_RO-LA1511_S_RO 1.006130685 -14.697074 16.709335 1.0000000
## M248_S_SH-LA1511_S_RO 26.917695710 11.214491 42.620900 0.0000008
## M248_S+ASC_RO-LA1511_S_RO 7.003628758 -8.128358 22.135615 0.9884439
## M248_S+ASC_SH-LA1511_S_RO 25.724662465 10.592676 40.856649 0.0000011
## M248_S+ROS_RO-LA1511_S_RO -0.392751933 -15.524738 14.739234 1.0000000
## M248_S+ROS_SH-LA1511_S_RO 30.313292538 15.181306 45.445279 0.0000000
## LA1511_S+ASC_RO-LA1511_S_SH -24.993582309 -40.125569 -9.861596 0.0000026
## LA1511_S+ASC_SH-LA1511_S_SH 0.443163955 -14.688822 15.575150 1.0000000
## LA1511_S+ROS_RO-LA1511_S_SH -21.067472151 -36.199458 -5.935486 0.0002125
## LA1511_S+ROS_SH-LA1511_S_SH 0.005106661 -15.126880 15.137093 1.0000000
## M248_C_RO-LA1511_S_SH -58.282984231 -73.986189 -42.579780 0.0000000
## M248_C_SH-LA1511_S_SH -57.142648577 -72.845853 -41.439444 0.0000000
## M248_C+ASC_RO-LA1511_S_SH -58.558358166 -74.261563 -42.855154 0.0000000
## M248_C+ASC_SH-LA1511_S_SH -57.373273489 -73.076478 -41.670069 0.0000000
## M248_C+ROS_RO-LA1511_S_SH -57.894417431 -73.597622 -42.191213 0.0000000
## M248_C+ROS_SH-LA1511_S_SH -57.142796733 -72.846001 -41.439592 0.0000000
## M248_S_RO-LA1511_S_SH -23.269185707 -38.972390 -7.565981 0.0000488
## M248_S_SH-LA1511_S_SH 2.642379318 -13.060825 18.345584 1.0000000
## M248_S+ASC_RO-LA1511_S_SH -17.271687634 -32.403674 -2.139701 0.0086937
## M248_S+ASC_SH-LA1511_S_SH 1.449346074 -13.682640 16.581332 1.0000000
## M248_S+ROS_RO-LA1511_S_SH -24.668068325 -39.800055 -9.536082 0.0000037
## M248_S+ROS_SH-LA1511_S_SH 6.037976146 -9.094010 21.169962 0.9983895
## LA1511_S+ASC_SH-LA1511_S+ASC_RO 25.436746264 10.898404 39.975088 0.0000004
## LA1511_S+ROS_RO-LA1511_S+ASC_RO 3.926110159 -10.612232 18.464452 0.9999976
## LA1511_S+ROS_SH-LA1511_S+ASC_RO 24.998688970 10.460347 39.537031 0.0000007
## M248_C_RO-LA1511_S+ASC_RO -33.289401922 -48.421388 -18.157416 0.0000000
## M248_C_SH-LA1511_S+ASC_RO -32.149066268 -47.281053 -17.017080 0.0000000
## M248_C+ASC_RO-LA1511_S+ASC_RO -33.564775857 -48.696762 -18.432790 0.0000000
## M248_C+ASC_SH-LA1511_S+ASC_RO -32.379691180 -47.511678 -17.247705 0.0000000
## M248_C+ROS_RO-LA1511_S+ASC_RO -32.900835122 -48.032821 -17.768849 0.0000000
## M248_C+ROS_SH-LA1511_S+ASC_RO -32.149214424 -47.281201 -17.017228 0.0000000
## M248_S_RO-LA1511_S+ASC_RO 1.724396603 -13.407590 16.856383 1.0000000
## M248_S_SH-LA1511_S+ASC_RO 27.635961628 12.503975 42.767948 0.0000001
## M248_S+ASC_RO-LA1511_S+ASC_RO 7.721894676 -6.816448 22.260237 0.9473406
## M248_S+ASC_SH-LA1511_S+ASC_RO 26.442928383 11.904586 40.981271 0.0000001
## M248_S+ROS_RO-LA1511_S+ASC_RO 0.325513984 -14.212828 14.863856 1.0000000
## M248_S+ROS_SH-LA1511_S+ASC_RO 31.031558456 16.493216 45.569901 0.0000000
## LA1511_S+ROS_RO-LA1511_S+ASC_SH -21.510636106 -36.048978 -6.972294 0.0000507
## LA1511_S+ROS_SH-LA1511_S+ASC_SH -0.438057294 -14.976400 14.100285 1.0000000
## M248_C_RO-LA1511_S+ASC_SH -58.726148187 -73.858135 -43.594162 0.0000000
## M248_C_SH-LA1511_S+ASC_SH -57.585812532 -72.717799 -42.453826 0.0000000
## M248_C+ASC_RO-LA1511_S+ASC_SH -59.001522121 -74.133508 -43.869536 0.0000000
## M248_C+ASC_SH-LA1511_S+ASC_SH -57.816437444 -72.948424 -42.684451 0.0000000
## M248_C+ROS_RO-LA1511_S+ASC_SH -58.337581386 -73.469568 -43.205595 0.0000000
## M248_C+ROS_SH-LA1511_S+ASC_SH -57.585960688 -72.717947 -42.453974 0.0000000
## M248_S_RO-LA1511_S+ASC_SH -23.712349662 -38.844336 -8.580363 0.0000114
## M248_S_SH-LA1511_S+ASC_SH 2.199215363 -12.932771 17.331202 1.0000000
## M248_S+ASC_RO-LA1511_S+ASC_SH -17.714851589 -32.253194 -3.176509 0.0029891
## M248_S+ASC_SH-LA1511_S+ASC_SH 1.006182119 -13.532160 15.544524 1.0000000
## M248_S+ROS_RO-LA1511_S+ASC_SH -25.111232280 -39.649575 -10.572890 0.0000006
## M248_S+ROS_SH-LA1511_S+ASC_SH 5.594812191 -8.943530 20.133154 0.9990508
## LA1511_S+ROS_SH-LA1511_S+ROS_RO 21.072578811 6.534237 35.610921 0.0000837
## M248_C_RO-LA1511_S+ROS_RO -37.215512081 -52.347498 -22.083526 0.0000000
## M248_C_SH-LA1511_S+ROS_RO -36.075176426 -51.207163 -20.943190 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_RO -37.490886015 -52.622872 -22.358900 0.0000000
## M248_C+ASC_SH-LA1511_S+ROS_RO -36.305801338 -51.437788 -21.173815 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_RO -36.826945281 -51.958932 -21.694959 0.0000000
## M248_C+ROS_SH-LA1511_S+ROS_RO -36.075324582 -51.207311 -20.943338 0.0000000
## M248_S_RO-LA1511_S+ROS_RO -2.201713556 -17.333700 12.930273 1.0000000
## M248_S_SH-LA1511_S+ROS_RO 23.709851469 8.577865 38.841838 0.0000114
## M248_S+ASC_RO-LA1511_S+ROS_RO 3.795784517 -10.742558 18.334127 0.9999987
## M248_S+ASC_SH-LA1511_S+ROS_RO 22.516818224 7.978476 37.055160 0.0000156
## M248_S+ROS_RO-LA1511_S+ROS_RO -3.600596174 -18.138938 10.937746 0.9999995
## M248_S+ROS_SH-LA1511_S+ROS_RO 27.105448297 12.567106 41.643791 0.0000000
## M248_C_RO-LA1511_S+ROS_SH -58.288090892 -73.420077 -43.156105 0.0000000
## M248_C_SH-LA1511_S+ROS_SH -57.147755238 -72.279742 -42.015769 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_SH -58.563464827 -73.695451 -43.431478 0.0000000
## M248_C+ASC_SH-LA1511_S+ROS_SH -57.378380150 -72.510366 -42.246394 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_SH -57.899524092 -73.031510 -42.767538 0.0000000
## M248_C+ROS_SH-LA1511_S+ROS_SH -57.147903394 -72.279890 -42.015917 0.0000000
## M248_S_RO-LA1511_S+ROS_SH -23.274292367 -38.406279 -8.142306 0.0000188
## M248_S_SH-LA1511_S+ROS_SH 2.637272658 -12.494714 17.769259 1.0000000
## M248_S+ASC_RO-LA1511_S+ROS_SH -17.276794294 -31.815137 -2.738452 0.0045760
## M248_S+ASC_SH-LA1511_S+ROS_SH 1.444239413 -13.094103 15.982582 1.0000000
## M248_S+ROS_RO-LA1511_S+ROS_SH -24.673174986 -39.211517 -10.134833 0.0000011
## M248_S+ROS_SH-LA1511_S+ROS_SH 6.032869486 -8.505473 20.571212 0.9972036
## M248_C_SH-M248_C_RO 1.140335655 -14.562869 16.843540 1.0000000
## M248_C+ASC_RO-M248_C_RO -0.275373934 -15.978578 15.427830 1.0000000
## M248_C+ASC_SH-M248_C_RO 0.909710742 -14.793494 16.612915 1.0000000
## M248_C+ROS_RO-M248_C_RO 0.388566800 -15.314638 16.091771 1.0000000
## M248_C+ROS_SH-M248_C_RO 1.140187499 -14.563017 16.843392 1.0000000
## M248_S_RO-M248_C_RO 35.013798525 19.310594 50.717003 0.0000000
## M248_S_SH-M248_C_RO 60.925363550 45.222159 76.628568 0.0000000
## M248_S+ASC_RO-M248_C_RO 41.011296598 25.879310 56.143283 0.0000000
## M248_S+ASC_SH-M248_C_RO 59.732330305 44.600344 74.864317 0.0000000
## M248_S+ROS_RO-M248_C_RO 33.614915907 18.482930 48.746902 0.0000000
## M248_S+ROS_SH-M248_C_RO 64.320960378 49.188974 79.452947 0.0000000
## M248_C+ASC_RO-M248_C_SH -1.415709589 -17.118914 14.287495 1.0000000
## M248_C+ASC_SH-M248_C_SH -0.230624912 -15.933829 15.472579 1.0000000
## M248_C+ROS_RO-M248_C_SH -0.751768854 -16.454973 14.951436 1.0000000
## M248_C+ROS_SH-M248_C_SH -0.000148156 -15.703353 15.703056 1.0000000
## M248_S_RO-M248_C_SH 33.873462870 18.170259 49.576667 0.0000000
## M248_S_SH-M248_C_SH 59.785027895 44.081824 75.488232 0.0000000
## M248_S+ASC_RO-M248_C_SH 39.870960943 24.738975 55.002947 0.0000000
## M248_S+ASC_SH-M248_C_SH 58.591994650 43.460008 73.723981 0.0000000
## M248_S+ROS_RO-M248_C_SH 32.474580252 17.342594 47.606567 0.0000000
## M248_S+ROS_SH-M248_C_SH 63.180624723 48.048638 78.312611 0.0000000
## M248_C+ASC_SH-M248_C+ASC_RO 1.185084677 -14.518120 16.888289 1.0000000
## M248_C+ROS_RO-M248_C+ASC_RO 0.663940734 -15.039264 16.367145 1.0000000
## M248_C+ROS_SH-M248_C+ASC_RO 1.415561433 -14.287643 17.118766 1.0000000
## M248_S_RO-M248_C+ASC_RO 35.289172459 19.585968 50.992377 0.0000000
## M248_S_SH-M248_C+ASC_RO 61.200737484 45.497533 76.903942 0.0000000
## M248_S+ASC_RO-M248_C+ASC_RO 41.286670532 26.154684 56.418657 0.0000000
## M248_S+ASC_SH-M248_C+ASC_RO 60.007704239 44.875718 75.139691 0.0000000
## M248_S+ROS_RO-M248_C+ASC_RO 33.890289841 18.758303 49.022276 0.0000000
## M248_S+ROS_SH-M248_C+ASC_RO 64.596334312 49.464348 79.728321 0.0000000
## M248_C+ROS_RO-M248_C+ASC_SH -0.521143942 -16.224348 15.182060 1.0000000
## M248_C+ROS_SH-M248_C+ASC_SH 0.230476756 -15.472728 15.933681 1.0000000
## M248_S_RO-M248_C+ASC_SH 34.104087782 18.400883 49.807292 0.0000000
## M248_S_SH-M248_C+ASC_SH 60.015652807 44.312448 75.718857 0.0000000
## M248_S+ASC_RO-M248_C+ASC_SH 40.101585855 24.969600 55.233572 0.0000000
## M248_S+ASC_SH-M248_C+ASC_SH 58.822619563 43.690633 73.954606 0.0000000
## M248_S+ROS_RO-M248_C+ASC_SH 32.705205164 17.573219 47.837192 0.0000000
## M248_S+ROS_SH-M248_C+ASC_SH 63.411249635 48.279263 78.543236 0.0000000
## M248_C+ROS_SH-M248_C+ROS_RO 0.751620698 -14.951584 16.454825 1.0000000
## M248_S_RO-M248_C+ROS_RO 34.625231725 18.922027 50.328436 0.0000000
## M248_S_SH-M248_C+ROS_RO 60.536796750 44.833592 76.240001 0.0000000
## M248_S+ASC_RO-M248_C+ROS_RO 40.622729798 25.490743 55.754716 0.0000000
## M248_S+ASC_SH-M248_C+ROS_RO 59.343763505 44.211777 74.475750 0.0000000
## M248_S+ROS_RO-M248_C+ROS_RO 33.226349106 18.094363 48.358335 0.0000000
## M248_S+ROS_SH-M248_C+ROS_RO 63.932393578 48.800407 79.064380 0.0000000
## M248_S_RO-M248_C+ROS_SH 33.873611026 18.170407 49.576815 0.0000000
## M248_S_SH-M248_C+ROS_SH 59.785176051 44.081972 75.488380 0.0000000
## M248_S+ASC_RO-M248_C+ROS_SH 39.871109099 24.739123 55.003095 0.0000000
## M248_S+ASC_SH-M248_C+ROS_SH 58.592142806 43.460156 73.724129 0.0000000
## M248_S+ROS_RO-M248_C+ROS_SH 32.474728408 17.342742 47.606715 0.0000000
## M248_S+ROS_SH-M248_C+ROS_SH 63.180772879 48.048787 78.312759 0.0000000
## M248_S_SH-M248_S_RO 25.911565025 10.208361 41.614769 0.0000026
## M248_S+ASC_RO-M248_S_RO 5.997498073 -9.134488 21.129484 0.9985382
## M248_S+ASC_SH-M248_S_RO 24.718531780 9.586545 39.850518 0.0000035
## M248_S+ROS_RO-M248_S_RO -1.398882618 -16.530869 13.733104 1.0000000
## M248_S+ROS_SH-M248_S_RO 29.307161853 14.175176 44.439148 0.0000000
## M248_S+ASC_RO-M248_S_SH -19.914066952 -35.046053 -4.782081 0.0007032
## M248_S+ASC_SH-M248_S_SH -1.193033245 -16.325020 13.938953 1.0000000
## M248_S+ROS_RO-M248_S_SH -27.310447643 -42.442434 -12.178461 0.0000002
## M248_S+ROS_SH-M248_S_SH 3.395596828 -11.736390 18.527583 0.9999999
## M248_S+ASC_SH-M248_S+ASC_RO 18.721033707 4.182691 33.259376 0.0010815
## M248_S+ROS_RO-M248_S+ASC_RO -7.396380691 -21.934723 7.141962 0.9660904
## M248_S+ROS_SH-M248_S+ASC_RO 23.309663780 8.771322 37.848006 0.0000060
## M248_S+ROS_RO-M248_S+ASC_SH -26.117414399 -40.655757 -11.579072 0.0000002
## M248_S+ROS_SH-M248_S+ASC_SH 4.588630073 -9.949712 19.126972 0.9999606
## M248_S+ROS_SH-M248_S+ROS_RO 30.706044471 16.167702 45.244387 0.0000000
P7 = Output$All.ID[,'p adj']
stat.test<- multcompLetters(P7)
stat.test
## LA1511_C_SH LA1511_C+ASC_RO LA1511_C+ASC_SH LA1511_C+ROS_RO LA1511_C+ROS_SH
## "a" "a" "a" "a" "a"
## LA1511_S_RO LA1511_S_SH LA1511_S+ASC_RO LA1511_S+ASC_SH LA1511_S+ROS_RO
## "b" "c" "b" "c" "b"
## LA1511_S+ROS_SH M248_C_RO M248_C_SH M248_C+ASC_RO M248_C+ASC_SH
## "c" "a" "a" "a" "a"
## M248_C+ROS_RO M248_C+ROS_SH M248_S_RO M248_S_SH M248_S+ASC_RO
## "a" "a" "b" "c" "b"
## M248_S+ASC_SH M248_S+ROS_RO M248_S+ROS_SH LA1511_C_RO
## "c" "b" "c" "a"
test <- as.data.frame(stat.test$Letters)
test$group1 <- rownames(test)
test$group2 <- rownames(test)
colnames(test)[1] <- "Tukey"
test
test$info <- strsplit(test$group1, "_")
test$info[[1]][2]
## [1] "C"
test$info[[1]][3]
## [1] "SH"
test$Accession <- "none"
test$Condition <- "none"
test$Tissue<- "none"
test
for(i in 1:nrow(test)){
test$Accession[i] <- test$info[[i]][1]
test$Condition[i] <- test$info[[i]][2]
test$Tissue[i] <- test$info[[i]][3]
}
test2 <- test[,c(5:7,1)]
test2$group1 <- test2$Condition
test2$group2 <- test2$Condition
ICP
ICP2 <- subset(ICP, ICP$Na.con.mg.mg.dry.weight < 70)
Na_content <- ggplot(data = ICP2, mapping = aes(x = Condition, y = Na.con.mg.mg.dry.weight, colour = Condition))
Na_content <- Na_content + geom_boxplot(alpha=0.2) + geom_jitter(width=0.1,alpha=0.2)
Na_content <- Na_content + facet_grid(Tissue~Accession , scales = "free_y")
Na_content <- Na_content + stat_summary(fun=mean, geom="point", shape=95, size=6, color="black", fill="black")
Na_content <- Na_content + scale_color_manual(values = c("blue", "plum", "rosybrown1", "red","hotpink","green"))
Na_content <- Na_content + ylab("Na content, mg/mg dry weight") + xlab("")+stat_pvalue_manual(test2, label = "Tukey", y.position = 50)
Na_content <- Na_content + theme(axis.text.x = element_text(angle=90, hjust=0.9, vjust=0.5))
Na_content <- Na_content + rremove("legend")
Na_content
aov(K.con..mg.mg.dry.weight ~ All.ID, data = ICP)
## Call:
## aov(formula = K.con..mg.mg.dry.weight ~ All.ID, data = ICP)
##
## Terms:
## All.ID Residuals
## Sum of Squares 65303.91 5421.91
## Deg. of Freedom 23 128
##
## Residual standard error: 6.508352
## Estimated effects may be unbalanced
Output <- TukeyHSD(aov(K.con..mg.mg.dry.weight ~ All.ID, data = ICP))
Output
## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = K.con..mg.mg.dry.weight ~ All.ID, data = ICP)
##
## $All.ID
## diff lwr upr p adj
## LA1511_C_SH-LA1511_C_RO -11.98094546 -25.9527932 1.9909023 0.2072978
## LA1511_C+ASC_RO-LA1511_C_RO 14.18859366 0.2167459 28.1604414 0.0418865
## LA1511_C+ASC_SH-LA1511_C_RO 2.54924172 -11.4226060 16.5210894 1.0000000
## LA1511_C+ROS_RO-LA1511_C_RO 9.11445445 -4.8573933 23.0863022 0.7268766
## LA1511_C+ROS_SH-LA1511_C_RO -10.17671724 -24.1485650 3.7951305 0.5158773
## LA1511_S_RO-LA1511_C_RO -25.17590690 -39.1477546 -11.2040592 0.0000002
## LA1511_S_SH-LA1511_C_RO -42.22649556 -56.1983433 -28.2546478 0.0000000
## LA1511_S+ASC_RO-LA1511_C_RO -19.03261488 -32.4962242 -5.5690055 0.0001505
## LA1511_S+ASC_SH-LA1511_C_RO -37.37697761 -50.8405870 -23.9133683 0.0000000
## LA1511_S+ROS_RO-LA1511_C_RO -25.87136775 -39.3349771 -12.4077584 0.0000000
## LA1511_S+ROS_SH-LA1511_C_RO -42.14595421 -55.6095636 -28.6823449 0.0000000
## M248_C_RO-LA1511_C_RO 14.10573367 0.1338859 28.0775814 0.0448409
## M248_C_SH-LA1511_C_RO 1.40109697 -12.5707507 15.3729447 1.0000000
## M248_C+ASC_RO-LA1511_C_RO 7.35584270 -6.6160050 21.3276904 0.9517532
## M248_C+ASC_SH-LA1511_C_RO 2.20800347 -11.7638442 16.1798512 1.0000000
## M248_C+ROS_RO-LA1511_C_RO 18.07816789 4.1063202 32.0500156 0.0009850
## M248_C+ROS_SH-LA1511_C_RO 10.52223160 -3.4496161 24.4940793 0.4470155
## M248_S_RO-LA1511_C_RO -23.16128169 -37.1331294 -9.1894340 0.0000023
## M248_S_SH-LA1511_C_RO -43.37405130 -57.3458990 -29.4022036 0.0000000
## M248_S+ASC_RO-LA1511_C_RO -19.71565609 -33.1792654 -6.2520467 0.0000654
## M248_S+ASC_SH-LA1511_C_RO -40.00785139 -53.4714607 -26.5442420 0.0000000
## M248_S+ROS_RO-LA1511_C_RO -26.42192150 -39.8855308 -12.9583122 0.0000000
## M248_S+ROS_SH-LA1511_C_RO -44.33464522 -57.7982546 -30.8710359 0.0000000
## LA1511_C+ASC_RO-LA1511_C_SH 26.16953912 12.1976914 40.1413868 0.0000000
## LA1511_C+ASC_SH-LA1511_C_SH 14.53018718 0.5583395 28.5020349 0.0314380
## LA1511_C+ROS_RO-LA1511_C_SH 21.09539991 7.1235522 35.0672476 0.0000304
## LA1511_C+ROS_SH-LA1511_C_SH 1.80422822 -12.1676195 15.7760759 1.0000000
## LA1511_S_RO-LA1511_C_SH -13.19496144 -27.1668092 0.7768863 0.0911703
## LA1511_S_SH-LA1511_C_SH -30.24555010 -44.2173978 -16.2737024 0.0000000
## LA1511_S+ASC_RO-LA1511_C_SH -7.05166942 -20.5152788 6.4119399 0.9541978
## LA1511_S+ASC_SH-LA1511_C_SH -25.39603215 -38.8596415 -11.9324228 0.0000000
## LA1511_S+ROS_RO-LA1511_C_SH -13.89042229 -27.3540316 -0.4268129 0.0346754
## LA1511_S+ROS_SH-LA1511_C_SH -30.16500875 -43.6286181 -16.7013994 0.0000000
## M248_C_RO-LA1511_C_SH 26.08667913 12.1148314 40.0585268 0.0000000
## M248_C_SH-LA1511_C_SH 13.38204243 -0.5898053 27.3538902 0.0792890
## M248_C+ASC_RO-LA1511_C_SH 19.33678816 5.3649404 33.3086359 0.0002426
## M248_C+ASC_SH-LA1511_C_SH 14.18894893 0.2171012 28.1607967 0.0418742
## M248_C+ROS_RO-LA1511_C_SH 30.05911335 16.0872656 44.0309611 0.0000000
## M248_C+ROS_SH-LA1511_C_SH 22.50317706 8.5313293 36.4750248 0.0000053
## M248_S_RO-LA1511_C_SH -11.18033623 -25.1521839 2.7915115 0.3262676
## M248_S_SH-LA1511_C_SH -31.39310585 -45.3649536 -17.4212581 0.0000000
## M248_S+ASC_RO-LA1511_C_SH -7.73471063 -21.1983200 5.7288987 0.8920310
## M248_S+ASC_SH-LA1511_C_SH -28.02690593 -41.4905153 -14.5632966 0.0000000
## M248_S+ROS_RO-LA1511_C_SH -14.44097604 -27.9045854 -0.9773667 0.0211287
## M248_S+ROS_SH-LA1511_C_SH -32.35369976 -45.8173091 -18.8900904 0.0000000
## LA1511_C+ASC_SH-LA1511_C+ASC_RO -11.63935195 -25.6111997 2.3324958 0.2538608
## LA1511_C+ROS_RO-LA1511_C+ASC_RO -5.07413921 -19.0459869 8.8977085 0.9996069
## LA1511_C+ROS_SH-LA1511_C+ASC_RO -24.36531091 -38.3371586 -10.3934632 0.0000005
## LA1511_S_RO-LA1511_C+ASC_RO -39.36450056 -53.3363483 -25.3926528 0.0000000
## LA1511_S_SH-LA1511_C+ASC_RO -56.41508922 -70.3869369 -42.4432415 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_RO -33.22120854 -46.6848179 -19.7575992 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ASC_RO -51.56557127 -65.0291806 -38.1019619 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_RO -40.05996142 -53.5235708 -26.5963521 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ASC_RO -56.33454788 -69.7981572 -42.8709385 0.0000000
## M248_C_RO-LA1511_C+ASC_RO -0.08286000 -14.0547077 13.8889877 1.0000000
## M248_C_SH-LA1511_C+ASC_RO -12.78749669 -26.7593444 1.1843510 0.1221453
## M248_C+ASC_RO-LA1511_C+ASC_RO -6.83275097 -20.8045987 7.1390968 0.9779800
## M248_C+ASC_SH-LA1511_C+ASC_RO -11.98059019 -25.9524379 1.9912575 0.2073429
## M248_C+ROS_RO-LA1511_C+ASC_RO 3.88957422 -10.0822735 17.8614219 0.9999958
## M248_C+ROS_SH-LA1511_C+ASC_RO -3.66636207 -17.6382098 10.3054856 0.9999986
## M248_S_RO-LA1511_C+ASC_RO -37.34987535 -51.3217231 -23.3780276 0.0000000
## M248_S_SH-LA1511_C+ASC_RO -57.56264497 -71.5344927 -43.5907973 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_RO -33.90424975 -47.3678591 -20.4406404 0.0000000
## M248_S+ASC_SH-LA1511_C+ASC_RO -54.19644505 -67.6600544 -40.7328357 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_RO -40.61051517 -54.0741245 -27.1469058 0.0000000
## M248_S+ROS_SH-LA1511_C+ASC_RO -58.52323889 -71.9868482 -45.0596295 0.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_SH 6.56521274 -7.4066350 20.5370605 0.9861376
## LA1511_C+ROS_SH-LA1511_C+ASC_SH -12.72595896 -26.6978067 1.2458888 0.1274797
## LA1511_S_RO-LA1511_C+ASC_SH -27.72514861 -41.6969963 -13.7533009 0.0000000
## LA1511_S_SH-LA1511_C+ASC_SH -44.77573727 -58.7475850 -30.8038896 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_SH -21.58185659 -35.0454659 -8.1182472 0.0000061
## LA1511_S+ASC_SH-LA1511_C+ASC_SH -39.92621932 -53.3898287 -26.4626100 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_SH -28.42060947 -41.8842188 -14.9570001 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ASC_SH -44.69519593 -58.1588053 -31.2315866 0.0000000
## M248_C_RO-LA1511_C+ASC_SH 11.55649195 -2.4153558 25.5283397 0.2661134
## M248_C_SH-LA1511_C+ASC_SH -1.14814474 -15.1199925 12.8237030 1.0000000
## M248_C+ASC_RO-LA1511_C+ASC_SH 4.80660098 -9.1652467 18.7784487 0.9998339
## M248_C+ASC_SH-LA1511_C+ASC_SH -0.34123824 -14.3130860 13.6306095 1.0000000
## M248_C+ROS_RO-LA1511_C+ASC_SH 15.52892617 1.5570785 29.5007739 0.0129001
## M248_C+ROS_SH-LA1511_C+ASC_SH 7.97298988 -5.9988578 21.9448376 0.8980265
## M248_S_RO-LA1511_C+ASC_SH -25.71052340 -39.6823711 -11.7386757 0.0000001
## M248_S_SH-LA1511_C+ASC_SH -45.92329302 -59.8951407 -31.9514453 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_SH -22.26489780 -35.7285071 -8.8012885 0.0000025
## M248_S+ASC_SH-LA1511_C+ASC_SH -42.55709310 -56.0207024 -29.0934838 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_SH -28.97116322 -42.4347726 -15.5075539 0.0000000
## M248_S+ROS_SH-LA1511_C+ASC_SH -46.88388694 -60.3474963 -33.4202776 0.0000000
## LA1511_C+ROS_SH-LA1511_C+ROS_RO -19.29117170 -33.2630194 -5.3193240 0.0002556
## LA1511_S_RO-LA1511_C+ROS_RO -34.29036135 -48.2622091 -20.3185136 0.0000000
## LA1511_S_SH-LA1511_C+ROS_RO -51.34095001 -65.3127977 -37.3691023 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_RO -28.14706933 -41.6106787 -14.6834600 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ROS_RO -46.49143206 -59.9550414 -33.0278227 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_RO -34.98582221 -48.4494316 -21.5222129 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ROS_RO -51.26040867 -64.7240180 -37.7967993 0.0000000
## M248_C_RO-LA1511_C+ROS_RO 4.99127921 -8.9805685 18.9631269 0.9996964
## M248_C_SH-LA1511_C+ROS_RO -7.71335748 -21.6852052 6.2584902 0.9239700
## M248_C+ASC_RO-LA1511_C+ROS_RO -1.75861176 -15.7304595 12.2132360 1.0000000
## M248_C+ASC_SH-LA1511_C+ROS_RO -6.90645098 -20.8782987 7.0653967 0.9751772
## M248_C+ROS_RO-LA1511_C+ROS_RO 8.96371344 -5.0081343 22.9355612 0.7541426
## M248_C+ROS_SH-LA1511_C+ROS_RO 1.40777714 -12.5640706 15.3796249 1.0000000
## M248_S_RO-LA1511_C+ROS_RO -32.27573614 -46.2475839 -18.3038884 0.0000000
## M248_S_SH-LA1511_C+ROS_RO -52.48850576 -66.4603535 -38.5166580 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_RO -28.83011054 -42.2937199 -15.3665012 0.0000000
## M248_S+ASC_SH-LA1511_C+ROS_RO -49.12230584 -62.5859152 -35.6586965 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_RO -35.53637596 -48.9999853 -22.0727666 0.0000000
## M248_S+ROS_SH-LA1511_C+ROS_RO -53.44909968 -66.9127090 -39.9854903 0.0000000
## LA1511_S_RO-LA1511_C+ROS_SH -14.99918965 -28.9710374 -1.0273419 0.0208843
## LA1511_S_SH-LA1511_C+ROS_SH -32.04977832 -46.0216260 -18.0779306 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_SH -8.85589763 -22.3195070 4.6077117 0.7127740
## LA1511_S+ASC_SH-LA1511_C+ROS_SH -27.20026036 -40.6638697 -13.7366510 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_SH -15.69465051 -29.1582599 -2.2310412 0.0062578
## LA1511_S+ROS_SH-LA1511_C+ROS_SH -31.96923697 -45.4328463 -18.5056276 0.0000000
## M248_C_RO-LA1511_C+ROS_SH 24.28245091 10.3106032 38.2542986 0.0000005
## M248_C_SH-LA1511_C+ROS_SH 11.57781422 -2.3940335 25.5496619 0.2629251
## M248_C+ASC_RO-LA1511_C+ROS_SH 17.53255994 3.5607122 31.5044077 0.0017636
## M248_C+ASC_SH-LA1511_C+ROS_SH 12.38472072 -1.5871270 26.3565684 0.1604455
## M248_C+ROS_RO-LA1511_C+ROS_SH 28.25488513 14.2830374 42.2267328 0.0000000
## M248_C+ROS_SH-LA1511_C+ROS_SH 20.69894884 6.7271011 34.6707966 0.0000491
## M248_S_RO-LA1511_C+ROS_SH -12.98456444 -26.9564122 0.9872833 0.1062484
## M248_S_SH-LA1511_C+ROS_SH -33.19733406 -47.1691818 -19.2254863 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_SH -9.53893884 -23.0025482 3.9246705 0.5723539
## M248_S+ASC_SH-LA1511_C+ROS_SH -29.83113414 -43.2947435 -16.3675248 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_SH -16.24520426 -29.7088136 -2.7815949 0.0035406
## M248_S+ROS_SH-LA1511_C+ROS_SH -34.15792798 -47.6215373 -20.6943186 0.0000000
## LA1511_S_SH-LA1511_S_RO -17.05058866 -31.0224364 -3.0787409 0.0029105
## LA1511_S+ASC_RO-LA1511_S_RO 6.14329202 -7.3203173 19.6069014 0.9902969
## LA1511_S+ASC_SH-LA1511_S_RO -12.20107071 -25.6646801 1.2625386 0.1332490
## LA1511_S+ROS_RO-LA1511_S_RO -0.69546086 -14.1590702 12.7681485 1.0000000
## LA1511_S+ROS_SH-LA1511_S_RO -16.97004732 -30.4336567 -3.5064380 0.0016241
## M248_C_RO-LA1511_S_RO 39.28164056 25.3097928 53.2534883 0.0000000
## M248_C_SH-LA1511_S_RO 26.57700387 12.6051562 40.5488516 0.0000000
## M248_C+ASC_RO-LA1511_S_RO 32.53174959 18.5599019 46.5035973 0.0000000
## M248_C+ASC_SH-LA1511_S_RO 27.38391037 13.4120627 41.3557581 0.0000000
## M248_C+ROS_RO-LA1511_S_RO 43.25407478 29.2822271 57.2259225 0.0000000
## M248_C+ROS_SH-LA1511_S_RO 35.69813849 21.7262908 49.6699862 0.0000000
## M248_S_RO-LA1511_S_RO 2.01462521 -11.9572225 15.9864729 1.0000000
## M248_S_SH-LA1511_S_RO -18.19814441 -32.1699921 -4.2262967 0.0008647
## M248_S+ASC_RO-LA1511_S_RO 5.46025081 -8.0033585 18.9238602 0.9979701
## M248_S+ASC_SH-LA1511_S_RO -14.83194449 -28.2955538 -1.3683351 0.0146413
## M248_S+ROS_RO-LA1511_S_RO -1.24601461 -14.7096240 12.2175947 1.0000000
## M248_S+ROS_SH-LA1511_S_RO -19.15873833 -32.6223477 -5.6951290 0.0001292
## LA1511_S+ASC_RO-LA1511_S_SH 23.19388068 9.7302713 36.6574900 0.0000007
## LA1511_S+ASC_SH-LA1511_S_SH 4.84951795 -8.6140914 18.3131273 0.9996543
## LA1511_S+ROS_RO-LA1511_S_SH 16.35512781 2.8915185 29.8187372 0.0031525
## LA1511_S+ROS_SH-LA1511_S_SH 0.08054135 -13.3830680 13.5441507 1.0000000
## M248_C_RO-LA1511_S_SH 56.33222923 42.3603815 70.3040769 0.0000000
## M248_C_SH-LA1511_S_SH 43.62759253 29.6557448 57.5994403 0.0000000
## M248_C+ASC_RO-LA1511_S_SH 49.58233826 35.6104905 63.5541860 0.0000000
## M248_C+ASC_SH-LA1511_S_SH 44.43449903 30.4626513 58.4063468 0.0000000
## M248_C+ROS_RO-LA1511_S_SH 60.30466345 46.3328157 74.2765112 0.0000000
## M248_C+ROS_SH-LA1511_S_SH 52.74872715 38.7768794 66.7205749 0.0000000
## M248_S_RO-LA1511_S_SH 19.06521387 5.0933662 33.0370616 0.0003304
## M248_S_SH-LA1511_S_SH -1.14755575 -15.1194035 12.8242920 1.0000000
## M248_S+ASC_RO-LA1511_S_SH 22.51083947 9.0472301 35.9744488 0.0000018
## M248_S+ASC_SH-LA1511_S_SH 2.21864417 -11.2449652 15.6822535 1.0000000
## M248_S+ROS_RO-LA1511_S_SH 15.80457406 2.3409647 29.2681834 0.0055942
## M248_S+ROS_SH-LA1511_S_SH -2.10814966 -15.5717590 11.3554597 1.0000000
## LA1511_S+ASC_SH-LA1511_S+ASC_RO -18.34436273 -31.2797802 -5.4089453 0.0001399
## LA1511_S+ROS_RO-LA1511_S+ASC_RO -6.83875288 -19.7741703 6.0966646 0.9496986
## LA1511_S+ROS_SH-LA1511_S+ASC_RO -23.11333934 -36.0487568 -10.1779219 0.0000002
## M248_C_RO-LA1511_S+ASC_RO 33.13834854 19.6747392 46.6019579 0.0000000
## M248_C_SH-LA1511_S+ASC_RO 20.43371185 6.9701025 33.8973212 0.0000266
## M248_C+ASC_RO-LA1511_S+ASC_RO 26.38845757 12.9248482 39.8520669 0.0000000
## M248_C+ASC_SH-LA1511_S+ASC_RO 21.24061835 7.7770090 34.7042277 0.0000095
## M248_C+ROS_RO-LA1511_S+ASC_RO 37.11078277 23.6471734 50.5743921 0.0000000
## M248_C+ROS_SH-LA1511_S+ASC_RO 29.55484647 16.0912371 43.0184558 0.0000000
## M248_S_RO-LA1511_S+ASC_RO -4.12866681 -17.5922762 9.3349425 0.9999761
## M248_S_SH-LA1511_S+ASC_RO -24.34143643 -37.8050458 -10.8778271 0.0000001
## M248_S+ASC_RO-LA1511_S+ASC_RO -0.68304121 -13.6184587 12.2523762 1.0000000
## M248_S+ASC_SH-LA1511_S+ASC_RO -20.97523651 -33.9106540 -8.0398191 0.0000044
## M248_S+ROS_RO-LA1511_S+ASC_RO -7.38930663 -20.3247241 5.5461108 0.8971059
## M248_S+ROS_SH-LA1511_S+ASC_RO -25.30203035 -38.2374478 -12.3666129 0.0000000
## LA1511_S+ROS_RO-LA1511_S+ASC_SH 11.50560985 -1.4298076 24.4410273 0.1559911
## LA1511_S+ROS_SH-LA1511_S+ASC_SH -4.76897661 -17.7043941 8.1664408 0.9995037
## M248_C_RO-LA1511_S+ASC_SH 51.48271127 38.0191019 64.9463206 0.0000000
## M248_C_SH-LA1511_S+ASC_SH 38.77807458 25.3144652 52.2416839 0.0000000
## M248_C+ASC_RO-LA1511_S+ASC_SH 44.73282030 31.2692110 58.1964296 0.0000000
## M248_C+ASC_SH-LA1511_S+ASC_SH 39.58498108 26.1213717 53.0485904 0.0000000
## M248_C+ROS_RO-LA1511_S+ASC_SH 55.45514549 41.9915361 68.9187548 0.0000000
## M248_C+ROS_SH-LA1511_S+ASC_SH 47.89920920 34.4355999 61.3628185 0.0000000
## M248_S_RO-LA1511_S+ASC_SH 14.21569592 0.7520866 27.6793053 0.0259561
## M248_S_SH-LA1511_S+ASC_SH -5.99707370 -19.4606830 7.4665356 0.9928315
## M248_S+ASC_RO-LA1511_S+ASC_SH 17.66132152 4.7259041 30.5967390 0.0003262
## M248_S+ASC_SH-LA1511_S+ASC_SH -2.63087378 -15.5662912 10.3045437 1.0000000
## M248_S+ROS_RO-LA1511_S+ASC_SH 10.95505610 -1.9803613 23.8904735 0.2267054
## M248_S+ROS_SH-LA1511_S+ASC_SH -6.95766762 -19.8930851 5.9777498 0.9404656
## LA1511_S+ROS_SH-LA1511_S+ROS_RO -16.27458646 -29.2100039 -3.3391690 0.0016801
## M248_C_RO-LA1511_S+ROS_RO 39.97710142 26.5134921 53.4407108 0.0000000
## M248_C_SH-LA1511_S+ROS_RO 27.27246473 13.8088554 40.7360741 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_RO 33.22721045 19.7636011 46.6908198 0.0000000
## M248_C+ASC_SH-LA1511_S+ROS_RO 28.07937123 14.6157619 41.5429806 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_RO 43.94953564 30.4859263 57.4131450 0.0000000
## M248_C+ROS_SH-LA1511_S+ROS_RO 36.39359935 22.9299900 49.8572087 0.0000000
## M248_S_RO-LA1511_S+ROS_RO 2.71008606 -10.7535233 16.1736954 1.0000000
## M248_S_SH-LA1511_S+ROS_RO -17.50268355 -30.9662929 -4.0390742 0.0008980
## M248_S+ASC_RO-LA1511_S+ROS_RO 6.15571167 -6.7797058 19.0911291 0.9839001
## M248_S+ASC_SH-LA1511_S+ROS_RO -14.13648364 -27.0719011 -1.2010662 0.0163794
## M248_S+ROS_RO-LA1511_S+ROS_RO -0.55055375 -13.4859712 12.3848637 1.0000000
## M248_S+ROS_SH-LA1511_S+ROS_RO -18.46327747 -31.3986949 -5.5278600 0.0001204
## M248_C_RO-LA1511_S+ROS_SH 56.25168788 42.7880785 69.7152972 0.0000000
## M248_C_SH-LA1511_S+ROS_SH 43.54705119 30.0834418 57.0106605 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_SH 49.50179691 36.0381876 62.9654063 0.0000000
## M248_C+ASC_SH-LA1511_S+ROS_SH 44.35395769 30.8903483 57.8175670 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_SH 60.22412210 46.7605128 73.6877314 0.0000000
## M248_C+ROS_SH-LA1511_S+ROS_SH 52.66818581 39.2045765 66.1317952 0.0000000
## M248_S_RO-LA1511_S+ROS_SH 18.98467252 5.5210632 32.4482819 0.0001595
## M248_S_SH-LA1511_S+ROS_SH -1.22809709 -14.6917064 12.2355123 1.0000000
## M248_S+ASC_RO-LA1511_S+ROS_SH 22.43029813 9.4948807 35.3657156 0.0000006
## M248_S+ASC_SH-LA1511_S+ROS_SH 2.13810282 -10.7973146 15.0735203 1.0000000
## M248_S+ROS_RO-LA1511_S+ROS_SH 15.72403271 2.7886153 28.6594502 0.0031161
## M248_S+ROS_SH-LA1511_S+ROS_SH -2.18869101 -15.1241085 10.7467264 1.0000000
## M248_C_SH-M248_C_RO -12.70463669 -26.6764844 1.2672110 0.1293704
## M248_C+ASC_RO-M248_C_RO -6.74989097 -20.7217387 7.2219567 0.9808295
## M248_C+ASC_SH-M248_C_RO -11.89773019 -25.8695779 2.0741175 0.2180522
## M248_C+ROS_RO-M248_C_RO 3.97243422 -9.9994135 17.9442819 0.9999938
## M248_C+ROS_SH-M248_C_RO -3.58350207 -17.5553498 10.3883456 0.9999991
## M248_S_RO-M248_C_RO -37.26701536 -51.2388631 -23.2951676 0.0000000
## M248_S_SH-M248_C_RO -57.47978497 -71.4516327 -43.5079373 0.0000000
## M248_S+ASC_RO-M248_C_RO -33.82138975 -47.2849991 -20.3577804 0.0000000
## M248_S+ASC_SH-M248_C_RO -54.11358505 -67.5771944 -40.6499757 0.0000000
## M248_S+ROS_RO-M248_C_RO -40.52765517 -53.9912645 -27.0640458 0.0000000
## M248_S+ROS_SH-M248_C_RO -58.44037889 -71.9039882 -44.9767695 0.0000000
## M248_C+ASC_RO-M248_C_SH 5.95474572 -8.0171020 19.9265934 0.9959772
## M248_C+ASC_SH-M248_C_SH 0.80690650 -13.1649412 14.7787542 1.0000000
## M248_C+ROS_RO-M248_C_SH 16.67707092 2.7052232 30.6489186 0.0042515
## M248_C+ROS_SH-M248_C_SH 9.12113462 -4.8507131 23.0929823 0.7256431
## M248_S_RO-M248_C_SH -24.56237866 -38.5342264 -10.5905309 0.0000004
## M248_S_SH-M248_C_SH -44.77514828 -58.7469960 -30.8033006 0.0000000
## M248_S+ASC_RO-M248_C_SH -21.11675306 -34.5803624 -7.6531437 0.0000111
## M248_S+ASC_SH-M248_C_SH -41.40894836 -54.8725577 -27.9453390 0.0000000
## M248_S+ROS_RO-M248_C_SH -27.82301848 -41.2866278 -14.3594091 0.0000000
## M248_S+ROS_SH-M248_C_SH -45.73574220 -59.1993515 -32.2721329 0.0000000
## M248_C+ASC_SH-M248_C+ASC_RO -5.14783922 -19.1196869 8.8240085 0.9995085
## M248_C+ROS_RO-M248_C+ASC_RO 10.72232519 -3.2495225 24.6941729 0.4085472
## M248_C+ROS_SH-M248_C+ASC_RO 3.16638890 -10.8054588 17.1382366 0.9999999
## M248_S_RO-M248_C+ASC_RO -30.51712439 -44.4889721 -16.5452767 0.0000000
## M248_S_SH-M248_C+ASC_RO -50.72989400 -64.7017417 -36.7580463 0.0000000
## M248_S+ASC_RO-M248_C+ASC_RO -27.07149878 -40.5351081 -13.6078894 0.0000000
## M248_S+ASC_SH-M248_C+ASC_RO -47.36369409 -60.8273034 -33.9000847 0.0000000
## M248_S+ROS_RO-M248_C+ASC_RO -33.77776420 -47.2413735 -20.3141549 0.0000000
## M248_S+ROS_SH-M248_C+ASC_RO -51.69048792 -65.1540973 -38.2268786 0.0000000
## M248_C+ROS_RO-M248_C+ASC_SH 15.87016441 1.8983167 29.8420121 0.0093597
## M248_C+ROS_SH-M248_C+ASC_SH 8.31422812 -5.6576196 22.2860758 0.8562461
## M248_S_RO-M248_C+ASC_SH -25.36928516 -39.3411329 -11.3974374 0.0000001
## M248_S_SH-M248_C+ASC_SH -45.58205478 -59.5539025 -31.6102071 0.0000000
## M248_S+ASC_RO-M248_C+ASC_SH -21.92365956 -35.3872689 -8.4600502 0.0000039
## M248_S+ASC_SH-M248_C+ASC_SH -42.21585486 -55.6794642 -28.7522455 0.0000000
## M248_S+ROS_RO-M248_C+ASC_SH -28.62992498 -42.0935343 -15.1663156 0.0000000
## M248_S+ROS_SH-M248_C+ASC_SH -46.54264870 -60.0062580 -33.0790394 0.0000000
## M248_C+ROS_SH-M248_C+ROS_RO -7.55593629 -21.5277840 6.4159114 0.9372975
## M248_S_RO-M248_C+ROS_RO -41.23944958 -55.2112973 -27.2676019 0.0000000
## M248_S_SH-M248_C+ROS_RO -61.45221919 -75.4240669 -47.4803715 0.0000000
## M248_S+ASC_RO-M248_C+ROS_RO -37.79382398 -51.2574333 -24.3302146 0.0000000
## M248_S+ASC_SH-M248_C+ROS_RO -58.08601928 -71.5496286 -44.6224099 0.0000000
## M248_S+ROS_RO-M248_C+ROS_RO -44.50008939 -57.9636987 -31.0364800 0.0000000
## M248_S+ROS_SH-M248_C+ROS_RO -62.41281311 -75.8764225 -48.9492038 0.0000000
## M248_S_RO-M248_C+ROS_SH -33.68351328 -47.6553610 -19.7116656 0.0000000
## M248_S_SH-M248_C+ROS_SH -53.89628290 -67.8681306 -39.9244352 0.0000000
## M248_S+ASC_RO-M248_C+ROS_SH -30.23788768 -43.7014970 -16.7742783 0.0000000
## M248_S+ASC_SH-M248_C+ROS_SH -50.53008298 -63.9936923 -37.0664736 0.0000000
## M248_S+ROS_RO-M248_C+ROS_SH -36.94415310 -50.4077624 -23.4805438 0.0000000
## M248_S+ROS_SH-M248_C+ROS_SH -54.85687682 -68.3204862 -41.3932675 0.0000000
## M248_S_SH-M248_S_RO -20.21276962 -34.1846173 -6.2409219 0.0000876
## M248_S+ASC_RO-M248_S_RO 3.44562560 -10.0179837 16.9092349 0.9999991
## M248_S+ASC_SH-M248_S_RO -16.84656970 -30.3101790 -3.3829604 0.0018589
## M248_S+ROS_RO-M248_S_RO -3.26063982 -16.7242492 10.2029695 0.9999997
## M248_S+ROS_SH-M248_S_RO -21.17336353 -34.6369729 -7.7097542 0.0000103
## M248_S+ASC_RO-M248_S_SH 23.65839522 10.1947859 37.1220046 0.0000004
## M248_S+ASC_SH-M248_S_SH 3.36619992 -10.0974094 16.8298093 0.9999994
## M248_S+ROS_RO-M248_S_SH 16.95212980 3.4885205 30.4157391 0.0016564
## M248_S+ROS_SH-M248_S_SH -0.96059392 -14.4242033 12.5030154 1.0000000
## M248_S+ASC_SH-M248_S+ASC_RO -20.29219530 -33.2276127 -7.3567779 0.0000111
## M248_S+ROS_RO-M248_S+ASC_RO -6.70626542 -19.6416829 6.2291520 0.9587146
## M248_S+ROS_SH-M248_S+ASC_RO -24.61898914 -37.5544066 -11.6835717 0.0000000
## M248_S+ROS_RO-M248_S+ASC_SH 13.58592988 0.6505124 26.5213473 0.0277710
## M248_S+ROS_SH-M248_S+ASC_SH -4.32679383 -17.2622113 8.6086236 0.9998952
## M248_S+ROS_SH-M248_S+ROS_RO -17.91272372 -30.8481412 -4.9773063 0.0002395
P8 = Output$All.ID[,'p adj']
stat.test<- multcompLetters(P8)
stat.test
## LA1511_C_SH LA1511_C+ASC_RO LA1511_C+ASC_SH LA1511_C+ROS_RO LA1511_C+ROS_SH
## "abc" "de" "dfg" "def" "abg"
## LA1511_S_RO LA1511_S_SH LA1511_S+ASC_RO LA1511_S+ASC_SH LA1511_S+ROS_RO
## "chi" "j" "bch" "ij" "hi"
## LA1511_S+ROS_SH M248_C_RO M248_C_SH M248_C+ASC_RO M248_C+ASC_SH
## "j" "de" "adfg" "def" "dfg"
## M248_C+ROS_RO M248_C+ROS_SH M248_S_RO M248_S_SH M248_S+ASC_RO
## "e" "def" "bch" "j" "bch"
## M248_S+ASC_SH M248_S+ROS_RO M248_S+ROS_SH LA1511_C_RO
## "j" "hi" "j" "afg"
test <- as.data.frame(stat.test$Letters)
test$group1 <- rownames(test)
test$group2 <- rownames(test)
colnames(test)[1] <- "Tukey"
test
test$info <- strsplit(test$group1, "_")
test$info[[1]][2]
## [1] "C"
test$info[[1]][3]
## [1] "SH"
test$Accession <- "none"
test$Condition <- "none"
test$Tissue<- "none"
test
for(i in 1:nrow(test)){
test$Accession[i] <- test$info[[i]][1]
test$Condition[i] <- test$info[[i]][2]
test$Tissue[i] <- test$info[[i]][3]
}
test2 <- test[,c(5:7,1)]
test2$group1 <- test2$Condition
test2$group2 <- test2$Condition
ICP
k_content <- ggplot(data = ICP, mapping = aes(x = Condition, y = K.con..mg.mg.dry.weight, colour = Condition))
k_content <- k_content + geom_boxplot(alpha=0.2) + geom_jitter(width=0.1,alpha=0.2)
k_content <- k_content + facet_grid(Tissue~Accession , scales = "free_y")
k_content <- k_content + stat_summary(fun=mean, geom="point", shape=95, size=6, color="black", fill="black")
k_content <- k_content + scale_color_manual(values = c("blue", "plum", "rosybrown1", "red","hotpink","green"))
k_content <- k_content + ylab("K content, mg/mg dry weight") + xlab("")+stat_pvalue_manual(test2, label = "Tukey", y.position = 40)
k_content <- k_content + theme(axis.text.x = element_text(angle=90, hjust=0.9, vjust=0.5))
k_content <- k_content + rremove("legend")
k_content
aov(Na.K.ratio ~ All.ID, data = ICP)
## Call:
## aov(formula = Na.K.ratio ~ All.ID, data = ICP)
##
## Terms:
## All.ID Residuals
## Sum of Squares 549.0974 26.8327
## Deg. of Freedom 23 128
##
## Residual standard error: 0.4578539
## Estimated effects may be unbalanced
Output <- TukeyHSD(aov(Na.K.ratio ~ All.ID, data = ICP))
Output
## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Na.K.ratio ~ All.ID, data = ICP)
##
## $All.ID
## diff lwr upr
## LA1511_C_SH-LA1511_C_RO 0.0168909233 -0.966010001 0.9997918474
## LA1511_C+ASC_RO-LA1511_C_RO -0.0287788918 -1.011679816 0.9541220322
## LA1511_C+ASC_SH-LA1511_C_RO -0.0069124182 -0.989813342 0.9759885059
## LA1511_C+ROS_RO-LA1511_C_RO -0.0190414315 -1.001942356 0.9638594925
## LA1511_C+ROS_SH-LA1511_C_RO 0.0009578765 -0.981943048 0.9838588005
## LA1511_S_RO-LA1511_C_RO 1.1188296087 0.135928685 2.1017305327
## LA1511_S_SH-LA1511_C_RO 4.4578819968 3.474981073 5.4407829209
## LA1511_S+ASC_RO-LA1511_C_RO 0.9225043961 -0.024642634 1.8696514259
## LA1511_S+ASC_SH-LA1511_C_RO 3.2178406563 2.270693627 4.1649876861
## LA1511_S+ROS_RO-LA1511_C_RO 1.2711354994 0.323988470 2.2182825292
## LA1511_S+ROS_SH-LA1511_C_RO 4.3605020963 3.413355067 5.3076491261
## M248_C_RO-LA1511_C_RO -0.0242007262 -1.007101650 0.9587001979
## M248_C_SH-LA1511_C_RO -0.0001398528 -0.983040777 0.9827610712
## M248_C+ASC_RO-LA1511_C_RO -0.0266208707 -1.009521795 0.9562800534
## M248_C+ASC_SH-LA1511_C_RO -0.0043530100 -0.987253934 0.9785479140
## M248_C+ROS_RO-LA1511_C_RO -0.0197020587 -1.002602983 0.9631988654
## M248_C+ROS_SH-LA1511_C_RO -0.0060554128 -0.988956337 0.9768455112
## M248_S_RO-LA1511_C_RO 1.0731558113 0.090254887 2.0560567354
## M248_S_SH-LA1511_C_RO 4.9963582357 4.013457312 5.9792591597
## M248_S+ASC_RO-LA1511_C_RO 1.1291713593 0.182024330 2.0763183891
## M248_S+ASC_SH-LA1511_C_RO 3.8690224836 2.921875454 4.8161695133
## M248_S+ROS_RO-LA1511_C_RO 1.1389086806 0.191761651 2.0860557103
## M248_S+ROS_SH-LA1511_C_RO 5.9013165209 4.954169491 6.8484635506
## LA1511_C+ASC_RO-LA1511_C_SH -0.0456698152 -1.028570739 0.9372311089
## LA1511_C+ASC_SH-LA1511_C_SH -0.0238033415 -1.006704266 0.9590975825
## LA1511_C+ROS_RO-LA1511_C_SH -0.0359323548 -1.018833279 0.9469685692
## LA1511_C+ROS_SH-LA1511_C_SH -0.0159330468 -0.998833971 0.9669678772
## LA1511_S_RO-LA1511_C_SH 1.1019386853 0.119037761 2.0848396094
## LA1511_S_SH-LA1511_C_SH 4.4409910735 3.458090149 5.4238919975
## LA1511_S+ASC_RO-LA1511_C_SH 0.9056134728 -0.041533557 1.8527605026
## LA1511_S+ASC_SH-LA1511_C_SH 3.2009497330 2.253802703 4.1480967627
## LA1511_S+ROS_RO-LA1511_C_SH 1.2542445761 0.307097546 2.2013916059
## LA1511_S+ROS_SH-LA1511_C_SH 4.3436111730 3.396464143 5.2907582027
## M248_C_RO-LA1511_C_SH -0.0410916495 -1.023992574 0.9418092745
## M248_C_SH-LA1511_C_SH -0.0170307762 -0.999931700 0.9658701479
## M248_C+ASC_RO-LA1511_C_SH -0.0435117940 -1.026412718 0.9393891300
## M248_C+ASC_SH-LA1511_C_SH -0.0212439333 -1.004144857 0.9616569907
## M248_C+ROS_RO-LA1511_C_SH -0.0365929820 -1.019493906 0.9463079420
## M248_C+ROS_SH-LA1511_C_SH -0.0229463362 -1.005847260 0.9599545879
## M248_S_RO-LA1511_C_SH 1.0562648880 0.073363964 2.0391658120
## M248_S_SH-LA1511_C_SH 4.9794673123 3.996566388 5.9623682364
## M248_S+ASC_RO-LA1511_C_SH 1.1122804360 0.165133406 2.0594274657
## M248_S+ASC_SH-LA1511_C_SH 3.8521315602 2.904984530 4.7992785900
## M248_S+ROS_RO-LA1511_C_SH 1.1220177572 0.174870727 2.0691647870
## M248_S+ROS_SH-LA1511_C_SH 5.8844255975 4.937278568 6.8315726273
## LA1511_C+ASC_SH-LA1511_C+ASC_RO 0.0218664737 -0.961034450 1.0047673977
## LA1511_C+ROS_RO-LA1511_C+ASC_RO 0.0097374603 -0.973163464 0.9926383844
## LA1511_C+ROS_SH-LA1511_C+ASC_RO 0.0297367683 -0.953164156 1.0126376924
## LA1511_S_RO-LA1511_C+ASC_RO 1.1476085005 0.164707576 2.1305094245
## LA1511_S_SH-LA1511_C+ASC_RO 4.4866608887 3.503759965 5.4695618127
## LA1511_S+ASC_RO-LA1511_C+ASC_RO 0.9512832880 0.004136258 1.8984303177
## LA1511_S+ASC_SH-LA1511_C+ASC_RO 3.2466195481 2.299472518 4.1937665779
## LA1511_S+ROS_RO-LA1511_C+ASC_RO 1.2999143913 0.352767361 2.2470614210
## LA1511_S+ROS_SH-LA1511_C+ASC_RO 4.3892809881 3.442133958 5.3364280179
## M248_C_RO-LA1511_C+ASC_RO 0.0045781657 -0.978322758 0.9874790897
## M248_C_SH-LA1511_C+ASC_RO 0.0286390390 -0.954261885 1.0115399630
## M248_C+ASC_RO-LA1511_C+ASC_RO 0.0021580212 -0.980742903 0.9850589452
## M248_C+ASC_SH-LA1511_C+ASC_RO 0.0244258818 -0.958475042 1.0073268059
## M248_C+ROS_RO-LA1511_C+ASC_RO 0.0090768332 -0.973824091 0.9919777572
## M248_C+ROS_SH-LA1511_C+ASC_RO 0.0227234790 -0.960177445 1.0056244030
## M248_S_RO-LA1511_C+ASC_RO 1.1019347032 0.119033779 2.0848356272
## M248_S_SH-LA1511_C+ASC_RO 5.0251371275 4.042236203 6.0080380515
## M248_S+ASC_RO-LA1511_C+ASC_RO 1.1579502511 0.210803221 2.1050972809
## M248_S+ASC_SH-LA1511_C+ASC_RO 3.8978013754 2.950654346 4.8449484052
## M248_S+ROS_RO-LA1511_C+ASC_RO 1.1676875724 0.220540543 2.1148346022
## M248_S+ROS_SH-LA1511_C+ASC_RO 5.9300954127 4.982948383 6.8772424425
## LA1511_C+ROS_RO-LA1511_C+ASC_SH -0.0121290133 -0.995029937 0.9707719107
## LA1511_C+ROS_SH-LA1511_C+ASC_SH 0.0078702947 -0.975030629 0.9907712187
## LA1511_S_RO-LA1511_C+ASC_SH 1.1257420268 0.142841103 2.1086429509
## LA1511_S_SH-LA1511_C+ASC_SH 4.4647944150 3.481893491 5.4476953390
## LA1511_S+ASC_RO-LA1511_C+ASC_SH 0.9294168143 -0.017730215 1.8765638441
## LA1511_S+ASC_SH-LA1511_C+ASC_SH 3.2247530745 2.277606045 4.1719001042
## LA1511_S+ROS_RO-LA1511_C+ASC_SH 1.2780479176 0.330900888 2.2251949474
## LA1511_S+ROS_SH-LA1511_C+ASC_SH 4.3674145145 3.420267485 5.3145615442
## M248_C_RO-LA1511_C+ASC_SH -0.0172883080 -1.000189232 0.9656126160
## M248_C_SH-LA1511_C+ASC_SH 0.0067725653 -0.976128359 0.9896734894
## M248_C+ASC_RO-LA1511_C+ASC_SH -0.0197084525 -1.002609377 0.9631924715
## M248_C+ASC_SH-LA1511_C+ASC_SH 0.0025594082 -0.980341516 0.9854603322
## M248_C+ROS_RO-LA1511_C+ASC_SH -0.0127896405 -0.995690565 0.9701112835
## M248_C+ROS_SH-LA1511_C+ASC_SH 0.0008570053 -0.982043919 0.9837579294
## M248_S_RO-LA1511_C+ASC_SH 1.0800682295 0.097167305 2.0629691535
## M248_S_SH-LA1511_C+ASC_SH 5.0032706538 4.020369730 5.9861715779
## M248_S+ASC_RO-LA1511_C+ASC_SH 1.1360837775 0.188936748 2.0832308072
## M248_S+ASC_SH-LA1511_C+ASC_SH 3.8759349017 2.928787872 4.8230819315
## M248_S+ROS_RO-LA1511_C+ASC_SH 1.1458210987 0.198674069 2.0929681285
## M248_S+ROS_SH-LA1511_C+ASC_SH 5.9082289390 4.961081909 6.8553759688
## LA1511_C+ROS_SH-LA1511_C+ROS_RO 0.0199993080 -0.962901616 1.0029002320
## LA1511_S_RO-LA1511_C+ROS_RO 1.1378710402 0.154970116 2.1207719642
## LA1511_S_SH-LA1511_C+ROS_RO 4.4769234283 3.494022504 5.4598243524
## LA1511_S+ASC_RO-LA1511_C+ROS_RO 0.9415458276 -0.005601202 1.8886928574
## LA1511_S+ASC_SH-LA1511_C+ROS_RO 3.2368820878 2.289735058 4.1840291176
## LA1511_S+ROS_RO-LA1511_C+ROS_RO 1.2901769309 0.343029901 2.2373239607
## LA1511_S+ROS_SH-LA1511_C+ROS_RO 4.3795435278 3.432396498 5.3266905576
## M248_C_RO-LA1511_C+ROS_RO -0.0051592947 -0.988060219 0.9777416294
## M248_C_SH-LA1511_C+ROS_RO 0.0189015787 -0.963999345 1.0018025027
## M248_C+ASC_RO-LA1511_C+ROS_RO -0.0075794392 -0.990480363 0.9753214849
## M248_C+ASC_SH-LA1511_C+ROS_RO 0.0146884215 -0.968212503 0.9975893455
## M248_C+ROS_RO-LA1511_C+ROS_RO -0.0006606272 -0.983561551 0.9822402969
## M248_C+ROS_SH-LA1511_C+ROS_RO 0.0129860187 -0.969914905 0.9958869427
## M248_S_RO-LA1511_C+ROS_RO 1.0921972428 0.109296319 2.0750981669
## M248_S_SH-LA1511_C+ROS_RO 5.0153996672 4.032498743 5.9983005912
## M248_S+ASC_RO-LA1511_C+ROS_RO 1.1482127908 0.201065761 2.0953598206
## M248_S+ASC_SH-LA1511_C+ROS_RO 3.8880639151 2.940916885 4.8352109448
## M248_S+ROS_RO-LA1511_C+ROS_RO 1.1579501121 0.210803082 2.1050971418
## M248_S+ROS_SH-LA1511_C+ROS_RO 5.9203579524 4.973210923 6.8675049821
## LA1511_S_RO-LA1511_C+ROS_SH 1.1178717322 0.134970808 2.1007726562
## LA1511_S_SH-LA1511_C+ROS_SH 4.4569241203 3.474023196 5.4398250444
## LA1511_S+ASC_RO-LA1511_C+ROS_SH 0.9215465196 -0.025600510 1.8686935494
## LA1511_S+ASC_SH-LA1511_C+ROS_SH 3.2168827798 2.269735750 4.1640298096
## LA1511_S+ROS_RO-LA1511_C+ROS_SH 1.2701776229 0.323030593 2.2173246527
## LA1511_S+ROS_SH-LA1511_C+ROS_SH 4.3595442198 3.412397190 5.3066912496
## M248_C_RO-LA1511_C+ROS_SH -0.0251586027 -1.008059527 0.9577423214
## M248_C_SH-LA1511_C+ROS_SH -0.0010977293 -0.983998653 0.9818031947
## M248_C+ASC_RO-LA1511_C+ROS_SH -0.0275787472 -1.010479671 0.9553221769
## M248_C+ASC_SH-LA1511_C+ROS_SH -0.0053108865 -0.988211811 0.9775900375
## M248_C+ROS_RO-LA1511_C+ROS_SH -0.0206599352 -1.003560859 0.9622409889
## M248_C+ROS_SH-LA1511_C+ROS_SH -0.0070132893 -0.989914213 0.9758876347
## M248_S_RO-LA1511_C+ROS_SH 1.0721979348 0.089297011 2.0550988589
## M248_S_SH-LA1511_C+ROS_SH 4.9954003592 4.012499435 5.9783012832
## M248_S+ASC_RO-LA1511_C+ROS_SH 1.1282134828 0.181066453 2.0753605126
## M248_S+ASC_SH-LA1511_C+ROS_SH 3.8680646071 2.920917577 4.8152116368
## M248_S+ROS_RO-LA1511_C+ROS_SH 1.1379508041 0.190803774 2.0850978338
## M248_S+ROS_SH-LA1511_C+ROS_SH 5.9003586444 4.953211615 6.8475056741
## LA1511_S_SH-LA1511_S_RO 3.3390523882 2.356151464 4.3219533122
## LA1511_S+ASC_RO-LA1511_S_RO -0.1963252125 -1.143472242 0.7508218172
## LA1511_S+ASC_SH-LA1511_S_RO 2.0990110476 1.151864018 3.0461580774
## LA1511_S+ROS_RO-LA1511_S_RO 0.1523058908 -0.794841139 1.0994529205
## LA1511_S+ROS_SH-LA1511_S_RO 3.2416724876 2.294525458 4.1888195174
## M248_C_RO-LA1511_S_RO -1.1430303348 -2.125931259 -0.1601294108
## M248_C_SH-LA1511_S_RO -1.1189694615 -2.101870386 -0.1360685375
## M248_C+ASC_RO-LA1511_S_RO -1.1454504793 -2.128351403 -0.1625495553
## M248_C+ASC_SH-LA1511_S_RO -1.1231826187 -2.106083543 -0.1402816946
## M248_C+ROS_RO-LA1511_S_RO -1.1385316673 -2.121432591 -0.1556307433
## M248_C+ROS_SH-LA1511_S_RO -1.1248850215 -2.107785946 -0.1419840975
## M248_S_RO-LA1511_S_RO -0.0456737973 -1.028574721 0.9372271267
## M248_S_SH-LA1511_S_RO 3.8775286270 2.894627703 4.8604295510
## M248_S+ASC_RO-LA1511_S_RO 0.0103417506 -0.936805279 0.9574887804
## M248_S+ASC_SH-LA1511_S_RO 2.7501928749 1.803045845 3.6973399047
## M248_S+ROS_RO-LA1511_S_RO 0.0200790719 -0.927067958 0.9672261017
## M248_S+ROS_SH-LA1511_S_RO 4.7824869122 3.835339882 5.7296339420
## LA1511_S+ASC_RO-LA1511_S_SH -3.5353776007 -4.482524630 -2.5882305709
## LA1511_S+ASC_SH-LA1511_S_SH -1.2400413405 -2.187188370 -0.2928943108
## LA1511_S+ROS_RO-LA1511_S_SH -3.1867464974 -4.133893527 -2.2395994676
## LA1511_S+ROS_SH-LA1511_S_SH -0.0973799005 -1.044526930 0.8497671292
## M248_C_RO-LA1511_S_SH -4.4820827230 -5.464983647 -3.4991817990
## M248_C_SH-LA1511_S_SH -4.4580218497 -5.440922774 -3.4751209256
## M248_C+ASC_RO-LA1511_S_SH -4.4845028675 -5.467403792 -3.5016019435
## M248_C+ASC_SH-LA1511_S_SH -4.4622350068 -5.445135931 -3.4793340828
## M248_C+ROS_RO-LA1511_S_SH -4.4775840555 -5.460484980 -3.4946831315
## M248_C+ROS_SH-LA1511_S_SH -4.4639374097 -5.446838334 -3.4810364856
## M248_S_RO-LA1511_S_SH -3.3847261855 -4.367627110 -2.4018252615
## M248_S_SH-LA1511_S_SH 0.5384762388 -0.444424685 1.5213771629
## M248_S+ASC_RO-LA1511_S_SH -3.3287106375 -4.275857667 -2.3815636078
## M248_S+ASC_SH-LA1511_S_SH -0.5888595133 -1.536006543 0.3582875165
## M248_S+ROS_RO-LA1511_S_SH -3.3189733163 -4.266120346 -2.3718262865
## M248_S+ROS_SH-LA1511_S_SH 1.4434345240 0.496287494 2.3905815538
## LA1511_S+ASC_SH-LA1511_S+ASC_RO 2.2953362601 1.385346829 3.2053256917
## LA1511_S+ROS_RO-LA1511_S+ASC_RO 0.3486311033 -0.561358328 1.2586205348
## LA1511_S+ROS_SH-LA1511_S+ASC_RO 3.4379977001 2.528008269 4.3479871317
## M248_C_RO-LA1511_S+ASC_RO -0.9467051223 -1.893852152 0.0004419075
## M248_C_SH-LA1511_S+ASC_RO -0.9226442490 -1.869791279 0.0245027808
## M248_C+ASC_RO-LA1511_S+ASC_RO -0.9491252668 -1.896272297 -0.0019782370
## M248_C+ASC_SH-LA1511_S+ASC_RO -0.9268574061 -1.874004436 0.0202896236
## M248_C+ROS_RO-LA1511_S+ASC_RO -0.9422064548 -1.889353485 0.0049405750
## M248_C+ROS_SH-LA1511_S+ASC_RO -0.9285598090 -1.875706839 0.0185872208
## M248_S_RO-LA1511_S+ASC_RO 0.1506514152 -0.796495615 1.0977984450
## M248_S_SH-LA1511_S+ASC_RO 4.0738538395 3.126706810 5.0210008693
## M248_S+ASC_RO-LA1511_S+ASC_RO 0.2066669631 -0.703322468 1.1166563947
## M248_S+ASC_SH-LA1511_S+ASC_RO 2.9465180874 2.036528656 3.8565075190
## M248_S+ROS_RO-LA1511_S+ASC_RO 0.2164042844 -0.693585147 1.1263937160
## M248_S+ROS_SH-LA1511_S+ASC_RO 4.9788121247 4.068822693 5.8888015563
## LA1511_S+ROS_RO-LA1511_S+ASC_SH -1.9467051569 -2.856694588 -1.0367157253
## LA1511_S+ROS_SH-LA1511_S+ASC_SH 1.1426614400 0.232672008 2.0526508716
## M248_C_RO-LA1511_S+ASC_SH -3.2420413825 -4.189188412 -2.2948943527
## M248_C_SH-LA1511_S+ASC_SH -3.2179805091 -4.165127539 -2.2708334794
## M248_C+ASC_RO-LA1511_S+ASC_SH -3.2444615270 -4.191608557 -2.2973144972
## M248_C+ASC_SH-LA1511_S+ASC_SH -3.2221936663 -4.169340696 -2.2750466365
## M248_C+ROS_RO-LA1511_S+ASC_SH -3.2375427150 -4.184689745 -2.2903956852
## M248_C+ROS_SH-LA1511_S+ASC_SH -3.2238960691 -4.171043099 -2.2767490394
## M248_S_RO-LA1511_S+ASC_SH -2.1446848450 -3.091831875 -1.1975378152
## M248_S_SH-LA1511_S+ASC_SH 1.7785175794 0.831370550 2.7256646091
## M248_S+ASC_RO-LA1511_S+ASC_SH -2.0886692970 -2.998658729 -1.1786798654
## M248_S+ASC_SH-LA1511_S+ASC_SH 0.6511818273 -0.258807604 1.5611712588
## M248_S+ROS_RO-LA1511_S+ASC_SH -2.0789319757 -2.988921407 -1.1689425442
## M248_S+ROS_SH-LA1511_S+ASC_SH 2.6834758646 1.773486433 3.5934652961
## LA1511_S+ROS_SH-LA1511_S+ROS_RO 3.0893665969 2.179377165 3.9993560284
## M248_C_RO-LA1511_S+ROS_RO -1.2953362256 -2.242483255 -0.3481891958
## M248_C_SH-LA1511_S+ROS_RO -1.2712753523 -2.218422382 -0.3241283225
## M248_C+ASC_RO-LA1511_S+ROS_RO -1.2977563701 -2.244903400 -0.3506093403
## M248_C+ASC_SH-LA1511_S+ROS_RO -1.2754885094 -2.222635539 -0.3283414797
## M248_C+ROS_RO-LA1511_S+ROS_RO -1.2908375581 -2.237984588 -0.3436905283
## M248_C+ROS_SH-LA1511_S+ROS_RO -1.2771909123 -2.224337942 -0.3300438825
## M248_S_RO-LA1511_S+ROS_RO -0.1979796881 -1.145126718 0.7491673417
## M248_S_SH-LA1511_S+ROS_RO 3.7252227362 2.778075706 4.6723697660
## M248_S+ASC_RO-LA1511_S+ROS_RO -0.1419641401 -1.051953572 0.7680252914
## M248_S+ASC_SH-LA1511_S+ROS_RO 2.5978869841 1.687897553 3.5078764157
## M248_S+ROS_RO-LA1511_S+ROS_RO -0.1322268189 -1.042216250 0.7777626127
## M248_S+ROS_SH-LA1511_S+ROS_RO 4.6301810214 3.720191590 5.5401704530
## M248_C_RO-LA1511_S+ROS_SH -4.3847028225 -5.331849852 -3.4375557927
## M248_C_SH-LA1511_S+ROS_SH -4.3606419491 -5.307788979 -3.4134949194
## M248_C+ASC_RO-LA1511_S+ROS_SH -4.3871229670 -5.334269997 -3.4399759372
## M248_C+ASC_SH-LA1511_S+ROS_SH -4.3648551063 -5.312002136 -3.4177080765
## M248_C+ROS_RO-LA1511_S+ROS_SH -4.3802041550 -5.327351185 -3.4330571252
## M248_C+ROS_SH-LA1511_S+ROS_SH -4.3665575091 -5.313704539 -3.4194104794
## M248_S_RO-LA1511_S+ROS_SH -3.2873462850 -4.234493315 -2.3401992552
## M248_S_SH-LA1511_S+ROS_SH 0.6358561394 -0.311290890 1.5830031691
## M248_S+ASC_RO-LA1511_S+ROS_SH -3.2313307370 -4.141320169 -2.3213413054
## M248_S+ASC_SH-LA1511_S+ROS_SH -0.4914796127 -1.401469044 0.4185098188
## M248_S+ROS_RO-LA1511_S+ROS_SH -3.2215934157 -4.131582847 -2.3116039842
## M248_S+ROS_SH-LA1511_S+ROS_SH 1.5408144246 0.630824993 2.4508038561
## M248_C_SH-M248_C_RO 0.0240608733 -0.958840051 1.0069617974
## M248_C+ASC_RO-M248_C_RO -0.0024201445 -0.985321069 0.9804807795
## M248_C+ASC_SH-M248_C_RO 0.0198477162 -0.963053208 1.0027486402
## M248_C+ROS_RO-M248_C_RO 0.0044986675 -0.978402257 0.9873995915
## M248_C+ROS_SH-M248_C_RO 0.0181453133 -0.964755611 1.0010462374
## M248_S_RO-M248_C_RO 1.0973565375 0.114455613 2.0802574615
## M248_S_SH-M248_C_RO 5.0205589618 4.037658038 6.0034598859
## M248_S+ASC_RO-M248_C_RO 1.1533720855 0.206225056 2.1005191152
## M248_S+ASC_SH-M248_C_RO 3.8932232097 2.946076180 4.8403702395
## M248_S+ROS_RO-M248_C_RO 1.1631094067 0.215962377 2.1102564365
## M248_S+ROS_SH-M248_C_RO 5.9255172470 4.978370217 6.8726642768
## M248_C+ASC_RO-M248_C_SH -0.0264810178 -1.009381942 0.9564199062
## M248_C+ASC_SH-M248_C_SH -0.0042131572 -0.987114081 0.9786877669
## M248_C+ROS_RO-M248_C_SH -0.0195622058 -1.002463130 0.9633387182
## M248_C+ROS_SH-M248_C_SH -0.0059155600 -0.988816484 0.9769853640
## M248_S_RO-M248_C_SH 1.0732956642 0.090394740 2.0561965882
## M248_S_SH-M248_C_SH 4.9964980885 4.013597164 5.9793990125
## M248_S+ASC_RO-M248_C_SH 1.1293112121 0.182164182 2.0764582419
## M248_S+ASC_SH-M248_C_SH 3.8691623364 2.922015307 4.8163093662
## M248_S+ROS_RO-M248_C_SH 1.1390485334 0.191901504 2.0861955632
## M248_S+ROS_SH-M248_C_SH 5.9014563737 4.954309344 6.8486034035
## M248_C+ASC_SH-M248_C+ASC_RO 0.0222678607 -0.960633063 1.0051687847
## M248_C+ROS_RO-M248_C+ASC_RO 0.0069188120 -0.975982112 0.9898197360
## M248_C+ROS_SH-M248_C+ASC_RO 0.0205654578 -0.962335466 1.0034663819
## M248_S_RO-M248_C+ASC_RO 1.0997766820 0.116875758 2.0826776060
## M248_S_SH-M248_C+ASC_RO 5.0229791063 4.040078182 6.0058800304
## M248_S+ASC_RO-M248_C+ASC_RO 1.1557922300 0.208645200 2.1029392597
## M248_S+ASC_SH-M248_C+ASC_RO 3.8956433542 2.948496324 4.8427903840
## M248_S+ROS_RO-M248_C+ASC_RO 1.1655295512 0.218382521 2.1126765810
## M248_S+ROS_SH-M248_C+ASC_RO 5.9279373915 4.980790362 6.8750844213
## M248_C+ROS_RO-M248_C+ASC_SH -0.0153490487 -0.998249973 0.9675518754
## M248_C+ROS_SH-M248_C+ASC_SH -0.0017024028 -0.984603327 0.9811985212
## M248_S_RO-M248_C+ASC_SH 1.0775088213 0.094607897 2.0604097454
## M248_S_SH-M248_C+ASC_SH 5.0007112457 4.017810322 5.9836121697
## M248_S+ASC_RO-M248_C+ASC_SH 1.1335243693 0.186377340 2.0806713991
## M248_S+ASC_SH-M248_C+ASC_SH 3.8733754936 2.926228464 4.8205225233
## M248_S+ROS_RO-M248_C+ASC_SH 1.1432616906 0.196114661 2.0904087203
## M248_S+ROS_SH-M248_C+ASC_SH 5.9056695309 4.958522501 6.8528165606
## M248_C+ROS_SH-M248_C+ROS_RO 0.0136466458 -0.969254278 0.9965475699
## M248_S_RO-M248_C+ROS_RO 1.0928578700 0.109956946 2.0757587940
## M248_S_SH-M248_C+ROS_RO 5.0160602943 4.033159370 5.9989612184
## M248_S+ASC_RO-M248_C+ROS_RO 1.1488734180 0.201726388 2.0960204477
## M248_S+ASC_SH-M248_C+ROS_RO 3.8887245422 2.941577512 4.8358715720
## M248_S+ROS_RO-M248_C+ROS_RO 1.1586107392 0.211463709 2.1057577690
## M248_S+ROS_SH-M248_C+ROS_RO 5.9210185795 4.973871550 6.8681656093
## M248_S_RO-M248_C+ROS_SH 1.0792112242 0.096310300 2.0621121482
## M248_S_SH-M248_C+ROS_SH 5.0024136485 4.019512724 5.9853145725
## M248_S+ASC_RO-M248_C+ROS_SH 1.1352267721 0.188079742 2.0823738019
## M248_S+ASC_SH-M248_C+ROS_SH 3.8750778964 2.927930867 4.8222249262
## M248_S+ROS_RO-M248_C+ROS_SH 1.1449640934 0.197817064 2.0921111232
## M248_S+ROS_SH-M248_C+ROS_SH 5.9073719337 4.960224904 6.8545189635
## M248_S_SH-M248_S_RO 3.9232024243 2.940301500 4.9061033484
## M248_S+ASC_RO-M248_S_RO 0.0560155480 -0.891131482 1.0031625777
## M248_S+ASC_SH-M248_S_RO 2.7958666722 1.848719642 3.7430137020
## M248_S+ROS_RO-M248_S_RO 0.0657528692 -0.881394161 1.0128998990
## M248_S+ROS_SH-M248_S_RO 4.8281607095 3.881013680 5.7753077393
## M248_S+ASC_RO-M248_S_SH -3.8671868764 -4.814333906 -2.9200398466
## M248_S+ASC_SH-M248_S_SH -1.1273357521 -2.074482782 -0.1801887223
## M248_S+ROS_RO-M248_S_SH -3.8574495551 -4.804596585 -2.9103025253
## M248_S+ROS_SH-M248_S_SH 0.9049582852 -0.042188745 1.8521053150
## M248_S+ASC_SH-M248_S+ASC_RO 2.7398511243 1.829861693 3.6498405558
## M248_S+ROS_RO-M248_S+ASC_RO 0.0097373213 -0.900252110 0.9197267528
## M248_S+ROS_SH-M248_S+ASC_RO 4.7721451616 3.862155730 5.6821345931
## M248_S+ROS_RO-M248_S+ASC_SH -2.7301138030 -3.640103235 -1.8201243714
## M248_S+ROS_SH-M248_S+ASC_SH 2.0322940373 1.122304606 2.9422834688
## M248_S+ROS_SH-M248_S+ROS_RO 4.7624078403 3.852418409 5.6723972718
## p adj
## LA1511_C_SH-LA1511_C_RO 1.0000000
## LA1511_C+ASC_RO-LA1511_C_RO 1.0000000
## LA1511_C+ASC_SH-LA1511_C_RO 1.0000000
## LA1511_C+ROS_RO-LA1511_C_RO 1.0000000
## LA1511_C+ROS_SH-LA1511_C_RO 1.0000000
## LA1511_S_RO-LA1511_C_RO 0.0090622
## LA1511_S_SH-LA1511_C_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_C_RO 0.0666782
## LA1511_S+ASC_SH-LA1511_C_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_C_RO 0.0004701
## LA1511_S+ROS_SH-LA1511_C_RO 0.0000000
## M248_C_RO-LA1511_C_RO 1.0000000
## M248_C_SH-LA1511_C_RO 1.0000000
## M248_C+ASC_RO-LA1511_C_RO 1.0000000
## M248_C+ASC_SH-LA1511_C_RO 1.0000000
## M248_C+ROS_RO-LA1511_C_RO 1.0000000
## M248_C+ROS_SH-LA1511_C_RO 1.0000000
## M248_S_RO-LA1511_C_RO 0.0165943
## M248_S_SH-LA1511_C_RO 0.0000000
## M248_S+ASC_RO-LA1511_C_RO 0.0043380
## M248_S+ASC_SH-LA1511_C_RO 0.0000000
## M248_S+ROS_RO-LA1511_C_RO 0.0037541
## M248_S+ROS_SH-LA1511_C_RO 0.0000000
## LA1511_C+ASC_RO-LA1511_C_SH 1.0000000
## LA1511_C+ASC_SH-LA1511_C_SH 1.0000000
## LA1511_C+ROS_RO-LA1511_C_SH 1.0000000
## LA1511_C+ROS_SH-LA1511_C_SH 1.0000000
## LA1511_S_RO-LA1511_C_SH 0.0113729
## LA1511_S_SH-LA1511_C_SH 0.0000000
## LA1511_S+ASC_RO-LA1511_C_SH 0.0806687
## LA1511_S+ASC_SH-LA1511_C_SH 0.0000000
## LA1511_S+ROS_RO-LA1511_C_SH 0.0006198
## LA1511_S+ROS_SH-LA1511_C_SH 0.0000000
## M248_C_RO-LA1511_C_SH 1.0000000
## M248_C_SH-LA1511_C_SH 1.0000000
## M248_C+ASC_RO-LA1511_C_SH 1.0000000
## M248_C+ASC_SH-LA1511_C_SH 1.0000000
## M248_C+ROS_RO-LA1511_C_SH 1.0000000
## M248_C+ROS_SH-LA1511_C_SH 1.0000000
## M248_S_RO-LA1511_C_SH 0.0205976
## M248_S_SH-LA1511_C_SH 0.0000000
## M248_S+ASC_RO-LA1511_C_SH 0.0055578
## M248_S+ASC_SH-LA1511_C_SH 0.0000000
## M248_S+ROS_RO-LA1511_C_SH 0.0048202
## M248_S+ROS_SH-LA1511_C_SH 0.0000000
## LA1511_C+ASC_SH-LA1511_C+ASC_RO 1.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_RO 1.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_RO 1.0000000
## LA1511_S_RO-LA1511_C+ASC_RO 0.0061002
## LA1511_S_SH-LA1511_C+ASC_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_RO 0.0475880
## LA1511_S+ASC_SH-LA1511_C+ASC_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_RO 0.0002915
## LA1511_S+ROS_SH-LA1511_C+ASC_RO 0.0000000
## M248_C_RO-LA1511_C+ASC_RO 1.0000000
## M248_C_SH-LA1511_C+ASC_RO 1.0000000
## M248_C+ASC_RO-LA1511_C+ASC_RO 1.0000000
## M248_C+ASC_SH-LA1511_C+ASC_RO 1.0000000
## M248_C+ROS_RO-LA1511_C+ASC_RO 1.0000000
## M248_C+ROS_SH-LA1511_C+ASC_RO 1.0000000
## M248_S_RO-LA1511_C+ASC_RO 0.0113736
## M248_S_SH-LA1511_C+ASC_RO 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_RO 0.0028195
## M248_S+ASC_SH-LA1511_C+ASC_RO 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_RO 0.0024312
## M248_S+ROS_SH-LA1511_C+ASC_RO 0.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_SH 1.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_SH 1.0000000
## LA1511_S_RO-LA1511_C+ASC_SH 0.0082486
## LA1511_S_SH-LA1511_C+ASC_SH 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ASC_SH 0.0615782
## LA1511_S+ASC_SH-LA1511_C+ASC_SH 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ASC_SH 0.0004194
## LA1511_S+ROS_SH-LA1511_C+ASC_SH 0.0000000
## M248_C_RO-LA1511_C+ASC_SH 1.0000000
## M248_C_SH-LA1511_C+ASC_SH 1.0000000
## M248_C+ASC_RO-LA1511_C+ASC_SH 1.0000000
## M248_C+ASC_SH-LA1511_C+ASC_SH 1.0000000
## M248_C+ROS_RO-LA1511_C+ASC_SH 1.0000000
## M248_C+ROS_SH-LA1511_C+ASC_SH 1.0000000
## M248_S_RO-LA1511_C+ASC_SH 0.0151713
## M248_S_SH-LA1511_C+ASC_SH 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_SH 0.0039154
## M248_S+ASC_SH-LA1511_C+ASC_SH 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_SH 0.0033853
## M248_S+ROS_SH-LA1511_C+ASC_SH 0.0000000
## LA1511_C+ROS_SH-LA1511_C+ROS_RO 1.0000000
## LA1511_S_RO-LA1511_C+ROS_RO 0.0069828
## LA1511_S_SH-LA1511_C+ROS_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_RO 0.0534350
## LA1511_S+ASC_SH-LA1511_C+ROS_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_RO 0.0003430
## LA1511_S+ROS_SH-LA1511_C+ROS_RO 0.0000000
## M248_C_RO-LA1511_C+ROS_RO 1.0000000
## M248_C_SH-LA1511_C+ROS_RO 1.0000000
## M248_C+ASC_RO-LA1511_C+ROS_RO 1.0000000
## M248_C+ASC_SH-LA1511_C+ROS_RO 1.0000000
## M248_C+ROS_RO-LA1511_C+ROS_RO 1.0000000
## M248_C+ROS_SH-LA1511_C+ROS_RO 1.0000000
## M248_S_RO-LA1511_C+ROS_RO 0.0129414
## M248_S_SH-LA1511_C+ROS_RO 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_RO 0.0032659
## M248_S+ASC_SH-LA1511_C+ROS_RO 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_RO 0.0028195
## M248_S+ROS_SH-LA1511_C+ROS_RO 0.0000000
## LA1511_S_RO-LA1511_C+ROS_SH 0.0091806
## LA1511_S_SH-LA1511_C+ROS_SH 0.0000000
## LA1511_S+ASC_RO-LA1511_C+ROS_SH 0.0674125
## LA1511_S+ASC_SH-LA1511_C+ROS_SH 0.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_SH 0.0004776
## LA1511_S+ROS_SH-LA1511_C+ROS_SH 0.0000000
## M248_C_RO-LA1511_C+ROS_SH 1.0000000
## M248_C_SH-LA1511_C+ROS_SH 1.0000000
## M248_C+ASC_RO-LA1511_C+ROS_SH 1.0000000
## M248_C+ASC_SH-LA1511_C+ROS_SH 1.0000000
## M248_C+ROS_RO-LA1511_C+ROS_SH 1.0000000
## M248_C+ROS_SH-LA1511_C+ROS_SH 1.0000000
## M248_S_RO-LA1511_C+ROS_SH 0.0168009
## M248_S_SH-LA1511_C+ROS_SH 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_SH 0.0043998
## M248_S+ASC_SH-LA1511_C+ROS_SH 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_SH 0.0038080
## M248_S+ROS_SH-LA1511_C+ROS_SH 0.0000000
## LA1511_S_SH-LA1511_S_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_S_RO 1.0000000
## LA1511_S+ASC_SH-LA1511_S_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_S_RO 1.0000000
## LA1511_S+ROS_SH-LA1511_S_RO 0.0000000
## M248_C_RO-LA1511_S_RO 0.0065013
## M248_C_SH-LA1511_S_RO 0.0090450
## M248_C+ASC_RO-LA1511_S_RO 0.0062863
## M248_C+ASC_SH-LA1511_S_RO 0.0085416
## M248_C+ROS_RO-LA1511_S_RO 0.0069194
## M248_C+ROS_SH-LA1511_S_RO 0.0083457
## M248_S_RO-LA1511_S_RO 1.0000000
## M248_S_SH-LA1511_S_RO 0.0000000
## M248_S+ASC_RO-LA1511_S_RO 1.0000000
## M248_S+ASC_SH-LA1511_S_RO 0.0000000
## M248_S+ROS_RO-LA1511_S_RO 1.0000000
## M248_S+ROS_SH-LA1511_S_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_S_SH 0.0000000
## LA1511_S+ASC_SH-LA1511_S_SH 0.0007802
## LA1511_S+ROS_RO-LA1511_S_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_S_SH 1.0000000
## M248_C_RO-LA1511_S_SH 0.0000000
## M248_C_SH-LA1511_S_SH 0.0000000
## M248_C+ASC_RO-LA1511_S_SH 0.0000000
## M248_C+ASC_SH-LA1511_S_SH 0.0000000
## M248_C+ROS_RO-LA1511_S_SH 0.0000000
## M248_C+ROS_SH-LA1511_S_SH 0.0000000
## M248_S_RO-LA1511_S_SH 0.0000000
## M248_S_SH-LA1511_S_SH 0.9291700
## M248_S+ASC_RO-LA1511_S_SH 0.0000000
## M248_S+ASC_SH-LA1511_S_SH 0.8010390
## M248_S+ROS_RO-LA1511_S_SH 0.0000000
## M248_S+ROS_SH-LA1511_S_SH 0.0000239
## LA1511_S+ASC_SH-LA1511_S+ASC_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_S+ASC_RO 0.9991119
## LA1511_S+ROS_SH-LA1511_S+ASC_RO 0.0000000
## M248_C_RO-LA1511_S+ASC_RO 0.0502638
## M248_C_SH-LA1511_S+ASC_RO 0.0665715
## M248_C+ASC_RO-LA1511_S+ASC_RO 0.0488335
## M248_C+ASC_SH-LA1511_S+ASC_RO 0.0634262
## M248_C+ROS_RO-LA1511_S+ASC_RO 0.0530195
## M248_C+ROS_SH-LA1511_S+ASC_RO 0.0621918
## M248_S_RO-LA1511_S+ASC_RO 1.0000000
## M248_S_SH-LA1511_S+ASC_RO 0.0000000
## M248_S+ASC_RO-LA1511_S+ASC_RO 0.9999999
## M248_S+ASC_SH-LA1511_S+ASC_RO 0.0000000
## M248_S+ROS_RO-LA1511_S+ASC_RO 0.9999998
## M248_S+ROS_SH-LA1511_S+ASC_RO 0.0000000
## LA1511_S+ROS_RO-LA1511_S+ASC_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_S+ASC_SH 0.0017420
## M248_C_RO-LA1511_S+ASC_SH 0.0000000
## M248_C_SH-LA1511_S+ASC_SH 0.0000000
## M248_C+ASC_RO-LA1511_S+ASC_SH 0.0000000
## M248_C+ASC_SH-LA1511_S+ASC_SH 0.0000000
## M248_C+ROS_RO-LA1511_S+ASC_SH 0.0000000
## M248_C+ROS_SH-LA1511_S+ASC_SH 0.0000000
## M248_S_RO-LA1511_S+ASC_SH 0.0000000
## M248_S_SH-LA1511_S+ASC_SH 0.0000000
## M248_S+ASC_RO-LA1511_S+ASC_SH 0.0000000
## M248_S+ASC_SH-LA1511_S+ASC_SH 0.5521563
## M248_S+ROS_RO-LA1511_S+ASC_SH 0.0000000
## M248_S+ROS_SH-LA1511_S+ASC_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_S+ROS_RO 0.0000000
## M248_C_RO-LA1511_S+ROS_RO 0.0003147
## M248_C_SH-LA1511_S+ROS_RO 0.0004690
## M248_C+ASC_RO-LA1511_S+ROS_RO 0.0003022
## M248_C+ASC_SH-LA1511_S+ROS_RO 0.0004375
## M248_C+ROS_RO-LA1511_S+ROS_RO 0.0003392
## M248_C+ROS_SH-LA1511_S+ROS_RO 0.0004254
## M248_S_RO-LA1511_S+ROS_RO 1.0000000
## M248_S_SH-LA1511_S+ROS_RO 0.0000000
## M248_S+ASC_RO-LA1511_S+ROS_RO 1.0000000
## M248_S+ASC_SH-LA1511_S+ROS_RO 0.0000000
## M248_S+ROS_RO-LA1511_S+ROS_RO 1.0000000
## M248_S+ROS_SH-LA1511_S+ROS_RO 0.0000000
## M248_C_RO-LA1511_S+ROS_SH 0.0000000
## M248_C_SH-LA1511_S+ROS_SH 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_SH 0.0000000
## M248_C+ASC_SH-LA1511_S+ROS_SH 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_SH 0.0000000
## M248_C+ROS_SH-LA1511_S+ROS_SH 0.0000000
## M248_S_RO-LA1511_S+ROS_SH 0.0000000
## M248_S_SH-LA1511_S+ROS_SH 0.6764635
## M248_S+ASC_RO-LA1511_S+ROS_SH 0.0000000
## M248_S+ASC_SH-LA1511_S+ROS_SH 0.9380713
## M248_S+ROS_RO-LA1511_S+ROS_SH 0.0000000
## M248_S+ROS_SH-LA1511_S+ROS_SH 0.0000012
## M248_C_SH-M248_C_RO 1.0000000
## M248_C+ASC_RO-M248_C_RO 1.0000000
## M248_C+ASC_SH-M248_C_RO 1.0000000
## M248_C+ROS_RO-M248_C_RO 1.0000000
## M248_C+ROS_SH-M248_C_RO 1.0000000
## M248_S_RO-M248_C_RO 0.0120875
## M248_S_SH-M248_C_RO 0.0000000
## M248_S+ASC_RO-M248_C_RO 0.0030217
## M248_S+ASC_SH-M248_C_RO 0.0000000
## M248_S+ROS_RO-M248_C_RO 0.0026070
## M248_S+ROS_SH-M248_C_RO 0.0000000
## M248_C+ASC_RO-M248_C_SH 1.0000000
## M248_C+ASC_SH-M248_C_SH 1.0000000
## M248_C+ROS_RO-M248_C_SH 1.0000000
## M248_C+ROS_SH-M248_C_SH 1.0000000
## M248_S_RO-M248_C_SH 0.0165644
## M248_S_SH-M248_C_SH 0.0000000
## M248_S+ASC_RO-M248_C_SH 0.0043290
## M248_S+ASC_SH-M248_C_SH 0.0000000
## M248_S+ROS_RO-M248_C_SH 0.0037462
## M248_S+ROS_SH-M248_C_SH 0.0000000
## M248_C+ASC_SH-M248_C+ASC_RO 1.0000000
## M248_C+ROS_RO-M248_C+ASC_RO 1.0000000
## M248_C+ROS_SH-M248_C+ASC_RO 1.0000000
## M248_S_RO-M248_C+ASC_RO 0.0117051
## M248_S_SH-M248_C+ASC_RO 0.0000000
## M248_S+ASC_RO-M248_C+ASC_RO 0.0029132
## M248_S+ASC_SH-M248_C+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_C+ASC_RO 0.0025126
## M248_S+ROS_SH-M248_C+ASC_RO 0.0000000
## M248_C+ROS_RO-M248_C+ASC_SH 1.0000000
## M248_C+ROS_SH-M248_C+ASC_SH 1.0000000
## M248_S_RO-M248_C+ASC_SH 0.0156847
## M248_S_SH-M248_C+ASC_SH 0.0000000
## M248_S+ASC_RO-M248_C+ASC_SH 0.0040671
## M248_S+ASC_SH-M248_C+ASC_SH 0.0000000
## M248_S+ROS_RO-M248_C+ASC_SH 0.0035177
## M248_S+ROS_SH-M248_C+ASC_SH 0.0000000
## M248_C+ROS_SH-M248_C+ROS_RO 1.0000000
## M248_S_RO-M248_C+ROS_RO 0.0128290
## M248_S_SH-M248_C+ROS_RO 0.0000000
## M248_S+ASC_RO-M248_C+ROS_RO 0.0032336
## M248_S+ASC_SH-M248_C+ROS_RO 0.0000000
## M248_S+ROS_RO-M248_C+ROS_RO 0.0027914
## M248_S+ROS_SH-M248_C+ROS_RO 0.0000000
## M248_S_RO-M248_C+ROS_SH 0.0153415
## M248_S_SH-M248_C+ROS_SH 0.0000000
## M248_S+ASC_RO-M248_C+ROS_SH 0.0039656
## M248_S+ASC_SH-M248_C+ROS_SH 0.0000000
## M248_S+ROS_RO-M248_C+ROS_SH 0.0034291
## M248_S+ROS_SH-M248_C+ROS_SH 0.0000000
## M248_S_SH-M248_S_RO 0.0000000
## M248_S+ASC_RO-M248_S_RO 1.0000000
## M248_S+ASC_SH-M248_S_RO 0.0000000
## M248_S+ROS_RO-M248_S_RO 1.0000000
## M248_S+ROS_SH-M248_S_RO 0.0000000
## M248_S+ASC_RO-M248_S_SH 0.0000000
## M248_S+ASC_SH-M248_S_SH 0.0044572
## M248_S+ROS_RO-M248_S_SH 0.0000000
## M248_S+ROS_SH-M248_S_SH 0.0812575
## M248_S+ASC_SH-M248_S+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_S+ASC_RO 1.0000000
## M248_S+ROS_SH-M248_S+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_S+ASC_SH 0.0000000
## M248_S+ROS_SH-M248_S+ASC_SH 0.0000000
## M248_S+ROS_SH-M248_S+ROS_RO 0.0000000
P9 = Output$All.ID[,'p adj']
stat.test<- multcompLetters(P9)
stat.test
## LA1511_C_SH LA1511_C+ASC_RO LA1511_C+ASC_SH LA1511_C+ROS_RO LA1511_C+ROS_SH
## "ab" "a" "ab" "ab" "ab"
## LA1511_S_RO LA1511_S_SH LA1511_S+ASC_RO LA1511_S+ASC_SH LA1511_S+ROS_RO
## "c" "de" "bc" "f" "c"
## LA1511_S+ROS_SH M248_C_RO M248_C_SH M248_C+ASC_RO M248_C+ASC_SH
## "de" "ab" "ab" "a" "ab"
## M248_C+ROS_RO M248_C+ROS_SH M248_S_RO M248_S_SH M248_S+ASC_RO
## "ab" "ab" "c" "dg" "c"
## M248_S+ASC_SH M248_S+ROS_RO M248_S+ROS_SH LA1511_C_RO
## "ef" "c" "g" "ab"
test <- as.data.frame(stat.test$Letters)
test$group1 <- rownames(test)
test$group2 <- rownames(test)
colnames(test)[1] <- "Tukey"
test
test$info <- strsplit(test$group1, "_")
test$info[[1]][2]
## [1] "C"
test$info[[1]][3]
## [1] "SH"
test$Accession <- "none"
test$Condition <- "none"
test$Tissue<- "none"
test
for(i in 1:nrow(test)){
test$Accession[i] <- test$info[[i]][1]
test$Condition[i] <- test$info[[i]][2]
test$Tissue[i] <- test$info[[i]][3]
}
test2 <- test[,c(5:7,1)]
test2$group1 <- test2$Condition
test2$group2 <- test2$Condition
ICP
ratio <- ggplot(data = ICP, mapping = aes(x = Condition, y = Na.K.ratio, colour = Condition))
ratio <- ratio + geom_boxplot(alpha=0.2) + geom_jitter(width=0.1,alpha=0.2)
ratio <- ratio + facet_grid(Tissue~Accession , scales = "free_y")
ratio <- ratio + stat_summary(fun=mean, geom="point", shape=95, size=6, color="black", fill="black")
ratio <- ratio + scale_color_manual(values = c("blue", "plum", "rosybrown1", "red","hotpink","green"))
ratio <- ratio + ylab("Na/K ratio") + xlab("")+stat_pvalue_manual(test2, label = "Tukey", y.position = 1.5)
ratio <- ratio + theme(axis.text.x = element_text(angle=90, hjust=0.9, vjust=0.5))
ratio <- ratio + rremove("legend")
ratio
aov(DW.mg ~ All.ID, data = ICP)
## Call:
## aov(formula = DW.mg ~ All.ID, data = ICP)
##
## Terms:
## All.ID Residuals
## Sum of Squares 413.9345 55.5338
## Deg. of Freedom 23 128
##
## Residual standard error: 0.6586789
## Estimated effects may be unbalanced
Output <- TukeyHSD(aov(DW.mg ~ All.ID, data = ICP))
Output
## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = DW.mg ~ All.ID, data = ICP)
##
## $All.ID
## diff lwr upr
## LA1511_C_SH-LA1511_C_RO 2.716667e+00 1.30264337 4.130689962
## LA1511_C+ASC_RO-LA1511_C_RO -3.666667e-01 -1.78068996 1.047356628
## LA1511_C+ASC_SH-LA1511_C_RO 3.116667e+00 1.70264337 4.530689962
## LA1511_C+ROS_RO-LA1511_C_RO -4.000000e-01 -1.81402329 1.014023295
## LA1511_C+ROS_SH-LA1511_C_RO 1.883333e+00 0.46931004 3.297356628
## LA1511_S_RO-LA1511_C_RO -7.166667e-01 -2.13068996 0.697356628
## LA1511_S_SH-LA1511_C_RO 9.166667e-01 -0.49735663 2.330689962
## LA1511_S+ASC_RO-LA1511_C_RO -5.833333e-01 -1.94592027 0.779253608
## LA1511_S+ASC_SH-LA1511_C_RO 1.588095e+00 0.22550830 2.950682179
## LA1511_S+ROS_RO-LA1511_C_RO -8.404762e-01 -2.20306313 0.522110751
## LA1511_S+ROS_SH-LA1511_C_RO 5.166667e-01 -0.84592027 1.879253608
## M248_C_RO-LA1511_C_RO 3.833333e-01 -1.03068996 1.797356628
## M248_C_SH-LA1511_C_RO 3.583333e+00 2.16931004 4.997356628
## M248_C+ASC_RO-LA1511_C_RO 1.666667e-01 -1.24735663 1.580689962
## M248_C+ASC_SH-LA1511_C_RO 3.600000e+00 2.18597671 5.014023295
## M248_C+ROS_RO-LA1511_C_RO -4.500000e-01 -1.86402329 0.964023295
## M248_C+ROS_SH-LA1511_C_RO 3.400000e+00 1.98597671 4.814023295
## M248_S_RO-LA1511_C_RO -4.500000e-01 -1.86402329 0.964023295
## M248_S_SH-LA1511_C_RO 3.716667e+00 2.30264337 5.130689962
## M248_S+ASC_RO-LA1511_C_RO -9.547619e-01 -2.31734885 0.407825037
## M248_S+ASC_SH-LA1511_C_RO 3.116667e+00 1.75407973 4.479253608
## M248_S+ROS_RO-LA1511_C_RO -6.261905e-01 -1.98877742 0.736396465
## M248_S+ROS_SH-LA1511_C_RO 1.845238e+00 0.48265115 3.207825037
## LA1511_C+ASC_RO-LA1511_C_SH -3.083333e+00 -4.49735663 -1.669310038
## LA1511_C+ASC_SH-LA1511_C_SH 4.000000e-01 -1.01402329 1.814023295
## LA1511_C+ROS_RO-LA1511_C_SH -3.116667e+00 -4.53068996 -1.702643372
## LA1511_C+ROS_SH-LA1511_C_SH -8.333333e-01 -2.24735663 0.580689962
## LA1511_S_RO-LA1511_C_SH -3.433333e+00 -4.84735663 -2.019310038
## LA1511_S_SH-LA1511_C_SH -1.800000e+00 -3.21402329 -0.385976705
## LA1511_S+ASC_RO-LA1511_C_SH -3.300000e+00 -4.66258694 -1.937413059
## LA1511_S+ASC_SH-LA1511_C_SH -1.128571e+00 -2.49115837 0.234015513
## LA1511_S+ROS_RO-LA1511_C_SH -3.557143e+00 -4.91972980 -2.194555916
## LA1511_S+ROS_SH-LA1511_C_SH -2.200000e+00 -3.56258694 -0.837413059
## M248_C_RO-LA1511_C_SH -2.333333e+00 -3.74735663 -0.919310038
## M248_C_SH-LA1511_C_SH 8.666667e-01 -0.54735663 2.280689962
## M248_C+ASC_RO-LA1511_C_SH -2.550000e+00 -3.96402329 -1.135976705
## M248_C+ASC_SH-LA1511_C_SH 8.833333e-01 -0.53068996 2.297356628
## M248_C+ROS_RO-LA1511_C_SH -3.166667e+00 -4.58068996 -1.752643372
## M248_C+ROS_SH-LA1511_C_SH 6.833333e-01 -0.73068996 2.097356628
## M248_S_RO-LA1511_C_SH -3.166667e+00 -4.58068996 -1.752643372
## M248_S_SH-LA1511_C_SH 1.000000e+00 -0.41402329 2.414023295
## M248_S+ASC_RO-LA1511_C_SH -3.671429e+00 -5.03401551 -2.308841630
## M248_S+ASC_SH-LA1511_C_SH 4.000000e-01 -0.96258694 1.762586941
## M248_S+ROS_RO-LA1511_C_SH -3.342857e+00 -4.70544408 -1.980270201
## M248_S+ROS_SH-LA1511_C_SH -8.714286e-01 -2.23401551 0.491158370
## LA1511_C+ASC_SH-LA1511_C+ASC_RO 3.483333e+00 2.06931004 4.897356628
## LA1511_C+ROS_RO-LA1511_C+ASC_RO -3.333333e-02 -1.44735663 1.380689962
## LA1511_C+ROS_SH-LA1511_C+ASC_RO 2.250000e+00 0.83597671 3.664023295
## LA1511_S_RO-LA1511_C+ASC_RO -3.500000e-01 -1.76402329 1.064023295
## LA1511_S_SH-LA1511_C+ASC_RO 1.283333e+00 -0.13068996 2.697356628
## LA1511_S+ASC_RO-LA1511_C+ASC_RO -2.166667e-01 -1.57925361 1.145920275
## LA1511_S+ASC_SH-LA1511_C+ASC_RO 1.954762e+00 0.59217496 3.317348846
## LA1511_S+ROS_RO-LA1511_C+ASC_RO -4.738095e-01 -1.83639647 0.888777418
## LA1511_S+ROS_SH-LA1511_C+ASC_RO 8.833333e-01 -0.47925361 2.245920275
## M248_C_RO-LA1511_C+ASC_RO 7.500000e-01 -0.66402329 2.164023295
## M248_C_SH-LA1511_C+ASC_RO 3.950000e+00 2.53597671 5.364023295
## M248_C+ASC_RO-LA1511_C+ASC_RO 5.333333e-01 -0.88068996 1.947356628
## M248_C+ASC_SH-LA1511_C+ASC_RO 3.966667e+00 2.55264337 5.380689962
## M248_C+ROS_RO-LA1511_C+ASC_RO -8.333333e-02 -1.49735663 1.330689962
## M248_C+ROS_SH-LA1511_C+ASC_RO 3.766667e+00 2.35264337 5.180689962
## M248_S_RO-LA1511_C+ASC_RO -8.333333e-02 -1.49735663 1.330689962
## M248_S_SH-LA1511_C+ASC_RO 4.083333e+00 2.66931004 5.497356628
## M248_S+ASC_RO-LA1511_C+ASC_RO -5.880952e-01 -1.95068218 0.774491703
## M248_S+ASC_SH-LA1511_C+ASC_RO 3.483333e+00 2.12074639 4.845920275
## M248_S+ROS_RO-LA1511_C+ASC_RO -2.595238e-01 -1.62211075 1.103063132
## M248_S+ROS_SH-LA1511_C+ASC_RO 2.211905e+00 0.84931782 3.574491703
## LA1511_C+ROS_RO-LA1511_C+ASC_SH -3.516667e+00 -4.93068996 -2.102643372
## LA1511_C+ROS_SH-LA1511_C+ASC_SH -1.233333e+00 -2.64735663 0.180689962
## LA1511_S_RO-LA1511_C+ASC_SH -3.833333e+00 -5.24735663 -2.419310038
## LA1511_S_SH-LA1511_C+ASC_SH -2.200000e+00 -3.61402329 -0.785976705
## LA1511_S+ASC_RO-LA1511_C+ASC_SH -3.700000e+00 -5.06258694 -2.337413059
## LA1511_S+ASC_SH-LA1511_C+ASC_SH -1.528571e+00 -2.89115837 -0.165984487
## LA1511_S+ROS_RO-LA1511_C+ASC_SH -3.957143e+00 -5.31972980 -2.594555916
## LA1511_S+ROS_SH-LA1511_C+ASC_SH -2.600000e+00 -3.96258694 -1.237413059
## M248_C_RO-LA1511_C+ASC_SH -2.733333e+00 -4.14735663 -1.319310038
## M248_C_SH-LA1511_C+ASC_SH 4.666667e-01 -0.94735663 1.880689962
## M248_C+ASC_RO-LA1511_C+ASC_SH -2.950000e+00 -4.36402329 -1.535976705
## M248_C+ASC_SH-LA1511_C+ASC_SH 4.833333e-01 -0.93068996 1.897356628
## M248_C+ROS_RO-LA1511_C+ASC_SH -3.566667e+00 -4.98068996 -2.152643372
## M248_C+ROS_SH-LA1511_C+ASC_SH 2.833333e-01 -1.13068996 1.697356628
## M248_S_RO-LA1511_C+ASC_SH -3.566667e+00 -4.98068996 -2.152643372
## M248_S_SH-LA1511_C+ASC_SH 6.000000e-01 -0.81402329 2.014023295
## M248_S+ASC_RO-LA1511_C+ASC_SH -4.071429e+00 -5.43401551 -2.708841630
## M248_S+ASC_SH-LA1511_C+ASC_SH -1.776357e-14 -1.36258694 1.362586941
## M248_S+ROS_RO-LA1511_C+ASC_SH -3.742857e+00 -5.10544408 -2.380270201
## M248_S+ROS_SH-LA1511_C+ASC_SH -1.271429e+00 -2.63401551 0.091158370
## LA1511_C+ROS_SH-LA1511_C+ROS_RO 2.283333e+00 0.86931004 3.697356628
## LA1511_S_RO-LA1511_C+ROS_RO -3.166667e-01 -1.73068996 1.097356628
## LA1511_S_SH-LA1511_C+ROS_RO 1.316667e+00 -0.09735663 2.730689962
## LA1511_S+ASC_RO-LA1511_C+ROS_RO -1.833333e-01 -1.54592027 1.179253608
## LA1511_S+ASC_SH-LA1511_C+ROS_RO 1.988095e+00 0.62550830 3.350682179
## LA1511_S+ROS_RO-LA1511_C+ROS_RO -4.404762e-01 -1.80306313 0.922110751
## LA1511_S+ROS_SH-LA1511_C+ROS_RO 9.166667e-01 -0.44592027 2.279253608
## M248_C_RO-LA1511_C+ROS_RO 7.833333e-01 -0.63068996 2.197356628
## M248_C_SH-LA1511_C+ROS_RO 3.983333e+00 2.56931004 5.397356628
## M248_C+ASC_RO-LA1511_C+ROS_RO 5.666667e-01 -0.84735663 1.980689962
## M248_C+ASC_SH-LA1511_C+ROS_RO 4.000000e+00 2.58597671 5.414023295
## M248_C+ROS_RO-LA1511_C+ROS_RO -5.000000e-02 -1.46402329 1.364023295
## M248_C+ROS_SH-LA1511_C+ROS_RO 3.800000e+00 2.38597671 5.214023295
## M248_S_RO-LA1511_C+ROS_RO -5.000000e-02 -1.46402329 1.364023295
## M248_S_SH-LA1511_C+ROS_RO 4.116667e+00 2.70264337 5.530689962
## M248_S+ASC_RO-LA1511_C+ROS_RO -5.547619e-01 -1.91734885 0.807825037
## M248_S+ASC_SH-LA1511_C+ROS_RO 3.516667e+00 2.15407973 4.879253608
## M248_S+ROS_RO-LA1511_C+ROS_RO -2.261905e-01 -1.58877742 1.136396465
## M248_S+ROS_SH-LA1511_C+ROS_RO 2.245238e+00 0.88265115 3.607825037
## LA1511_S_RO-LA1511_C+ROS_SH -2.600000e+00 -4.01402329 -1.185976705
## LA1511_S_SH-LA1511_C+ROS_SH -9.666667e-01 -2.38068996 0.447356628
## LA1511_S+ASC_RO-LA1511_C+ROS_SH -2.466667e+00 -3.82925361 -1.104079725
## LA1511_S+ASC_SH-LA1511_C+ROS_SH -2.952381e-01 -1.65782504 1.067348846
## LA1511_S+ROS_RO-LA1511_C+ROS_SH -2.723810e+00 -4.08639647 -1.361222582
## LA1511_S+ROS_SH-LA1511_C+ROS_SH -1.366667e+00 -2.72925361 -0.004079725
## M248_C_RO-LA1511_C+ROS_SH -1.500000e+00 -2.91402329 -0.085976705
## M248_C_SH-LA1511_C+ROS_SH 1.700000e+00 0.28597671 3.114023295
## M248_C+ASC_RO-LA1511_C+ROS_SH -1.716667e+00 -3.13068996 -0.302643372
## M248_C+ASC_SH-LA1511_C+ROS_SH 1.716667e+00 0.30264337 3.130689962
## M248_C+ROS_RO-LA1511_C+ROS_SH -2.333333e+00 -3.74735663 -0.919310038
## M248_C+ROS_SH-LA1511_C+ROS_SH 1.516667e+00 0.10264337 2.930689962
## M248_S_RO-LA1511_C+ROS_SH -2.333333e+00 -3.74735663 -0.919310038
## M248_S_SH-LA1511_C+ROS_SH 1.833333e+00 0.41931004 3.247356628
## M248_S+ASC_RO-LA1511_C+ROS_SH -2.838095e+00 -4.20068218 -1.475508297
## M248_S+ASC_SH-LA1511_C+ROS_SH 1.233333e+00 -0.12925361 2.595920275
## M248_S+ROS_RO-LA1511_C+ROS_SH -2.509524e+00 -3.87211075 -1.146936868
## M248_S+ROS_SH-LA1511_C+ROS_SH -3.809524e-02 -1.40068218 1.324491703
## LA1511_S_SH-LA1511_S_RO 1.633333e+00 0.21931004 3.047356628
## LA1511_S+ASC_RO-LA1511_S_RO 1.333333e-01 -1.22925361 1.495920275
## LA1511_S+ASC_SH-LA1511_S_RO 2.304762e+00 0.94217496 3.667348846
## LA1511_S+ROS_RO-LA1511_S_RO -1.238095e-01 -1.48639647 1.238777418
## LA1511_S+ROS_SH-LA1511_S_RO 1.233333e+00 -0.12925361 2.595920275
## M248_C_RO-LA1511_S_RO 1.100000e+00 -0.31402329 2.514023295
## M248_C_SH-LA1511_S_RO 4.300000e+00 2.88597671 5.714023295
## M248_C+ASC_RO-LA1511_S_RO 8.833333e-01 -0.53068996 2.297356628
## M248_C+ASC_SH-LA1511_S_RO 4.316667e+00 2.90264337 5.730689962
## M248_C+ROS_RO-LA1511_S_RO 2.666667e-01 -1.14735663 1.680689962
## M248_C+ROS_SH-LA1511_S_RO 4.116667e+00 2.70264337 5.530689962
## M248_S_RO-LA1511_S_RO 2.666667e-01 -1.14735663 1.680689962
## M248_S_SH-LA1511_S_RO 4.433333e+00 3.01931004 5.847356628
## M248_S+ASC_RO-LA1511_S_RO -2.380952e-01 -1.60068218 1.124491703
## M248_S+ASC_SH-LA1511_S_RO 3.833333e+00 2.47074639 5.195920275
## M248_S+ROS_RO-LA1511_S_RO 9.047619e-02 -1.27211075 1.453063132
## M248_S+ROS_SH-LA1511_S_RO 2.561905e+00 1.19931782 3.924491703
## LA1511_S+ASC_RO-LA1511_S_SH -1.500000e+00 -2.86258694 -0.137413059
## LA1511_S+ASC_SH-LA1511_S_SH 6.714286e-01 -0.69115837 2.034015513
## LA1511_S+ROS_RO-LA1511_S_SH -1.757143e+00 -3.11972980 -0.394555916
## LA1511_S+ROS_SH-LA1511_S_SH -4.000000e-01 -1.76258694 0.962586941
## M248_C_RO-LA1511_S_SH -5.333333e-01 -1.94735663 0.880689962
## M248_C_SH-LA1511_S_SH 2.666667e+00 1.25264337 4.080689962
## M248_C+ASC_RO-LA1511_S_SH -7.500000e-01 -2.16402329 0.664023295
## M248_C+ASC_SH-LA1511_S_SH 2.683333e+00 1.26931004 4.097356628
## M248_C+ROS_RO-LA1511_S_SH -1.366667e+00 -2.78068996 0.047356628
## M248_C+ROS_SH-LA1511_S_SH 2.483333e+00 1.06931004 3.897356628
## M248_S_RO-LA1511_S_SH -1.366667e+00 -2.78068996 0.047356628
## M248_S_SH-LA1511_S_SH 2.800000e+00 1.38597671 4.214023295
## M248_S+ASC_RO-LA1511_S_SH -1.871429e+00 -3.23401551 -0.508841630
## M248_S+ASC_SH-LA1511_S_SH 2.200000e+00 0.83741306 3.562586941
## M248_S+ROS_RO-LA1511_S_SH -1.542857e+00 -2.90544408 -0.180270201
## M248_S+ROS_SH-LA1511_S_SH 9.285714e-01 -0.43401551 2.291158370
## LA1511_S+ASC_SH-LA1511_S+ASC_RO 2.171429e+00 0.86229738 3.480559759
## LA1511_S+ROS_RO-LA1511_S+ASC_RO -2.571429e-01 -1.56627405 1.051988331
## LA1511_S+ROS_SH-LA1511_S+ASC_RO 1.100000e+00 -0.20913119 2.409131188
## M248_C_RO-LA1511_S+ASC_RO 9.666667e-01 -0.39592027 2.329253608
## M248_C_SH-LA1511_S+ASC_RO 4.166667e+00 2.80407973 5.529253608
## M248_C+ASC_RO-LA1511_S+ASC_RO 7.500000e-01 -0.61258694 2.112586941
## M248_C+ASC_SH-LA1511_S+ASC_RO 4.183333e+00 2.82074639 5.545920275
## M248_C+ROS_RO-LA1511_S+ASC_RO 1.333333e-01 -1.22925361 1.495920275
## M248_C+ROS_SH-LA1511_S+ASC_RO 3.983333e+00 2.62074639 5.345920275
## M248_S_RO-LA1511_S+ASC_RO 1.333333e-01 -1.22925361 1.495920275
## M248_S_SH-LA1511_S+ASC_RO 4.300000e+00 2.93741306 5.662586941
## M248_S+ASC_RO-LA1511_S+ASC_RO -3.714286e-01 -1.68055976 0.937702617
## M248_S+ASC_SH-LA1511_S+ASC_RO 3.700000e+00 2.39086881 5.009131188
## M248_S+ROS_RO-LA1511_S+ASC_RO -4.285714e-02 -1.35198833 1.266274045
## M248_S+ROS_SH-LA1511_S+ASC_RO 2.428571e+00 1.11944024 3.737702617
## LA1511_S+ROS_RO-LA1511_S+ASC_SH -2.428571e+00 -3.73770262 -1.119440241
## LA1511_S+ROS_SH-LA1511_S+ASC_SH -1.071429e+00 -2.38055976 0.237702617
## M248_C_RO-LA1511_S+ASC_SH -1.204762e+00 -2.56734885 0.157825037
## M248_C_SH-LA1511_S+ASC_SH 1.995238e+00 0.63265115 3.357825037
## M248_C+ASC_RO-LA1511_S+ASC_SH -1.421429e+00 -2.78401551 -0.058841630
## M248_C+ASC_SH-LA1511_S+ASC_SH 2.011905e+00 0.64931782 3.374491703
## M248_C+ROS_RO-LA1511_S+ASC_SH -2.038095e+00 -3.40068218 -0.675508297
## M248_C+ROS_SH-LA1511_S+ASC_SH 1.811905e+00 0.44931782 3.174491703
## M248_S_RO-LA1511_S+ASC_SH -2.038095e+00 -3.40068218 -0.675508297
## M248_S_SH-LA1511_S+ASC_SH 2.128571e+00 0.76598449 3.491158370
## M248_S+ASC_RO-LA1511_S+ASC_SH -2.542857e+00 -3.85198833 -1.233725955
## M248_S+ASC_SH-LA1511_S+ASC_SH 1.528571e+00 0.21944024 2.837702617
## M248_S+ROS_RO-LA1511_S+ASC_SH -2.214286e+00 -3.52341690 -0.905154526
## M248_S+ROS_SH-LA1511_S+ASC_SH 2.571429e-01 -1.05198833 1.566274045
## LA1511_S+ROS_SH-LA1511_S+ROS_RO 1.357143e+00 0.04801167 2.666274045
## M248_C_RO-LA1511_S+ROS_RO 1.223810e+00 -0.13877742 2.586396465
## M248_C_SH-LA1511_S+ROS_RO 4.423810e+00 3.06122258 5.786396465
## M248_C+ASC_RO-LA1511_S+ROS_RO 1.007143e+00 -0.35544408 2.369729799
## M248_C+ASC_SH-LA1511_S+ROS_RO 4.440476e+00 3.07788925 5.803063132
## M248_C+ROS_RO-LA1511_S+ROS_RO 3.904762e-01 -0.97211075 1.753063132
## M248_C+ROS_SH-LA1511_S+ROS_RO 4.240476e+00 2.87788925 5.603063132
## M248_S_RO-LA1511_S+ROS_RO 3.904762e-01 -0.97211075 1.753063132
## M248_S_SH-LA1511_S+ROS_RO 4.557143e+00 3.19455592 5.919729799
## M248_S+ASC_RO-LA1511_S+ROS_RO -1.142857e-01 -1.42341690 1.194845474
## M248_S+ASC_SH-LA1511_S+ROS_RO 3.957143e+00 2.64801167 5.266274045
## M248_S+ROS_RO-LA1511_S+ROS_RO 2.142857e-01 -1.09484547 1.523416902
## M248_S+ROS_SH-LA1511_S+ROS_RO 2.685714e+00 1.37658310 3.994845474
## M248_C_RO-LA1511_S+ROS_SH -1.333333e-01 -1.49592027 1.229253608
## M248_C_SH-LA1511_S+ROS_SH 3.066667e+00 1.70407973 4.429253608
## M248_C+ASC_RO-LA1511_S+ROS_SH -3.500000e-01 -1.71258694 1.012586941
## M248_C+ASC_SH-LA1511_S+ROS_SH 3.083333e+00 1.72074639 4.445920275
## M248_C+ROS_RO-LA1511_S+ROS_SH -9.666667e-01 -2.32925361 0.395920275
## M248_C+ROS_SH-LA1511_S+ROS_SH 2.883333e+00 1.52074639 4.245920275
## M248_S_RO-LA1511_S+ROS_SH -9.666667e-01 -2.32925361 0.395920275
## M248_S_SH-LA1511_S+ROS_SH 3.200000e+00 1.83741306 4.562586941
## M248_S+ASC_RO-LA1511_S+ROS_SH -1.471429e+00 -2.78055976 -0.162297383
## M248_S+ASC_SH-LA1511_S+ROS_SH 2.600000e+00 1.29086881 3.909131188
## M248_S+ROS_RO-LA1511_S+ROS_SH -1.142857e+00 -2.45198833 0.166274045
## M248_S+ROS_SH-LA1511_S+ROS_SH 1.328571e+00 0.01944024 2.637702617
## M248_C_SH-M248_C_RO 3.200000e+00 1.78597671 4.614023295
## M248_C+ASC_RO-M248_C_RO -2.166667e-01 -1.63068996 1.197356628
## M248_C+ASC_SH-M248_C_RO 3.216667e+00 1.80264337 4.630689962
## M248_C+ROS_RO-M248_C_RO -8.333333e-01 -2.24735663 0.580689962
## M248_C+ROS_SH-M248_C_RO 3.016667e+00 1.60264337 4.430689962
## M248_S_RO-M248_C_RO -8.333333e-01 -2.24735663 0.580689962
## M248_S_SH-M248_C_RO 3.333333e+00 1.91931004 4.747356628
## M248_S+ASC_RO-M248_C_RO -1.338095e+00 -2.70068218 0.024491703
## M248_S+ASC_SH-M248_C_RO 2.733333e+00 1.37074639 4.095920275
## M248_S+ROS_RO-M248_C_RO -1.009524e+00 -2.37211075 0.353063132
## M248_S+ROS_SH-M248_C_RO 1.461905e+00 0.09931782 2.824491703
## M248_C+ASC_RO-M248_C_SH -3.416667e+00 -4.83068996 -2.002643372
## M248_C+ASC_SH-M248_C_SH 1.666667e-02 -1.39735663 1.430689962
## M248_C+ROS_RO-M248_C_SH -4.033333e+00 -5.44735663 -2.619310038
## M248_C+ROS_SH-M248_C_SH -1.833333e-01 -1.59735663 1.230689962
## M248_S_RO-M248_C_SH -4.033333e+00 -5.44735663 -2.619310038
## M248_S_SH-M248_C_SH 1.333333e-01 -1.28068996 1.547356628
## M248_S+ASC_RO-M248_C_SH -4.538095e+00 -5.90068218 -3.175508297
## M248_S+ASC_SH-M248_C_SH -4.666667e-01 -1.82925361 0.895920275
## M248_S+ROS_RO-M248_C_SH -4.209524e+00 -5.57211075 -2.846936868
## M248_S+ROS_SH-M248_C_SH -1.738095e+00 -3.10068218 -0.375508297
## M248_C+ASC_SH-M248_C+ASC_RO 3.433333e+00 2.01931004 4.847356628
## M248_C+ROS_RO-M248_C+ASC_RO -6.166667e-01 -2.03068996 0.797356628
## M248_C+ROS_SH-M248_C+ASC_RO 3.233333e+00 1.81931004 4.647356628
## M248_S_RO-M248_C+ASC_RO -6.166667e-01 -2.03068996 0.797356628
## M248_S_SH-M248_C+ASC_RO 3.550000e+00 2.13597671 4.964023295
## M248_S+ASC_RO-M248_C+ASC_RO -1.121429e+00 -2.48401551 0.241158370
## M248_S+ASC_SH-M248_C+ASC_RO 2.950000e+00 1.58741306 4.312586941
## M248_S+ROS_RO-M248_C+ASC_RO -7.928571e-01 -2.15544408 0.569729799
## M248_S+ROS_SH-M248_C+ASC_RO 1.678571e+00 0.31598449 3.041158370
## M248_C+ROS_RO-M248_C+ASC_SH -4.050000e+00 -5.46402329 -2.635976705
## M248_C+ROS_SH-M248_C+ASC_SH -2.000000e-01 -1.61402329 1.214023295
## M248_S_RO-M248_C+ASC_SH -4.050000e+00 -5.46402329 -2.635976705
## M248_S_SH-M248_C+ASC_SH 1.166667e-01 -1.29735663 1.530689962
## M248_S+ASC_RO-M248_C+ASC_SH -4.554762e+00 -5.91734885 -3.192174963
## M248_S+ASC_SH-M248_C+ASC_SH -4.833333e-01 -1.84592027 0.879253608
## M248_S+ROS_RO-M248_C+ASC_SH -4.226190e+00 -5.58877742 -2.863603535
## M248_S+ROS_SH-M248_C+ASC_SH -1.754762e+00 -3.11734885 -0.392174963
## M248_C+ROS_SH-M248_C+ROS_RO 3.850000e+00 2.43597671 5.264023295
## M248_S_RO-M248_C+ROS_RO 2.886580e-15 -1.41402329 1.414023295
## M248_S_SH-M248_C+ROS_RO 4.166667e+00 2.75264337 5.580689962
## M248_S+ASC_RO-M248_C+ROS_RO -5.047619e-01 -1.86734885 0.857825037
## M248_S+ASC_SH-M248_C+ROS_RO 3.566667e+00 2.20407973 4.929253608
## M248_S+ROS_RO-M248_C+ROS_RO -1.761905e-01 -1.53877742 1.186396465
## M248_S+ROS_SH-M248_C+ROS_RO 2.295238e+00 0.93265115 3.657825037
## M248_S_RO-M248_C+ROS_SH -3.850000e+00 -5.26402329 -2.435976705
## M248_S_SH-M248_C+ROS_SH 3.166667e-01 -1.09735663 1.730689962
## M248_S+ASC_RO-M248_C+ROS_SH -4.354762e+00 -5.71734885 -2.992174963
## M248_S+ASC_SH-M248_C+ROS_SH -2.833333e-01 -1.64592027 1.079253608
## M248_S+ROS_RO-M248_C+ROS_SH -4.026190e+00 -5.38877742 -2.663603535
## M248_S+ROS_SH-M248_C+ROS_SH -1.554762e+00 -2.91734885 -0.192174963
## M248_S_SH-M248_S_RO 4.166667e+00 2.75264337 5.580689962
## M248_S+ASC_RO-M248_S_RO -5.047619e-01 -1.86734885 0.857825037
## M248_S+ASC_SH-M248_S_RO 3.566667e+00 2.20407973 4.929253608
## M248_S+ROS_RO-M248_S_RO -1.761905e-01 -1.53877742 1.186396465
## M248_S+ROS_SH-M248_S_RO 2.295238e+00 0.93265115 3.657825037
## M248_S+ASC_RO-M248_S_SH -4.671429e+00 -6.03401551 -3.308841630
## M248_S+ASC_SH-M248_S_SH -6.000000e-01 -1.96258694 0.762586941
## M248_S+ROS_RO-M248_S_SH -4.342857e+00 -5.70544408 -2.980270201
## M248_S+ROS_SH-M248_S_SH -1.871429e+00 -3.23401551 -0.508841630
## M248_S+ASC_SH-M248_S+ASC_RO 4.071429e+00 2.76229738 5.380559759
## M248_S+ROS_RO-M248_S+ASC_RO 3.285714e-01 -0.98055976 1.637702617
## M248_S+ROS_SH-M248_S+ASC_RO 2.800000e+00 1.49086881 4.109131188
## M248_S+ROS_RO-M248_S+ASC_SH -3.742857e+00 -5.05198833 -2.433725955
## M248_S+ROS_SH-M248_S+ASC_SH -1.271429e+00 -2.58055976 0.037702617
## M248_S+ROS_SH-M248_S+ROS_RO 2.471429e+00 1.16229738 3.780559759
## p adj
## LA1511_C_SH-LA1511_C_RO 0.0000000
## LA1511_C+ASC_RO-LA1511_C_RO 0.9999989
## LA1511_C+ASC_SH-LA1511_C_RO 0.0000000
## LA1511_C+ROS_RO-LA1511_C_RO 0.9999943
## LA1511_C+ROS_SH-LA1511_C_RO 0.0005506
## LA1511_S_RO-LA1511_C_RO 0.9674267
## LA1511_S_SH-LA1511_C_RO 0.7373080
## LA1511_S+ASC_RO-LA1511_C_RO 0.9957289
## LA1511_S+ASC_SH-LA1511_C_RO 0.0062758
## LA1511_S+ROS_RO-LA1511_C_RO 0.8118888
## LA1511_S+ROS_SH-LA1511_C_RO 0.9992390
## M248_C_RO-LA1511_C_RO 0.9999974
## M248_C_SH-LA1511_C_RO 0.0000000
## M248_C+ASC_RO-LA1511_C_RO 1.0000000
## M248_C+ASC_SH-LA1511_C_RO 0.0000000
## M248_C+ROS_RO-LA1511_C_RO 0.9999546
## M248_C+ROS_SH-LA1511_C_RO 0.0000000
## M248_S_RO-LA1511_C_RO 0.9999546
## M248_S_SH-LA1511_C_RO 0.0000000
## M248_S+ASC_RO-LA1511_C_RO 0.5945272
## M248_S+ASC_SH-LA1511_C_RO 0.0000000
## M248_S+ROS_RO-LA1511_C_RO 0.9894040
## M248_S+ROS_SH-LA1511_C_RO 0.0003887
## LA1511_C+ASC_RO-LA1511_C_SH 0.0000000
## LA1511_C+ASC_SH-LA1511_C_SH 0.9999943
## LA1511_C+ROS_RO-LA1511_C_SH 0.0000000
## LA1511_C+ROS_SH-LA1511_C_SH 0.8668377
## LA1511_S_RO-LA1511_C_SH 0.0000000
## LA1511_S_SH-LA1511_C_SH 0.0013487
## LA1511_S+ASC_RO-LA1511_C_SH 0.0000000
## LA1511_S+ASC_SH-LA1511_C_SH 0.2637514
## LA1511_S+ROS_RO-LA1511_C_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_C_SH 0.0000049
## M248_C_RO-LA1511_C_SH 0.0000026
## M248_C_SH-LA1511_C_SH 0.8203452
## M248_C+ASC_RO-LA1511_C_SH 0.0000002
## M248_C+ASC_SH-LA1511_C_SH 0.7942969
## M248_C+ROS_RO-LA1511_C_SH 0.0000000
## M248_C+ROS_SH-LA1511_C_SH 0.9807621
## M248_S_RO-LA1511_C_SH 0.0000000
## M248_S_SH-LA1511_C_SH 0.5760421
## M248_S+ASC_RO-LA1511_C_SH 0.0000000
## M248_S+ASC_SH-LA1511_C_SH 0.9999889
## M248_S+ROS_RO-LA1511_C_SH 0.0000000
## M248_S+ROS_SH-LA1511_C_SH 0.7591080
## LA1511_C+ASC_SH-LA1511_C+ASC_RO 0.0000000
## LA1511_C+ROS_RO-LA1511_C+ASC_RO 1.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_RO 0.0000075
## LA1511_S_RO-LA1511_C+ASC_RO 0.9999995
## LA1511_S_SH-LA1511_C+ASC_RO 0.1315361
## LA1511_S+ASC_RO-LA1511_C+ASC_RO 1.0000000
## LA1511_S+ASC_SH-LA1511_C+ASC_RO 0.0001069
## LA1511_S+ROS_RO-LA1511_C+ASC_RO 0.9998025
## LA1511_S+ROS_SH-LA1511_C+ASC_RO 0.7372871
## M248_C_RO-LA1511_C+ASC_RO 0.9480580
## M248_C_SH-LA1511_C+ASC_RO 0.0000000
## M248_C+ASC_RO-LA1511_C+ASC_RO 0.9992975
## M248_C+ASC_SH-LA1511_C+ASC_RO 0.0000000
## M248_C+ROS_RO-LA1511_C+ASC_RO 1.0000000
## M248_C+ROS_SH-LA1511_C+ASC_RO 0.0000000
## M248_S_RO-LA1511_C+ASC_RO 1.0000000
## M248_S_SH-LA1511_C+ASC_RO 0.0000000
## M248_S+ASC_RO-LA1511_C+ASC_RO 0.9952414
## M248_S+ASC_SH-LA1511_C+ASC_RO 0.0000000
## M248_S+ROS_RO-LA1511_C+ASC_RO 1.0000000
## M248_S+ROS_SH-LA1511_C+ASC_RO 0.0000042
## LA1511_C+ROS_RO-LA1511_C+ASC_SH 0.0000000
## LA1511_C+ROS_SH-LA1511_C+ASC_SH 0.1823559
## LA1511_S_RO-LA1511_C+ASC_SH 0.0000000
## LA1511_S_SH-LA1511_C+ASC_SH 0.0000138
## LA1511_S+ASC_RO-LA1511_C+ASC_SH 0.0000000
## LA1511_S+ASC_SH-LA1511_C+ASC_SH 0.0112680
## LA1511_S+ROS_RO-LA1511_C+ASC_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ASC_SH 0.0000000
## M248_C_RO-LA1511_C+ASC_SH 0.0000000
## M248_C_SH-LA1511_C+ASC_SH 0.9999161
## M248_C+ASC_RO-LA1511_C+ASC_SH 0.0000000
## M248_C+ASC_SH-LA1511_C+ASC_SH 0.9998504
## M248_C+ROS_RO-LA1511_C+ASC_SH 0.0000000
## M248_C+ROS_SH-LA1511_C+ASC_SH 1.0000000
## M248_S_RO-LA1511_C+ASC_SH 0.0000000
## M248_S_SH-LA1511_C+ASC_SH 0.9962088
## M248_S+ASC_RO-LA1511_C+ASC_SH 0.0000000
## M248_S+ASC_SH-LA1511_C+ASC_SH 1.0000000
## M248_S+ROS_RO-LA1511_C+ASC_SH 0.0000000
## M248_S+ROS_SH-LA1511_C+ASC_SH 0.1023043
## LA1511_C+ROS_SH-LA1511_C+ROS_RO 0.0000049
## LA1511_S_RO-LA1511_C+ROS_RO 0.9999999
## LA1511_S_SH-LA1511_C+ROS_RO 0.1043338
## LA1511_S+ASC_RO-LA1511_C+ROS_RO 1.0000000
## LA1511_S+ASC_SH-LA1511_C+ROS_RO 0.0000714
## LA1511_S+ROS_RO-LA1511_C+ROS_RO 0.9999408
## LA1511_S+ROS_SH-LA1511_C+ROS_RO 0.6726427
## M248_C_RO-LA1511_C+ROS_RO 0.9215328
## M248_C_SH-LA1511_C+ROS_RO 0.0000000
## M248_C+ASC_RO-LA1511_C+ROS_RO 0.9982866
## M248_C+ASC_SH-LA1511_C+ROS_RO 0.0000000
## M248_C+ROS_RO-LA1511_C+ROS_RO 1.0000000
## M248_C+ROS_SH-LA1511_C+ROS_RO 0.0000000
## M248_S_RO-LA1511_C+ROS_RO 1.0000000
## M248_S_SH-LA1511_C+ROS_RO 0.0000000
## M248_S+ASC_RO-LA1511_C+ROS_RO 0.9978554
## M248_S+ASC_SH-LA1511_C+ROS_RO 0.0000000
## M248_S+ROS_RO-LA1511_C+ROS_RO 1.0000000
## M248_S+ROS_SH-LA1511_C+ROS_RO 0.0000027
## LA1511_S_RO-LA1511_C+ROS_SH 0.0000001
## LA1511_S_SH-LA1511_C+ROS_SH 0.6425916
## LA1511_S+ASC_RO-LA1511_C+ROS_SH 0.0000001
## LA1511_S+ASC_SH-LA1511_C+ROS_SH 1.0000000
## LA1511_S+ROS_RO-LA1511_C+ROS_SH 0.0000000
## LA1511_S+ROS_SH-LA1511_C+ROS_SH 0.0483352
## M248_C_RO-LA1511_C+ROS_SH 0.0244361
## M248_C_SH-LA1511_C+ROS_SH 0.0037657
## M248_C+ASC_RO-LA1511_C+ROS_SH 0.0031858
## M248_C+ASC_SH-LA1511_C+ROS_SH 0.0031858
## M248_C+ROS_RO-LA1511_C+ROS_SH 0.0000026
## M248_C+ROS_SH-LA1511_C+ROS_SH 0.0211296
## M248_S_RO-LA1511_C+ROS_SH 0.0000026
## M248_S_SH-LA1511_C+ROS_SH 0.0009464
## M248_S+ASC_RO-LA1511_C+ROS_SH 0.0000000
## M248_S+ASC_SH-LA1511_C+ROS_SH 0.1346380
## M248_S+ROS_RO-LA1511_C+ROS_SH 0.0000001
## M248_S+ROS_SH-LA1511_C+ROS_SH 1.0000000
## LA1511_S_SH-LA1511_S_RO 0.0072305
## LA1511_S+ASC_RO-LA1511_S_RO 1.0000000
## LA1511_S+ASC_SH-LA1511_S_RO 0.0000012
## LA1511_S+ROS_RO-LA1511_S_RO 1.0000000
## LA1511_S+ROS_SH-LA1511_S_RO 0.1346380
## M248_C_RO-LA1511_S_RO 0.3812374
## M248_C_SH-LA1511_S_RO 0.0000000
## M248_C+ASC_RO-LA1511_S_RO 0.7942969
## M248_C+ASC_SH-LA1511_S_RO 0.0000000
## M248_C+ROS_RO-LA1511_S_RO 1.0000000
## M248_C+ROS_SH-LA1511_S_RO 0.0000000
## M248_S_RO-LA1511_S_RO 1.0000000
## M248_S_SH-LA1511_S_RO 0.0000000
## M248_S+ASC_RO-LA1511_S_RO 1.0000000
## M248_S+ASC_SH-LA1511_S_RO 0.0000000
## M248_S+ROS_RO-LA1511_S_RO 1.0000000
## M248_S+ROS_SH-LA1511_S_RO 0.0000000
## LA1511_S+ASC_RO-LA1511_S_SH 0.0147895
## LA1511_S+ASC_SH-LA1511_S_SH 0.9760289
## LA1511_S+ROS_RO-LA1511_S_SH 0.0010516
## LA1511_S+ROS_SH-LA1511_S_SH 0.9999889
## M248_C_RO-LA1511_S_SH 0.9992975
## M248_C_SH-LA1511_S_SH 0.0000000
## M248_C+ASC_RO-LA1511_S_SH 0.9480580
## M248_C+ASC_SH-LA1511_S_SH 0.0000000
## M248_C+ROS_RO-LA1511_S_SH 0.0722682
## M248_C+ROS_SH-LA1511_S_SH 0.0000004
## M248_S_RO-LA1511_S_SH 0.0722682
## M248_S_SH-LA1511_S_SH 0.0000000
## M248_S+ASC_RO-LA1511_S_SH 0.0002870
## M248_S+ASC_SH-LA1511_S_SH 0.0000049
## M248_S+ROS_RO-LA1511_S_SH 0.0098136
## M248_S+ROS_SH-LA1511_S_SH 0.6485769
## LA1511_S+ASC_SH-LA1511_S+ASC_RO 0.0000022
## LA1511_S+ROS_RO-LA1511_S+ASC_RO 1.0000000
## LA1511_S+ROS_SH-LA1511_S+ASC_RO 0.2394961
## M248_C_RO-LA1511_S+ASC_RO 0.5696868
## M248_C_SH-LA1511_S+ASC_RO 0.0000000
## M248_C+ASC_RO-LA1511_S+ASC_RO 0.9260214
## M248_C+ASC_SH-LA1511_S+ASC_RO 0.0000000
## M248_C+ROS_RO-LA1511_S+ASC_RO 1.0000000
## M248_C+ROS_SH-LA1511_S+ASC_RO 0.0000000
## M248_S_RO-LA1511_S+ASC_RO 1.0000000
## M248_S_SH-LA1511_S+ASC_RO 0.0000000
## M248_S+ASC_RO-LA1511_S+ASC_RO 0.9999940
## M248_S+ASC_SH-LA1511_S+ASC_RO 0.0000000
## M248_S+ROS_RO-LA1511_S+ASC_RO 1.0000000
## M248_S+ROS_SH-LA1511_S+ASC_RO 0.0000001
## LA1511_S+ROS_RO-LA1511_S+ASC_SH 0.0000001
## LA1511_S+ROS_SH-LA1511_S+ASC_SH 0.2847516
## M248_C_RO-LA1511_S+ASC_SH 0.1637557
## M248_C_SH-LA1511_S+ASC_SH 0.0000655
## M248_C+ASC_RO-LA1511_S+ASC_SH 0.0302502
## M248_C+ASC_SH-LA1511_S+ASC_SH 0.0000534
## M248_C+ROS_RO-LA1511_S+ASC_SH 0.0000386
## M248_C+ROS_SH-LA1511_S+ASC_SH 0.0005692
## M248_S_RO-LA1511_S+ASC_SH 0.0000386
## M248_S_SH-LA1511_S+ASC_SH 0.0000124
## M248_S+ASC_RO-LA1511_S+ASC_SH 0.0000000
## M248_S+ASC_SH-LA1511_S+ASC_SH 0.0060960
## M248_S+ROS_RO-LA1511_S+ASC_SH 0.0000012
## M248_S+ROS_SH-LA1511_S+ASC_SH 1.0000000
## LA1511_S+ROS_SH-LA1511_S+ROS_RO 0.0326926
## M248_C_RO-LA1511_S+ROS_RO 0.1438604
## M248_C_SH-LA1511_S+ROS_RO 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_RO 0.4856001
## M248_C+ASC_SH-LA1511_S+ROS_RO 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_RO 0.9999928
## M248_C+ROS_SH-LA1511_S+ROS_RO 0.0000000
## M248_S_RO-LA1511_S+ROS_RO 0.9999928
## M248_S_SH-LA1511_S+ROS_RO 0.0000000
## M248_S+ASC_RO-LA1511_S+ROS_RO 1.0000000
## M248_S+ASC_SH-LA1511_S+ROS_RO 0.0000000
## M248_S+ROS_RO-LA1511_S+ROS_RO 1.0000000
## M248_S+ROS_SH-LA1511_S+ROS_RO 0.0000000
## M248_C_RO-LA1511_S+ROS_SH 1.0000000
## M248_C_SH-LA1511_S+ROS_SH 0.0000000
## M248_C+ASC_RO-LA1511_S+ROS_SH 0.9999991
## M248_C+ASC_SH-LA1511_S+ROS_SH 0.0000000
## M248_C+ROS_RO-LA1511_S+ROS_SH 0.5696868
## M248_C+ROS_SH-LA1511_S+ROS_SH 0.0000000
## M248_S_RO-LA1511_S+ROS_SH 0.5696868
## M248_S_SH-LA1511_S+ROS_SH 0.0000000
## M248_S+ASC_RO-LA1511_S+ROS_SH 0.0109534
## M248_S+ASC_SH-LA1511_S+ROS_SH 0.0000000
## M248_S+ROS_RO-LA1511_S+ROS_SH 0.1811079
## M248_S+ROS_SH-LA1511_S+ROS_SH 0.0422082
## M248_C_SH-M248_C_RO 0.0000000
## M248_C+ASC_RO-M248_C_RO 1.0000000
## M248_C+ASC_SH-M248_C_RO 0.0000000
## M248_C+ROS_RO-M248_C_RO 0.8668377
## M248_C+ROS_SH-M248_C_RO 0.0000000
## M248_S_RO-M248_C_RO 0.8668377
## M248_S_SH-M248_C_RO 0.0000000
## M248_S+ASC_RO-M248_C_RO 0.0610767
## M248_S+ASC_SH-M248_C_RO 0.0000000
## M248_S+ROS_RO-M248_C_RO 0.4807237
## M248_S+ROS_SH-M248_C_RO 0.0210511
## M248_C+ASC_RO-M248_C_SH 0.0000000
## M248_C+ASC_SH-M248_C_SH 1.0000000
## M248_C+ROS_RO-M248_C_SH 0.0000000
## M248_C+ROS_SH-M248_C_SH 1.0000000
## M248_S_RO-M248_C_SH 0.0000000
## M248_S_SH-M248_C_SH 1.0000000
## M248_S+ASC_RO-M248_C_SH 0.0000000
## M248_S+ASC_SH-M248_C_SH 0.9998456
## M248_S+ROS_RO-M248_C_SH 0.0000000
## M248_S+ROS_SH-M248_C_SH 0.0012970
## M248_C+ASC_SH-M248_C+ASC_RO 0.0000000
## M248_C+ROS_RO-M248_C+ASC_RO 0.9945448
## M248_C+ROS_SH-M248_C+ASC_RO 0.0000000
## M248_S_RO-M248_C+ASC_RO 0.9945448
## M248_S_SH-M248_C+ASC_RO 0.0000000
## M248_S+ASC_RO-M248_C+ASC_RO 0.2748266
## M248_S+ASC_SH-M248_C+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_C+ASC_RO 0.8798991
## M248_S+ROS_SH-M248_C+ASC_RO 0.0024648
## M248_C+ROS_RO-M248_C+ASC_SH 0.0000000
## M248_C+ROS_SH-M248_C+ASC_SH 1.0000000
## M248_S_RO-M248_C+ASC_SH 0.0000000
## M248_S_SH-M248_C+ASC_SH 1.0000000
## M248_S+ASC_RO-M248_C+ASC_SH 0.0000000
## M248_S+ASC_SH-M248_C+ASC_SH 0.9997286
## M248_S+ROS_RO-M248_C+ASC_SH 0.0000000
## M248_S+ROS_SH-M248_C+ASC_SH 0.0010796
## M248_C+ROS_SH-M248_C+ROS_RO 0.0000000
## M248_S_RO-M248_C+ROS_RO 1.0000000
## M248_S_SH-M248_C+ROS_RO 0.0000000
## M248_S+ASC_RO-M248_C+ROS_RO 0.9994659
## M248_S+ASC_SH-M248_C+ROS_RO 0.0000000
## M248_S+ROS_RO-M248_C+ROS_RO 1.0000000
## M248_S+ROS_SH-M248_C+ROS_RO 0.0000014
## M248_S_RO-M248_C+ROS_SH 0.0000000
## M248_S_SH-M248_C+ROS_SH 0.9999999
## M248_S+ASC_RO-M248_C+ROS_SH 0.0000000
## M248_S+ASC_SH-M248_C+ROS_SH 1.0000000
## M248_S+ROS_RO-M248_C+ROS_SH 0.0000000
## M248_S+ROS_SH-M248_C+ROS_SH 0.0087363
## M248_S_SH-M248_S_RO 0.0000000
## M248_S+ASC_RO-M248_S_RO 0.9994659
## M248_S+ASC_SH-M248_S_RO 0.0000000
## M248_S+ROS_RO-M248_S_RO 1.0000000
## M248_S+ROS_SH-M248_S_RO 0.0000014
## M248_S+ASC_RO-M248_S_SH 0.0000000
## M248_S+ASC_SH-M248_S_SH 0.9938150
## M248_S+ROS_RO-M248_S_SH 0.0000000
## M248_S+ROS_SH-M248_S_SH 0.0002870
## M248_S+ASC_SH-M248_S+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_S+ASC_RO 0.9999994
## M248_S+ROS_SH-M248_S+ASC_RO 0.0000000
## M248_S+ROS_RO-M248_S+ASC_SH 0.0000000
## M248_S+ROS_SH-M248_S+ASC_SH 0.0687147
## M248_S+ROS_SH-M248_S+ROS_RO 0.0000000
P6 = Output$All.ID[,'p adj']
stat.test<- multcompLetters(P6)
stat.test
## LA1511_C_SH LA1511_C+ASC_RO LA1511_C+ASC_SH LA1511_C+ROS_RO LA1511_C+ROS_SH
## "abc" "def" "ab" "def" "acg"
## LA1511_S_RO LA1511_S_SH LA1511_S+ASC_RO LA1511_S+ASC_SH LA1511_S+ROS_RO
## "de" "fgh" "de" "cgh" "d"
## LA1511_S+ROS_SH M248_C_RO M248_C_SH M248_C+ASC_RO M248_C+ASC_SH
## "efh" "defh" "b" "def" "b"
## M248_C+ROS_RO M248_C+ROS_SH M248_S_RO M248_S_SH M248_S+ASC_RO
## "def" "b" "def" "b" "d"
## M248_S+ASC_SH M248_S+ROS_RO M248_S+ROS_SH LA1511_C_RO
## "ab" "de" "acg" "def"
test <- as.data.frame(stat.test$Letters)
test$group1 <- rownames(test)
test$group2 <- rownames(test)
colnames(test)[1] <- "Tukey"
test
test$info <- strsplit(test$group1, "_")
test$info[[1]][2]
## [1] "C"
test$info[[1]][3]
## [1] "SH"
test$Accession <- "none"
test$Condition <- "none"
test$Tissue<- "none"
test
for(i in 1:nrow(test)){
test$Accession[i] <- test$info[[i]][1]
test$Condition[i] <- test$info[[i]][2]
test$Tissue[i] <- test$info[[i]][3]
}
test2 <- test[,c(5:7,1)]
test2$group1 <- test2$Condition
test2$group2 <- test2$Condition
ICP
DW <- ggplot(data = ICP, mapping = aes(x = Condition, y = DW.mg, colour = Condition))
DW <- DW + geom_boxplot(alpha=0.2) + geom_jitter(width=0.1,alpha=0.2)
DW <- DW + facet_grid(Tissue~Accession , scales = "free_y")
DW <- DW + stat_summary(fun=mean, geom="point", shape=95, size=6, color="black", fill="black")
DW <- DW + scale_color_manual(values = c("blue", "plum", "rosybrown1", "red","hotpink","green"))
DW <- DW + ylab("Dry weight, mg") + xlab("")+stat_pvalue_manual(test2, label = "Tukey", y.position = 5)
DW <- DW + theme(axis.text.x = element_text(angle=90, hjust=0.9, vjust=0.5))
DW <- DW + rremove("legend")
DW
