Co-expression network analysis
Loranda_Calderon
2024-10-11
library(tidyverse)## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr 1.1.4 ✔ readr 2.1.5
## ✔ forcats 1.0.0 ✔ stringr 1.5.1
## ✔ ggplot2 3.5.1 ✔ tibble 3.2.1
## ✔ lubridate 1.9.3 ✔ tidyr 1.3.1
## ✔ purrr 1.0.2
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## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errorslibrary(WGCNA)## Loading required package: dynamicTreeCut
## Loading required package: fastcluster
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## Attaching package: 'fastcluster'
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## hclust
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## Attaching package: 'WGCNA'
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## corlibrary(conflicted)
options(stringsAsFactors = FALSE)HTAdata <- read.csv("/Users/lorandacalderonzamora/Respaldo/LORANDA/microarreglo/Conjuto de datos/Hipertensión/GSE24752/datExprHTA.csv")
dim(HTAdata)## [1] 13364 5names(HTAdata)## [1] "X" "GSM609525" "GSM609526" "GSM609529" "GSM609530"rownames(HTAdata) <- HTAdata$X
HTAdata <- HTAdata[, -1]
datExpr <- as.data.frame(t(HTAdata))dim(datExpr)## [1] 4 13364gsg = goodSamplesGenes(datExpr, verbose = 3);## Flagging genes and samples with too many missing values...
## ..step 1gsg$allOK## [1] TRUEsampleTree = hclust(dist(datExpr), method = "average");
sizeGrWindow(12,9)
par(cex = 0.6);
par(mar = c(0,4,2,0))
plot(sampleTree, main = "Sample clustering to detect outliers", sub="", xlab="", cex.lab = 1.5,
cex.axis = 1.5, cex.main = 2)traitData <- read.csv("/Users/lorandacalderonzamora/Respaldo/LORANDA/microarreglo/Conjuto de datos/Hipertensión/GSE24752/datMeta.csv")
dim(traitData )## [1] 4 4names(traitData )## [1] "geo_accession" "Disease" "Age" "Gender"sampleNames <- rownames(datExpr)
head(traitData$geo_accession)## [1] "GSM609525" "GSM609526" "GSM609529" "GSM609530"all(sampleNames %in% traitData$geo_accession)## [1] TRUEtraitRows <- match(sampleNames, traitData$geo_accession)
datTraits <- traitData[traitRows, ]
rownames(datTraits) <- datTraits$geo_accessiondatTraits[] <- lapply(datTraits, function(x) {
if (is.character(x) || is.factor(x)) {
as.numeric(as.factor(x))
} else {
x
}
})
datTraits_clean <- datTraits[, sapply(datTraits, is.numeric)]
str(datTraits_clean)## 'data.frame': 4 obs. of 4 variables:
## $ geo_accession: num 1 2 3 4
## $ Disease : num 2 2 1 1
## $ Age : int 47 49 54 38
## $ Gender : num 2 2 2 1sampleTree2 <- hclust(dist(datExpr), method = "average")
traitColors <- numbers2colors(datTraits_clean, signed = FALSE)
plotDendroAndColors(sampleTree2, traitColors,
groupLabels = names(datTraits_clean),
main = "Sample dendrogram and trait heatmap")
save(datExpr, datTraits_clean, file = "HTAdataInput.RData")lnames = load(file = "HTAdataInput.RData");
#The variable lnames contains the names of loaded variables.
lnames## [1] "datExpr" "datTraits_clean"# Filter the least variable genes (optional)
variance_genes <- apply(datExpr, 2, var)
datExpr_filtered <- datExpr[, variance_genes > quantile(variance_genes, 0.60)]# Select a narrower range of powers due to few samples
powers = c(1:6)
sft = pickSoftThreshold(datExpr_filtered, powerVector = powers, verbose = 5)## pickSoftThreshold: will use block size 5346.
## pickSoftThreshold: calculating connectivity for given powers...
## ..working on genes 1 through 5346 of 5346## Warning: executing %dopar% sequentially: no parallel backend registered## Power SFT.R.sq slope truncated.R.sq mean.k. median.k. max.k.
## 1 1 0.827 3.290 0.780 3440 3720 4100
## 2 2 0.779 1.620 0.728 2660 2940 3510
## 3 3 0.722 1.030 0.672 2200 2450 3130
## 4 4 0.632 0.720 0.589 1900 2100 2850
## 5 5 0.544 0.541 0.502 1670 1840 2620
## 6 6 0.449 0.412 0.404 1500 1630 2440sizeGrWindow(9, 5)
par(mfrow = c(1, 2))
cex1 = 0.9
plot(sft$fitIndices[,1], -sign(sft$fitIndices[,3]) * sft$fitIndices[,2],
xlab = "Soft Threshold (power)",
ylab = "Scale Free Topology Model Fit, signed R^2", type = "n",
main = "Scale independence")
text(sft$fitIndices[,1], -sign(sft$fitIndices[,3]) * sft$fitIndices[,2],
labels = powers, cex = cex1, col = "red")
abline(h = 0.80, col = "red") # Ajuste del umbral a 0.80
plot(sft$fitIndices[,1], sft$fitIndices[,5],
xlab = "Soft Threshold (power)",
ylab = "Mean Connectivity", type = "n",
main = "Mean connectivity")
text(sft$fitIndices[,1], sft$fitIndices[,5], labels = powers, cex = cex1, col = "red")net = blockwiseModules(
datExpr,
power = 6,
TOMType = "unsigned",
minModuleSize = 200,
reassignThreshold = 0,
mergeCutHeight = 0.20,
numericLabels = TRUE,
pamRespectsDendro = FALSE,
saveTOMs = TRUE,
saveTOMFileBase = "TOM_hypertension",
verbose = 3
)## Calculating module eigengenes block-wise from all genes
## Flagging genes and samples with too many missing values...
## ..step 1
## ....pre-clustering genes to determine blocks..
## Projective K-means:
## ..k-means clustering..
## ..merging smaller clusters...
## Block sizes:
## gBlocks
## 1 2 3
## 4910 4809 3645
## ..Working on block 1 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 1 into file TOM_hypertension-block.1.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..Working on block 2 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 2 into file TOM_hypertension-block.2.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..Working on block 3 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 3 into file TOM_hypertension-block.3.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..merging modules that are too close..
## mergeCloseModules: Merging modules whose distance is less than 0.2
## Calculating new MEs...sizeGrWindow(12, 9)
mergedColors = labels2colors(net$colors)
for (i in 1:length(net$dendrograms)) {
plotDendroAndColors(
net$dendrograms[[i]],
mergedColors[net$blockGenes[[i]]],
"Module colors",
dendroLabels = FALSE,
hang = 0.03,
addGuide = TRUE, guideHang = 0.05
)
}table(net$colors) # Gene counts per module##
## 1 2 3 4 5 6 7 8 9 10
## 3160 2104 1736 1583 1527 1344 600 505 456 349MEs = net$MEs # # Module Eigengene
moduleTraitCor = cor(MEs, datTraits_clean, use = "pairwise.complete.obs")
moduleTraitPvalue = corPvalueStudent(moduleTraitCor, nrow(datExpr))
print(moduleTraitCor) ## geo_accession Disease Age Gender
## ME2 -0.68174500 0.8089123 -0.36801856 0.07797247
## ME7 -0.26345610 0.6633301 -0.42976416 -0.11589845
## ME10 0.03965830 -0.3543036 0.85798597 0.55756882
## ME6 -0.79270060 0.4498438 0.75260766 0.87286763
## ME9 -0.57444862 0.4844641 0.90888817 0.93296891
## ME1 0.90780997 -0.8044265 -0.06781144 -0.46560754
## ME4 0.95586720 -0.9388965 -0.49492121 -0.82244089
## ME5 0.54685206 -0.7892057 -0.31059170 -0.53941019
## ME3 -0.49880685 0.1936109 -0.03743742 0.15256130
## ME8 0.01633654 -0.0994242 -0.68228900 -0.53048213print(moduleTraitPvalue) ## geo_accession Disease Age Gender
## ME2 0.31825500 0.19108768 0.63198144 0.92202753
## ME7 0.73654390 0.33666993 0.57023584 0.88410155
## ME10 0.96034170 0.64569644 0.14201403 0.44243118
## ME6 0.20729940 0.55015621 0.24739234 0.12713237
## ME9 0.42555138 0.51553586 0.09111183 0.06703109
## ME1 0.09219003 0.19557351 0.93218856 0.53439246
## ME4 0.04413280 0.06110352 0.50507879 0.17755911
## ME5 0.45314794 0.21079428 0.68940830 0.46058981
## ME3 0.50119315 0.80638906 0.96256258 0.84743870
## ME8 0.98366346 0.90057580 0.31771100 0.46951787# Extract the correlations and p-values for the trait "Disease"
cor_Disease = moduleTraitCor[, "Disease"]
pval_Disease = moduleTraitPvalue[, "Disease"]
best_module = which.max(abs(cor_Disease))
print(paste("Most significant module:", names(cor_Disease)[best_module]))## [1] "Most significant module: ME4"print(paste("Correlation:", cor_Disease[best_module]))## [1] "Correlation: -0.938896475880684"print(paste("P-value:", pval_Disease[best_module]))## [1] "P-value: 0.0611035241193159"module4_genes = names(datExpr)[net$colors == 4]
head(module4_genes)## [1] "ENSG00000000460" "ENSG00000000938" "ENSG00000001497" "ENSG00000002746"
## [5] "ENSG00000003436" "ENSG00000004059"str(module4_genes)## chr [1:1583] "ENSG00000000460" "ENSG00000000938" "ENSG00000001497" ...write.csv(module4_genes, "Module_Eigengene_ME4.csv", row.names = FALSE)# PPI network analysis
library(STRINGdb)
string_db <- STRINGdb$new(version = "11.5", species = 9606,
score_threshold = 400, input_directory = "")# Mapping Module 16 genes and visualizing Protein-Protein Interaction Network
module4_genes <- gsub("\\..*", "", module4_genes)
df_genes <- data.frame(ENSEMBL = module4_genes)
mapped_genes <- string_db$map(df_genes, "ENSEMBL", removeUnmappedRows = TRUE)## Warning: we couldn't map to STRING 16% of your identifiersprint(head(mapped_genes))## ENSEMBL STRING_id
## 1 ENSG00000000460 9606.ENSP00000286031
## 2 ENSG00000000938 9606.ENSP00000363117
## 3 ENSG00000001497 9606.ENSP00000363944
## 4 ENSG00000002746 9606.ENSP00000379228
## 5 ENSG00000003436 9606.ENSP00000233156
## 6 ENSG00000004059 9606.ENSP00000000233unmapped_genes <- setdiff(df_genes$ENSEMBL, mapped_genes$ENSEMBL)
print(unmapped_genes)## [1] "ENSG00000106133" "ENSG00000114374" "ENSG00000129816" "ENSG00000139239"
## [5] "ENSG00000142163" "ENSG00000180673" "ENSG00000181524" "ENSG00000183242"
## [9] "ENSG00000184895" "ENSG00000186076" "ENSG00000187621" "ENSG00000202503"
## [13] "ENSG00000203581" "ENSG00000206237" "ENSG00000206268" "ENSG00000207330"
## [17] "ENSG00000207547" "ENSG00000207571" "ENSG00000210191" "ENSG00000211592"
## [21] "ENSG00000211666" "ENSG00000211677" "ENSG00000211791" "ENSG00000211793"
## [25] "ENSG00000211815" "ENSG00000213071" "ENSG00000213178" "ENSG00000213261"
## [29] "ENSG00000213310" "ENSG00000213621" "ENSG00000213653" "ENSG00000213740"
## [33] "ENSG00000214182" "ENSG00000215151" "ENSG00000215492" "ENSG00000217404"
## [37] "ENSG00000218089" "ENSG00000219491" "ENSG00000219747" "ENSG00000219941"
## [41] "ENSG00000220541" "ENSG00000221669" "ENSG00000221930" "ENSG00000223654"
## [45] "ENSG00000223705" "ENSG00000224542" "ENSG00000224975" "ENSG00000225312"
## [49] "ENSG00000225465" "ENSG00000226049" "ENSG00000226188" "ENSG00000226525"
## [53] "ENSG00000226608" "ENSG00000226948" "ENSG00000227322" "ENSG00000227372"
## [57] "ENSG00000227725" "ENSG00000228218" "ENSG00000229040" "ENSG00000229132"
## [61] "ENSG00000229644" "ENSG00000229697" "ENSG00000229988" "ENSG00000230223"
## [65] "ENSG00000230311" "ENSG00000231074" "ENSG00000231292" "ENSG00000231369"
## [69] "ENSG00000231667" "ENSG00000232060" "ENSG00000232069" "ENSG00000232176"
## [73] "ENSG00000232267" "ENSG00000232289" "ENSG00000232460" "ENSG00000232541"
## [77] "ENSG00000232569" "ENSG00000232931" "ENSG00000232957" "ENSG00000233080"
## [81] "ENSG00000233314" "ENSG00000233494" "ENSG00000233545" "ENSG00000234009"
## [85] "ENSG00000234260" "ENSG00000235065" "ENSG00000235307" "ENSG00000235453"
## [89] "ENSG00000235552" "ENSG00000235725" "ENSG00000235824" "ENSG00000235844"
## [93] "ENSG00000235865" "ENSG00000236444" "ENSG00000236739" "ENSG00000236951"
## [97] "ENSG00000237434" "ENSG00000237825" "ENSG00000237887" "ENSG00000238018"
## [101] "ENSG00000238105" "ENSG00000239257" "ENSG00000242600" "ENSG00000242771"
## [105] "ENSG00000243612" "ENSG00000243910" "ENSG00000244535" "ENSG00000244682"
## [109] "ENSG00000247081" "ENSG00000248161" "ENSG00000249673" "ENSG00000250135"
## [113] "ENSG00000250591" "ENSG00000250868" "ENSG00000253755" "ENSG00000254126"
## [117] "ENSG00000254838" "ENSG00000258653" "ENSG00000258864" "ENSG00000259291"
## [121] "ENSG00000260306" "ENSG00000261514" "ENSG00000261884" "ENSG00000262943"
## [125] "ENSG00000263798" "ENSG00000264176" "ENSG00000264635" "ENSG00000265750"
## [129] "ENSG00000267659" "ENSG00000268173" "ENSG00000270008" "ENSG00000272916"
## [133] "ENSG00000273761" "ENSG00000274131" "ENSG00000274161" "ENSG00000274247"
## [137] "ENSG00000274287" "ENSG00000274338" "ENSG00000274726" "ENSG00000274779"
## [141] "ENSG00000275107" "ENSG00000275272" "ENSG00000275525" "ENSG00000275544"
## [145] "ENSG00000275624" "ENSG00000275650" "ENSG00000275708" "ENSG00000276155"
## [149] "ENSG00000276194" "ENSG00000276351" "ENSG00000276787" "ENSG00000276980"
## [153] "ENSG00000277069" "ENSG00000277134" "ENSG00000277377" "ENSG00000277401"
## [157] "ENSG00000277405" "ENSG00000278032" "ENSG00000278087" "ENSG00000278090"
## [161] "ENSG00000278548" "ENSG00000278574" "ENSG00000278644" "ENSG00000278834"
## [165] "ENSG00000278943" "ENSG00000279192" "ENSG00000279227" "ENSG00000279353"
## [169] "ENSG00000279730" "ENSG00000279738" "ENSG00000279739" "ENSG00000280351"
## [173] "ENSG00000280627" "ENSG00000280831" "ENSG00000280908" "ENSG00000281380"
## [177] "ENSG00000281459" "ENSG00000281877" "ENSG00000282025" "ENSG00000282176"
## [181] "ENSG00000282394" "ENSG00000282402" "ENSG00000282657" "ENSG00000282663"
## [185] "ENSG00000282712" "ENSG00000282817" "ENSG00000282853" "ENSG00000282954"
## [189] "ENSG00000283018" "ENSG00000283153" "ENSG00000283847" "ENSG00000283887"
## [193] "ENSG00000283934" "ENSG00000284009" "ENSG00000284140" "ENSG00000284292"
## [197] "ENSG00000284595" "ENSG00000284859" "ENSG00000284868" "ENSG00000284944"
## [201] "ENSG00000284967" "ENSG00000284980" "ENSG00000285049" "ENSG00000285112"
## [205] "ENSG00000285136" "ENSG00000285238" "ENSG00000285410" "ENSG00000285426"
## [209] "ENSG00000285502" "ENSG00000285625" "ENSG00000285851" "ENSG00000286190"
## [213] "ENSG00000286214" "ENSG00000287543" "ENSG00000288169" "ENSG00000288198"
## [217] "ENSG00000288299" "ENSG00000288453" "ENSG00000288542" "ENSG00000288637"
## [221] "ENSG00000288698" "ENSG00000290315" "ENSG00000291153" "ENSG00000291237"
## [225] "ENSG00000291362" "ENSG00000291380" "ENSG00000291420" "ENSG00000291480"
## [229] "ENSG00000291507" "ENSG00000291583" "ENSG00000291629" "ENSG00000291631"
## [233] "ENSG00000291650" "ENSG00000291652" "ENSG00000291654" "ENSG00000291679"
## [237] "ENSG00000291692" "ENSG00000291917" "ENSG00000291951" "ENSG00000291964"
## [241] "ENSG00000291971" "ENSG00000291975" "ENSG00000292029" "ENSG00000292053"
## [245] "ENSG00000292130" "ENSG00000292210" "ENSG00000292226" "ENSG00000292253"
## [249] "ENSG00000292336" "ENSG00000292344" "ENSG00000292354" "ENSG00000293057"
## [253] "ENSG00000301761" "ENSG00000304028" "ENSG00000304822" "ENSG00000307722"
## [257] "ENSG00000309028" "ENSG00000310469" "ENSG00000310521"string_db$plot_network(mapped_genes$STRING_id)
library(org.Hs.eg.db)## Loading required package: AnnotationDbi## Loading required package: stats4## Loading required package: BiocGenerics##
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## select## # Functional enrichment analysis
enrichment_results_GO <- string_db$get_enrichment(
string_ids = mapped_genes$STRING_id,
category = "Process", # GO "Process" or "Pathway" by KEGG
methodMT = "fdr",
iea = FALSE
)## Warning in string_db$get_enrichment(string_ids = mapped_genes$STRING_id, :
## methodMT parameter is depecated. Only FDR correction is available.## Warning in string_db$get_enrichment(string_ids = mapped_genes$STRING_id, : iea
## parameter is deprecated.head(enrichment_results_GO)## category term number_of_genes number_of_genes_in_background
## 52 Process GO:0009987 1164 15024
## 53 Process GO:0050896 695 8046
## 54 Process GO:0002376 267 2481
## 55 Process GO:0051716 573 6489
## 56 Process GO:0070887 302 2919
## 57 Process GO:0051179 504 5591
## ncbiTaxonId
## 52 9606
## 53 9606
## 54 9606
## 55 9606
## 56 9606
## 57 9606
## inputGenes
## 52 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## 54 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## 55 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## preferredNames
## 52 ARF5,PDK4,SKAP2,RTFDC1,YIPF1,CD22,AQR,DERL2,KIF22,TMEM161A,TNFRSF1A,FSTL3,TNS1,STK10,MRPS34,CPB2,CDK13,PILRA,AQP2,RBM22,PPP1R13B,XYLB,PSMD8,SNAP29,MMP11,MYH9,ACO2,SOS2,PYGL,MTHFD1,BDKRB1,PABPN1,EFS,CINP,CYP24A1,GSS,MYL12A,PQBP1,C16orf70,CORO1A,MMP15,PSMD7,FA2H,PDIA2,CDIPT,AQP9,OIP5,TG,SFRP1,DCTN6,PAF1,HNRNPL,FCGRT,SGTA,LGALS13,POLR2I,RAB3D,CPA2,OGDH,STX1A,SERPINE1,GCK,C8G,BLNK,ST6GALNAC2,P2RX5,SYNGR2,ASIC2,COL1A1,IBSP,MANBA,APOC3,LTA4H,PARP11,ARHGDIB,IL26,APOBEC1,TULP1,GPR63,ACOT13,TTC1,CRBN,TFPI,SLC30A3,PCGF1,REG1A,NEU2,SLC9A2,PLEK,SPR,ENO1,RGS2,SELL,TTR,FKBP15,AFTPH,TNN,CCDC53,PLBD1,GJA3,TNFSF10,RAMP3,FTSJ2,CLTA,AKR1D1,SRGN,PTGIS,OR2B6,SOX9,CLPP,C3,MKKS,SNRPB2,CCR7,ARL2,TAS2R3,KLF2,TUBA4A,STYXL1,MCHR1,RAC2,MBD4,MYOD1,TPH1,FAM64A,ARHGEF6,CHRNA10,GRHL2,CUL9,FAM155B,GADD45G,BST2,PGLS,BMP15,NDUFA10,PRDM12,SLC6A8,EMR3,SCLY,UTP3,H3F3B,GUCY2D,BRD8,TERF2,APCS,AP3B1,HRASLS2,PI4KA,MICAL2,DUSP26,SYNJ2BP,ELP3,CD180,FST,CCNH,DOCK2,EMP1,DSC1,PDGFRA,CARS2,HILPDA,ORC3,NAT10,SMPD2,EMX1,MDM2,MPHOSPH6,EIF4E2,PLXNC1,MARCH7,IL36G,IL1RN,TUBB2B,GTF2H4,HTR3B,SQRDL,ITPKA,PREB,GPR87,ASNSD1,METTL5,GUCY2C,PSMC1,CASQ2,TRAF5,USP22,SNW1,RNF138,TTC19,RIMBP2,C14orf166,PSMD11,ERP29,CHRNB4,FAT2,SNX1,RAB11A,FLT4,MARS,MMD,WDR59,SMAD2,SCPEP1,PKMYT1,DHX8,FOXF1,PITPNM3,SRCAP,CHCHD3,ZC3H3,CCNE1,ACIN1,CDH20,ELL,UCP1,ASPA,RAB36,CAPZA1,LY9,APLP2,MTIF2,DNAJC8,ZNF106,KIF1B,COQ10B,FARP2,DARS,CUL3,GUCY1B3,RAPGEF2,IFT57,RAB17,ASB1,KCNH4,SLC2A9,ANXA3,SDHA,GALNT7,BST1,MAP3K13,CDH6,VCAN,MSH3,LEF1,ABCB6,PITX1,SEMA3C,TNPO3,STAP1,TFEC,NRXN2,B3GAT3,EXOSC7,MCCC1,ANK1,EIF4H,RNF141,TIMP3,SLC5A1,CD27,LUM,ASCL1,BIN2,ITGB7,CSAD,PXN,RAB15,TSPAN3,IGF1R,RHCG,IQGAP1,IRF8,GID4,SLC39A6,DNMT3L,BCAM,TIMM44,WRAP73,SFT2D2,SETDB1,LEFTY1,GDF7,RPS27A,RALB,SLC4A3,STAC,ARL6IP5,LRTM1,EAF2,PELO,ARHGAP26,GABRB2,PCYOX1L,KCNMB1,EGFR,NONO,HTR2C,BIN3,DPYS,SLC43A1,NPAT,NINL,MS4A2,PIGT,CCT5,NGLY1,CDC123,KHDRBS2,GUF1,PABPC3,NVL,KANSL1L,GRIA4,NUBP1,HNRNPU,CD96,TRAPPC8,GPR15,TRIM11,C21orf91,XPC,ACAA2,LONP2,CYP2C18,PDE11A,MED7,TMBIM4,AIFM1,ZFYVE9,SLC6A1,HPD,HMHB1,SLAMF8,HTR6,C21orf59,IFNGR2,KCNE2,PIP,PSKH1,PTGIR,ETHE1,FLAD1,DBN1,NCKAP1L,AQP5,UBXN1,LAPTM5,NCSTN,NEUROD1,TGFA,COL6A3,ARPC2,IHH,ITGB5,OSBPL11,RPN1,HMGB2,F2RL1,SPINK1,TLX3,T,MELK,NEMF,METTL3,GAS1,NELL1,AVPR1A,RAG1,SLC9A5,NAB2,NOD2,GCN1L1,CA4,TUBA1A,TUBA1C,SPINT2,LY6D,CD320,EVPL,ECI1,PNOC,ACSM1,ECEL1,MGMT,LSM3,LDHAL6B,UBTF,GUSB,IL16,N6AMT1,STARD5,CD14,GNB2,PRKCB,SIRPG,LETM1,NMUR1,PGK2,ITPR1,SPRR1B,MRPL13,AHSP,BPTF,MRC2,NINJ2,ZBTB5,KCNS1,MT1E,HTR1E,FBXO22,EEF2,ATP6V0A4,WDR3,KRT17,DCAKD,F2,RPL15,PSMD1,KLF7,PSMD2,HSPA6,P2RY2,LMAN1L,PSMC5,ABCD2,MAPK7,GSTM1,PTPN2,PCDHGC3,ADPGK,EHBP1L1,MID1,USP39,HNRNPD,GFRA4,PFAS,ATP10B,SSNA1,OAZ3,KLHDC3,GPR88,ALOXE3,ANGPT2,MRPS31,USP9X,DLGAP1,LEPREL1,LIMCH1,SNRNP200,PLXND1,CPNE1,TNIP1,ROCK2,MC5R,OS9,MPI,GCFC2,BID,SF3B2,SUPT6H,CXCR2,PCK1,EMR2,C8orf4,TRIP10,HCLS1,P2RY13,ASB8,PITPNB,TACC1,PTH1R,PGA3,SOX11,ACPP,SIGLEC7,UBE2O,CRTAP,DDX54,A2M,ZNF771,SMARCE1,HSPA5,WRAP53,APOLD1,SAV1,KARS,CARM1,THOC6,CUL1,NCBP2,CLIP4,ATP13A2,BMP8A,TRIM49,RLIM,DGKA,RBM10,HAX1,KRT7,DRG1,LEPR,IL1R2,IP6K2,CD8B,GAST,CALCA,SPAG16,MFSD10,PTGDR2,GPR97,UBA7,MRPL40,MAGEA2B,MX2,SHMT2,MAPK11,HAP1,GNAL,CACNA1H,TCFL5,FOXE3,FSCN2,ERCC6L,MT1F,HSP90AA1,DLST,CBX3,RAD51C,HIP1,FIP1L1,TUBA1B,CENPA,CXCL14,FBXO40,EBAG9,IL21R,DNAJB2,ZBTB16,MTDH,CRISP1,UBE2G2,UBA1,AP3S2,STARD13,ZC3H15,BRIX1,RASGRP2,ZFP91,RPS7,SRR,RHOG,NT5C2,CIR1,KAT5,TCF7,ACVR2B,GANAB,SGK2,GYG1,P4HTM,SEPT6,ENSA,BTNL3,HNRNPA1,CAV3,BTNL8,SNRPD2,PTGES,ADCY2,FOXN3,TNFSF13,ABCA2,MBTPS1,ZMAT5,FGD6,QPCT,FBXL5,MYO1F,HMGB1,E2F1,VAPA,GATA2,PFKM,FZD9,ANXA2,PLEKHB1,ANXA6,HNRNPA2B1,NRD1,NAT6,NEIL1,ITSN2,SORBS2,RET,FAS,KHDRBS3,AMPH,TNFRSF10C,BICD2,IGF2R,ICK,BMX,MCTP2,GOLGA7,PHF8,RAD23B,GMFB,PAX5,HSD17B11,RHOT1,TRIM33,PLXNB1,ARNT,NAALADL1,SYN3,MAP3K5,MYOF,XRCC6,TECPR2,ATP6V1H,AP4M1,PGLYRP4,FAM3C,ETS2,MAP4,CASS4,COL4A2,ITGB1BP1,ZNF148,CPZ,NMRK1,C8A,CYB5R3,ZEB1,TOP1,MRPL24,CD3E,TAF11,MAST2,IPO9,MAP3K3,TLR1,DCLRE1A,PAX9,SOX15,CHML,FH,MTR,TSNAX,ADCK3,LEFTY2,ENAH,MARC2,ESRRG,SLC22A2,EZR,NUCKS1,LRRN2,KDM5B,GPR37L1,BRINP3,NCF2,F5,NME7,ADCY10,ATF6,NDUFS2,CD244,PEX19,CADM3,AIM2,ETV3,NES,EFNA1,ECHS1,S100A13,SNX27,BUB3,DMBT1,MLLT11,CDC40,QRSL1,VPS45,SV2A,FCGR1A,NDUFAF4,HMGCS2,CD58,DKC1,EPS8L3,ELOVL4,GNAI3,GBF1,VAV3,COL11A1,POLL,BTRC,ABCA4,BCAR3,NSDHL,RPL5,GBP2,SLC25A28,SOX3,LMO4,DNASE2B,CTH,PPP1R3D,WDR78,ITGB3BP,STX16,MCTS1,NOC3L,RNF113A,SUPT3H,RBP4,NDOR1,ECHDC2,RAB3B,KIF20B,LHX3,CYP4A22,IRS4,PPCS,HIVEP3,TBC1D13,SET,ZMPSTE24,CAP1,TOMM34,BMP8B,OSER1,UTP11L,GNL2,MRPS15,MAP7D1,GLO1,HDAC1,MEGF9,STX12,FGR,ATP6V1G1,NFS1,TMEM57,GDF5,BAK1,EDEM2,IGBP1,RPL11,TMEM38B,LAS1L,ALPL,COL15A1,MAGED2,PLA2G2D,OTUD3,ATF6B,ZAK,UBR4,UPF3A,FBP2,KDM5C,SDHB,CROCC,MAPRE1,F7,LSM2,VARS,KIF3B,DIRAS2,ING1,DDAH2,AGMAT,SLC28A3,DHX16,NPPB,SLC15A1,MSRB2,SPAG6,RORB,CNNM4,UIMC1,CTNNBIP1,HRH2,ATXN2,TBC1D4,TNFRSF25,CKAP2,LIG3,ATAD3A,BMP2,GALT,NUDT2,DNAJC15,XDH,NFX1,FOXO1,POSTN,GPR64,PHKA2,RHOBTB3,GDI2,TUBB2A,RPS6,VPS16,TLR7,PDE4A,AKR1C2,POMP,IDH3B,FOXC1,EIF3CL,DUT,SDC1,ITSN1,THUMPD1,IDI1,CCP110,SIRPB1,ATP8A2,CPPED1,TMPRSS6,RBM47,GART,GPNMB,FGFBP1,FBXL18,KCNA1,MSX1,URB1,CSPG5,SEC13,SRGAP3,KRT18,KCNQ3,CFAP69,HCAR2,TSSK1B,ALPP,TTLL4,XRCC5,GRB2,CD79B,MLF1,DBH,STEAP3,PICALM,PRCP,CBX1,PLXNA1,FAM50A,GOLGB1,GAP43,PPP6R3,FABP6,HELLS,CACNB1,LIPF,UTP14A,PCDHGA2,CCDC109B,ACYP2,ZNF207,AIMP1,GPR75,PRKCD,GIT1,SLC11A2,FLOT2,DAAM1,ALDOA,SEC31A,QPRT,PAQR5,MFAP4,RABL2B,CXCL12,COA1,HECW1,YWHAZ,GTF2A2,GCNT3,LDHB,UMOD,RAB27A,NAGA,AMPD3,CD72,KAT6A,MOCS2,NCF4,MPST,CD151,EIF4ENIF1,CHMP7,PPP3CC,POLR3D,TTC28,ZMYND11,SLC35E3,KHSRP,CBSL,ENSP00000381234,PAX1,TMPRSS2,PCDHGA8,SHARPIN,UBE2D2,DAAM2,KSR1,SEPT7,CLDN14,ROCK1,RPGRIP1,SIRPA,USP25,SFI1,PCBP3,RDX,RASGRP3,WDR43,MYH8,APOBEC3A,CDK11A,CBX6,CYP4F11,WDR62,CHRNA2,TCL1A,NCOA1,CLDN15,RPAIN,FOXO3,SETD5,BUD31,MYH6,CPE,ALAD,IL1R1,NIF3L1,TBC1D10B,CD8A,ARHGAP25,UAP1L1,CPVL,NFU1,LAMB2,RARG,CASP4,CHEK1,UBAP2L,TLR6,DSN1,TKT,AGR2,CYLD,LDB1,HTATIP2,MYO1A,GCA,SNX10,SLC12A4,MYT1L,IK,SCN4A,FTSJ3,KIAA0226L,ENDOU,CALCOCO2,PHF21A,HLA-DMB,SATB1,PLAC8,HMGA1,SLC25A13,FOXA2,CAPZB,RANGAP1,SIGLEC6,PAN2,TNRC6B,SEPT4,PVR,HK1,GRB7,ARRB2,PPP1R13L,SMC6,CKMT2,CA10,PBX1,TMED7,IFT140,DNAJC7,EBNA1BP2,VWA9,PRKCA,CLDN4,ARRB1,LTB,LSM5,ERLIN1,NBR1,PTPRC,ALDH3A1,DEPDC1,BDNF,RPS24,ABHD4,PIGG,INTS12,POLR2H,TGFBI,SPATA2,KIAA1751,SUPT20H,MRPS22,RARRES2,PVRL3,CACNA2D2,MME,SMYD3,SUCLG2,SLC4A2,EIF1,LYRM4,ZMYND8,PDE6B,THOC5,TFAM,ACSL1,STIMATE-MUSTN1,FBXL7,SMUG1,DROSHA,TRPC7,RNASET2,GNB2L1,MRPS27,LYN,EIF3H,MCF2,IKBKB,GSTK1,PCDHGA1,CD3G,HSPA8,KDM2A,BBIP1,B3GAT1,PUF60,FAM111A,ATP6V0B,TOR1AIP1,GRIK4,ECHDC1,ADM,KMT2A,SFSWAP,C12orf43,CD19,IST1,H2AFJ,ACADVL,SMG8,TDRD3,VNN3,TLR5,KIAA0391,GPR161,ZNF135,UBC,CCR3,DYRK4,PHB2,DAG1,SLCO1C1,CYFIP2,HCK,CPSF3L,SLC2A14,VDR,MGAM,LIN7A,CD63,CEP290,NACA,CLEC5A,C14orf79,UBE2J1,MAP3K9,NUMB,SRP54,TNFAIP2,PSTPIP1,GPR176,ASIP,SLC7A6,OBSCN,PHKG2,PECAM1,DNAH2,NUP88,CLUH,TRPV1,PCDHGA9,TOM1L1,VR1,RAB31,CDH8,PITPNC1,DDX42,STX10,S1PR2,TRMT1,MUM1,PLEKHH3,TNFSF14,PAK4,NOSIP,FPR1,H6PD,RER1,FKBP8,GRIN2B,ELOVL1,MARCKS,TCEB1,POLR2E,NLRP1,CNTNAP3B,ADRM1,RPP38,BORA,HIST1H4D,KIZ,CLTC,SEPT2,EPHX1,MTERF4,TCHH,CYP3A7,ADRA2B,SLC6A6,PRODH,FOXD1,IP6K1,LRP5L,PLCG2,NR2E3,HMGN3,PCSK6,MILR1,FAM65B,ELK1,RBM26,NSA2,CABYR,NPRL3,PRIM2,SMTN,ENSP00000485022,OR2S2,CDHR1
## 53 PDK4,SKAP2,RTFDC1,AQR,DERL2,KIF22,TMEM161A,TNFRSF1A,FSTL3,STK10,CPB2,CDK13,PILRA,AQP2,RBM22,PPP1R13B,PSMD8,SNAP29,MYH9,ACO2,SOS2,PYGL,BDKRB1,PABPN1,EFS,CINP,CYP24A1,GSS,MYL12A,PQBP1,CORO1A,MMP15,PSMD7,PDIA2,AQP9,TG,SFRP1,PAF1,HNRNPL,SGTA,POLR2I,RAB3D,STX1A,SERPINE1,GCK,C8G,BLNK,P2RX5,ASIC2,COL1A1,IBSP,MANBA,APOC3,LTA4H,ARHGDIB,IL26,APOBEC1,TULP1,GPR63,TFPI,SLC30A3,REG1A,PLEK,ENO1,RGS2,SELL,TTR,TNFSF10,RAMP3,SRGN,PTGIS,OR2B6,SOX9,C3,MKKS,CCR7,TAS2R3,KLF2,STYXL1,MCHR1,RAC2,MBD4,MYOD1,TPH1,ARHGEF6,CHRNA10,BST2,BMP15,PRDM12,EMR3,H3F3B,GUCY2D,BRD8,TERF2,APCS,AP3B1,PI4KA,SYNJ2BP,CD180,FST,CCNH,DOCK2,DSC1,PDGFRA,HILPDA,SMPD2,EMX1,MDM2,PLXNC1,IL36G,IL1RN,GTF2H4,HTR3B,ITPKA,PREB,GPR87,GUCY2C,PSMC1,CASQ2,TRAF5,SNW1,RNF138,PSMD11,CHRNB4,RAB11A,FLT4,MARS,WDR59,SMAD2,FOXF1,CCNE1,UCP1,RAB36,CAPZA1,LY9,APLP2,ZNF106,KIF1B,FARP2,CUL3,GUCY1B3,RAPGEF2,IFT57,RAB17,ASB1,ANXA3,BST1,MAP3K13,CDH6,MSH3,LEF1,SEMA3C,STAP1,TFEC,NRXN2,ANK1,TIMP3,SLC5A1,CD27,LUM,ASCL1,BIN2,ITGB7,PXN,RAB15,IGF1R,IQGAP1,IRF8,BCAM,SETDB1,LEFTY1,GDF7,RPS27A,RALB,STAC,ARL6IP5,LRTM1,ARHGAP26,GABRB2,KCNMB1,EGFR,NONO,HTR2C,MS4A2,CCT5,GRIA4,HNRNPU,CD96,GPR15,TRIM11,XPC,ACAA2,LONP2,CYP2C18,PDE11A,AIFM1,ZFYVE9,SLC6A1,HMHB1,SLAMF8,HTR6,IFNGR2,KCNE2,PIP,PTGIR,NCKAP1L,AQP5,LAPTM5,NCSTN,NEUROD1,TGFA,ARPC2,IHH,ITGB5,HMGB2,F2RL1,T,MELK,METTL3,GAS1,AVPR1A,RAG1,NOD2,GCN1L1,SPINT2,LY6D,CD320,EVPL,PNOC,ACSM1,ECEL1,MGMT,GUSB,IL16,N6AMT1,CD14,GNB2,PRKCB,SIRPG,NMUR1,ITPR1,ZBTB5,MT1E,HTR1E,FBXO22,EEF2,ATP6V0A4,F2,PSMD1,KLF7,HSPB7,PSMD2,HSPA6,P2RY2,PSMC5,MAPK7,GSTM1,PTPN2,MID1,HNRNPD,GFRA4,PFAS,SSNA1,KLHDC3,GPR88,ALOXE3,ANGPT2,USP9X,PLXND1,CPNE1,TNIP1,ROCK2,MC5R,OS9,BID,CXCR2,PCK1,EMR2,C8orf4,TRIP10,HCLS1,P2RY13,ASB8,PTH1R,SOX11,ACPP,DDX54,A2M,ZNF771,HSPA5,WRAP53,APOLD1,SAV1,KARS,CARM1,CUL1,NCBP2,ATP13A2,BMP8A,DGKA,HAX1,LEPR,IL1R2,IP6K2,CD8B,GAST,CALCA,PTGDR2,GPR97,MAGEA2B,MX2,SHMT2,MAPK11,HAP1,GNAL,CACNA1H,MT1F,HSP90AA1,CBX3,RAD51C,HIP1,TUBA1B,CXCL14,IL21R,DNAJB2,MTDH,UBE2G2,UBA1,STARD13,ZC3H15,RASGRP2,ZFP91,SRR,RHOG,KAT5,TCF7,ACVR2B,SGK2,GYG1,ENSA,BTNL3,HNRNPA1,CAV3,BTNL8,PTGES,ADCY2,FOXN3,TNFSF13,ABCA2,MBTPS1,QPCT,HMGB1,E2F1,VAPA,GATA2,FZD9,ANXA2,PLEKHB1,ANXA6,HNRNPA2B1,NEIL1,SORBS2,RET,FAS,TNFRSF10C,IGF2R,ICK,BMX,MCTP2,GOLGA7,RAD23B,GMFB,PAX5,RHOT1,PLXNB1,ARNT,MAP3K5,MYOF,XRCC6,ATP6V1H,PGLYRP4,FAM3C,CASS4,COL4A2,ITGB1BP1,ZNF148,CPZ,C8A,CYB5R3,ZEB1,TOP1,CD3E,MAST2,MAP3K3,TLR1,DCLRE1A,PAX9,CHML,FH,MTR,LEFTY2,ENAH,MARC2,ESRRG,SLC22A2,EZR,FAIM3,NUCKS1,LRRN2,KDM5B,GPR37L1,BRINP3,NCF2,F5,ADCY10,ATF6,NDUFS2,CD244,AIM2,ETV3,EFNA1,S100A13,SNX27,DMBT1,MLLT11,VPS45,FCGR1A,CD58,EPS8L3,ELOVL4,GNAI3,GBF1,VAV3,COL11A1,POLL,BTRC,ABCA4,BCAR3,NSDHL,GBP2,CTH,ITGB3BP,MCTS1,RNF113A,RBP4,NDOR1,RAB3B,LHX3,IFIT5,IRS4,WFDC2,ZMPSTE24,CAP1,BMP8B,OSER1,HDAC1,FGR,ATP6V1G1,TMEM57,GDF5,BAK1,EDEM2,IGBP1,TMEM38B,ALPL,COL15A1,PLA2G2D,ATF6B,ZAK,UBR4,F7,DIRAS2,DDAH2,NPPB,MSRB2,RORB,CNNM4,UIMC1,CTNNBIP1,HRH2,TBC1D4,TNFRSF25,LIG3,BMP2,NUDT2,DNAJC15,NFX1,FOXO1,POSTN,GPR64,LY86,RHOBTB3,GDI2,RPS6,TLR7,PDE4A,AKR1C2,FOXC1,SDC1,ITSN1,SIRPB1,ATP8A2,CPPED1,GART,GPNMB,FGFBP1,KCNA1,MSX1,CSPG5,SRGAP3,KRT18,CFAP69,HCAR2,TSSK1B,SP140,XRCC5,GRB2,CD79B,DBH,POU2AF1,PRCP,CBX1,PLXNA1,GAP43,CACNB1,AIMP1,GPR75,PRKCD,GIT1,SLC11A2,DAAM1,ALDOA,SEC31A,MFAP4,RABL2B,CXCL12,YWHAZ,GCNT3,UMOD,RAB27A,AMPD3,KAT6A,NCF4,MPST,CD151,PPP3CC,POLR3D,ZMYND11,KHSRP,CBSL,ENSP00000381234,SHARPIN,UBE2D2,DAAM2,KSR1,ROCK1,RPGRIP1,SIRPA,ZG16,RDX,RASGRP3,APOBEC3A,CYP4F11,F11,CHRNA2,TCL1A,NCOA1,RPAIN,FOXO3,MYH6,CPE,ALAD,IL1R1,CD8A,ARHGAP25,LAMB2,RARG,CASP4,CHEK1,TLR6,DSN1,CYLD,GCA,SNX10,ENDOU,CALCOCO2,PHF21A,HLA-DMB,SATB1,PLAC8,HMGA1,SLC25A13,FOXA2,CAPZB,RANGAP1,TNRC6B,HK1,GRB7,ARRB2,SMC6,PBX1,PRKCA,CLDN4,ARRB1,LTB,LSM5,ERLIN1,PTPRC,ALDH3A1,DEPDC1,BDNF,POLR2H,TGFBI,RARRES2,MME,SMYD3,PDE6B,CST7,ACSL1,STIMATE-MUSTN1,SMUG1,DROSHA,TRPC7,RNASET2,GNB2L1,LYN,MCF2,IKBKB,GSTK1,CD3G,HSPA8,KDM2A,B3GAT1,FAM111A,ATP6V0B,GRIK4,ADM,C12orf43,CD19,IST1,ACADVL,TLR5,GPR161,UBC,CCR3,PHB2,DAG1,CYFIP2,HCK,VDR,MGAM,CD63,CEP290,CLEC5A,UBE2J1,MAP3K9,SRP54,PSTPIP1,GPR176,ASIP,OBSCN,PECAM1,TRPV1,TOM1L1,VR1,RAB31,CDH8,PITPNC1,S1PR2,MUM1,PLEKHH3,TNFSF14,PAK4,FPR1,FKBP8,GRIN2B,TCEB1,POLR2E,NLRP1,HIST1H4D,CLTC,SEPT2,EPHX1,CYP3A7,ADRA2B,PRODH,FOXD1,LRP5L,PLCG2,NR2E3,MILR1,FAM65B,ELK1,NPRL3,OR2S2
## 54 SKAP2,CD22,KIF22,FSTL3,STK10,CDK13,PSMD8,SNAP29,MYH9,PYGL,PQBP1,CORO1A,PSMD7,SFRP1,DCTN6,FCGRT,RAB3D,C8G,BLNK,COL1A1,MANBA,LTA4H,APOBEC1,REG1A,PLEK,SELL,TTR,TNFSF10,CLTA,C3,CCR7,KLF2,BST2,EMR3,APCS,AP3B1,CD180,FST,DOCK2,DSC1,PDGFRA,IL36G,IL1RN,PSMC1,PSMD11,CHRNB4,ACIN1,CAPZA1,LY9,FARP2,RAB17,ANXA3,BST1,MSH3,LEF1,SEMA3C,CD27,BIN2,ITGB7,IGF1R,IQGAP1,IRF8,NONO,MS4A2,CD96,GPR15,TRIM11,HMHB1,SLAMF8,IFNGR2,NCKAP1L,NCSTN,ARPC2,ITGB5,HMGB2,F2RL1,MELK,METTL3,RAG1,NOD2,LY6D,CD320,GUSB,IL16,CD14,PRKCB,SIRPG,AHSP,EEF2,F2,PSMD1,PSMD2,HSPA6,PSMC5,PTPN2,MID1,ANGPT2,CPNE1,CXCR2,EMR2,C8orf4,HCLS1,ACPP,KARS,CUL1,LEPR,IL1R2,IP6K2,CD8B,CALCA,PTGDR2,GPR97,MX2,SHMT2,HSP90AA1,CXCL14,IL21R,ZBTB16,RHOG,TCF7,GYG1,BTNL3,BTNL8,TNFSF13,QPCT,HMGB1,VAPA,GATA2,FZD9,ANXA2,RET,FAS,IGF2R,GOLGA7,PAX5,MAP3K5,XRCC6,PGLYRP4,C8A,CYB5R3,CD3E,TLR1,FAIM3,NCF2,CD244,AIM2,S100A13,SNX27,DMBT1,FCGR1A,CD58,GBF1,VAV3,POLL,BTRC,GBP2,LMO4,WDR78,RAB3B,IFIT5,WFDC2,ZMPSTE24,CAP1,GLO1,FGR,BAK1,IGBP1,PLA2G2D,UBR4,KIF3B,NPPB,HRH2,LY86,GDI2,TLR7,SDC1,SIRPB1,CPPED1,RBM47,SEC13,HCAR2,XRCC5,GRB2,CD79B,MLF1,DBH,POU2AF1,PICALM,PRCP,HELLS,AIMP1,PRKCD,SLC11A2,ALDOA,SEC31A,CXCL12,GCNT3,UMOD,RAB27A,AMPD3,KAT6A,NCF4,CD151,POLR3D,ZMYND11,PAX1,ROCK1,SIRPA,APOBEC3A,ALAD,IL1R1,CD8A,CASP4,TLR6,DSN1,CYLD,GCA,SNX10,ENDOU,CALCOCO2,HLA-DMB,SATB1,PLAC8,CAPZB,HK1,GRB7,PBX1,LTB,PTPRC,RPS24,RARRES2,MME,THOC5,CST7,RNASET2,LYN,IKBKB,CD3G,HSPA8,FAM111A,ADM,KMT2A,CD19,IST1,TLR5,CCR3,PHB2,CYFIP2,HCK,MGAM,CD63,CEP290,CLEC5A,SRP54,PSTPIP1,SLC7A6,PECAM1,TRPV1,VR1,RAB31,TNFSF14,FPR1,NLRP1,CLTC,LRP5L,PLCG2,MILR1
## 55 PDK4,SKAP2,RTFDC1,AQR,DERL2,KIF22,TMEM161A,TNFRSF1A,FSTL3,STK10,CPB2,PILRA,AQP2,RBM22,PPP1R13B,PSMD8,MYH9,SOS2,BDKRB1,PABPN1,EFS,CINP,CYP24A1,PQBP1,CORO1A,PSMD7,PDIA2,AQP9,TG,SFRP1,PAF1,HNRNPL,SGTA,POLR2I,RAB3D,STX1A,SERPINE1,GCK,BLNK,P2RX5,ASIC2,COL1A1,IBSP,APOC3,ARHGDIB,IL26,APOBEC1,GPR63,TFPI,REG1A,PLEK,RGS2,TTR,TNFSF10,RAMP3,SRGN,PTGIS,OR2B6,SOX9,C3,MKKS,CCR7,TAS2R3,KLF2,STYXL1,MCHR1,RAC2,MBD4,MYOD1,ARHGEF6,CHRNA10,BST2,BMP15,EMR3,GUCY2D,BRD8,TERF2,PI4KA,SYNJ2BP,CD180,FST,CCNH,DOCK2,PDGFRA,HILPDA,SMPD2,MDM2,PLXNC1,IL36G,IL1RN,GTF2H4,HTR3B,ITPKA,PREB,GPR87,GUCY2C,PSMC1,CASQ2,TRAF5,SNW1,RNF138,PSMD11,CHRNB4,RAB11A,FLT4,MARS,WDR59,SMAD2,FOXF1,CCNE1,UCP1,RAB36,CAPZA1,APLP2,ZNF106,KIF1B,FARP2,CUL3,GUCY1B3,RAPGEF2,IFT57,RAB17,ASB1,BST1,MAP3K13,CDH6,MSH3,LEF1,SEMA3C,STAP1,TFEC,NRXN2,ANK1,TIMP3,CD27,ASCL1,BIN2,ITGB7,PXN,RAB15,IGF1R,IQGAP1,IRF8,BCAM,SETDB1,LEFTY1,GDF7,RPS27A,RALB,STAC,ARL6IP5,ARHGAP26,GABRB2,KCNMB1,EGFR,NONO,HTR2C,MS4A2,GRIA4,HNRNPU,GPR15,XPC,ACAA2,CYP2C18,PDE11A,AIFM1,ZFYVE9,HMHB1,SLAMF8,HTR6,IFNGR2,KCNE2,PTGIR,NCKAP1L,AQP5,LAPTM5,NCSTN,NEUROD1,TGFA,ARPC2,IHH,ITGB5,HMGB2,F2RL1,T,MELK,METTL3,GAS1,AVPR1A,NOD2,GCN1L1,SPINT2,CD320,PNOC,ACSM1,ECEL1,MGMT,IL16,N6AMT1,CD14,GNB2,PRKCB,SIRPG,NMUR1,ITPR1,ZBTB5,MT1E,HTR1E,FBXO22,EEF2,ATP6V0A4,F2,PSMD1,PSMD2,HSPA6,P2RY2,PSMC5,MAPK7,GSTM1,PTPN2,MID1,HNRNPD,GFRA4,SSNA1,KLHDC3,GPR88,ALOXE3,ANGPT2,USP9X,PLXND1,CPNE1,TNIP1,ROCK2,MC5R,OS9,BID,CXCR2,PCK1,EMR2,C8orf4,TRIP10,HCLS1,P2RY13,ASB8,PTH1R,SOX11,DDX54,ZNF771,HSPA5,WRAP53,SAV1,KARS,CARM1,CUL1,NCBP2,ATP13A2,BMP8A,DGKA,HAX1,LEPR,IL1R2,IP6K2,CD8B,GAST,CALCA,PTGDR2,GPR97,MAGEA2B,MX2,SHMT2,MAPK11,HAP1,GNAL,CACNA1H,MT1F,HSP90AA1,CBX3,RAD51C,HIP1,TUBA1B,CXCL14,IL21R,DNAJB2,MTDH,UBE2G2,UBA1,STARD13,ZC3H15,RASGRP2,ZFP91,RHOG,KAT5,TCF7,ACVR2B,SGK2,BTNL3,HNRNPA1,CAV3,BTNL8,PTGES,ADCY2,FOXN3,TNFSF13,MBTPS1,HMGB1,E2F1,FZD9,ANXA2,PLEKHB1,ANXA6,HNRNPA2B1,NEIL1,SORBS2,RET,FAS,TNFRSF10C,IGF2R,ICK,BMX,MCTP2,RAD23B,GMFB,RHOT1,PLXNB1,ARNT,MAP3K5,MYOF,XRCC6,ATP6V1H,FAM3C,CASS4,COL4A2,ITGB1BP1,CPZ,CYB5R3,ZEB1,CD3E,MAST2,MAP3K3,TLR1,DCLRE1A,PAX9,CHML,FH,MTR,LEFTY2,MARC2,ESRRG,EZR,NUCKS1,LRRN2,KDM5B,GPR37L1,BRINP3,NCF2,ADCY10,ATF6,CD244,AIM2,ETV3,EFNA1,SNX27,MLLT11,FCGR1A,CD58,EPS8L3,ELOVL4,GNAI3,GBF1,VAV3,POLL,BTRC,ABCA4,BCAR3,NSDHL,GBP2,CTH,ITGB3BP,MCTS1,RNF113A,NDOR1,RAB3B,IRS4,ZMPSTE24,CAP1,BMP8B,OSER1,FGR,ATP6V1G1,TMEM57,GDF5,BAK1,EDEM2,IGBP1,TMEM38B,ALPL,COL15A1,ATF6B,ZAK,DIRAS2,DDAH2,NPPB,RORB,UIMC1,CTNNBIP1,HRH2,TBC1D4,TNFRSF25,LIG3,BMP2,NUDT2,DNAJC15,FOXO1,POSTN,GPR64,GDI2,RPS6,TLR7,PDE4A,AKR1C2,FOXC1,SDC1,ITSN1,SIRPB1,GPNMB,FGFBP1,KCNA1,MSX1,CSPG5,SRGAP3,KRT18,HCAR2,TSSK1B,XRCC5,GRB2,CD79B,CBX1,PLXNA1,GAP43,CACNB1,AIMP1,GPR75,PRKCD,GIT1,SLC11A2,DAAM1,SEC31A,MFAP4,RABL2B,CXCL12,YWHAZ,RAB27A,KAT6A,NCF4,PPP3CC,KHSRP,CBSL,ENSP00000381234,SHARPIN,UBE2D2,DAAM2,KSR1,ROCK1,SIRPA,RDX,RASGRP3,APOBEC3A,CHRNA2,TCL1A,NCOA1,RPAIN,FOXO3,CPE,ALAD,IL1R1,CD8A,ARHGAP25,LAMB2,RARG,CASP4,CHEK1,TLR6,CYLD,SNX10,ENDOU,HMGA1,FOXA2,RANGAP1,TNRC6B,GRB7,ARRB2,SMC6,PBX1,PRKCA,ARRB1,LTB,ERLIN1,PTPRC,ALDH3A1,DEPDC1,BDNF,POLR2H,RARRES2,MME,SMYD3,PDE6B,ACSL1,STIMATE-MUSTN1,SMUG1,GNB2L1,LYN,MCF2,IKBKB,GSTK1,CD3G,HSPA8,KDM2A,B3GAT1,ATP6V0B,GRIK4,ADM,C12orf43,CD19,ACADVL,TLR5,GPR161,UBC,CCR3,PHB2,DAG1,CYFIP2,HCK,VDR,CD63,CLEC5A,UBE2J1,MAP3K9,SRP54,PSTPIP1,GPR176,ASIP,OBSCN,PECAM1,TRPV1,TOM1L1,VR1,RAB31,PITPNC1,S1PR2,MUM1,PLEKHH3,TNFSF14,PAK4,FPR1,FKBP8,GRIN2B,TCEB1,POLR2E,HIST1H4D,CLTC,SEPT2,EPHX1,CYP3A7,ADRA2B,PRODH,LRP5L,PLCG2,NR2E3,MILR1,FAM65B,ELK1,NPRL3,OR2S2
## 56 PDK4,RTFDC1,DERL2,TMEM161A,TNFRSF1A,FSTL3,CPB2,AQP2,RBM22,PSMD8,PABPN1,CYP24A1,PQBP1,CORO1A,PSMD7,AQP9,SFRP1,PAF1,POLR2I,STX1A,SERPINE1,GCK,COL1A1,IBSP,IL26,APOBEC1,TFPI,REG1A,RAMP3,PTGIS,SOX9,MKKS,CCR7,KLF2,MYOD1,BST2,BMP15,CD180,FST,PDGFRA,HILPDA,MDM2,IL36G,IL1RN,HTR3B,PREB,PSMC1,CASQ2,TRAF5,SNW1,RNF138,PSMD11,FLT4,MARS,SMAD2,FOXF1,CCNE1,UCP1,CAPZA1,ZNF106,KIF1B,CUL3,GUCY1B3,RAPGEF2,LEF1,STAP1,TIMP3,CD27,BIN2,PXN,IGF1R,IQGAP1,IRF8,LEFTY1,GDF7,RPS27A,RALB,ARL6IP5,GABRB2,KCNMB1,EGFR,HTR2C,HNRNPU,ACAA2,CYP2C18,AIFM1,ZFYVE9,HMHB1,SLAMF8,HTR6,IFNGR2,KCNE2,NCKAP1L,AQP5,LAPTM5,NCSTN,NEUROD1,ITGB5,HMGB2,T,MELK,GAS1,AVPR1A,NOD2,SPINT2,ACSM1,IL16,N6AMT1,CD14,PRKCB,MT1E,HTR1E,EEF2,ATP6V0A4,PSMD1,PSMD2,HSPA6,P2RY2,PSMC5,MAPK7,GSTM1,PTPN2,MID1,HNRNPD,GFRA4,KLHDC3,ANGPT2,USP9X,CPNE1,ROCK2,CXCR2,PCK1,EMR2,HCLS1,P2RY13,DDX54,HSPA5,KARS,CARM1,CUL1,NCBP2,ATP13A2,BMP8A,HAX1,LEPR,IL1R2,IP6K2,CALCA,MX2,SHMT2,MAPK11,HAP1,GNAL,CACNA1H,MT1F,HSP90AA1,CBX3,TUBA1B,CXCL14,IL21R,MTDH,UBE2G2,ZC3H15,RASGRP2,RHOG,KAT5,TCF7,ACVR2B,HNRNPA1,CAV3,ADCY2,TNFSF13,MBTPS1,HMGB1,E2F1,ANXA2,HNRNPA2B1,RET,FAS,RAD23B,ARNT,MAP3K5,XRCC6,ATP6V1H,COL4A2,ITGB1BP1,CYB5R3,ZEB1,MAP3K3,PAX9,MTR,LEFTY2,MARC2,ESRRG,EZR,KDM5B,BRINP3,NCF2,ADCY10,ATF6,AIM2,ETV3,FCGR1A,CD58,GNAI3,GBF1,VAV3,BTRC,BCAR3,GBP2,CTH,NDOR1,IRS4,BMP8B,OSER1,ATP6V1G1,GDF5,BAK1,TMEM38B,ALPL,ATF6B,RORB,HRH2,TBC1D4,TNFRSF25,BMP2,NUDT2,FOXO1,POSTN,PDE4A,AKR1C2,FOXC1,SDC1,FGFBP1,KCNA1,MSX1,KRT18,XRCC5,GRB2,CACNB1,GPR75,PRKCD,SLC11A2,SEC31A,CXCL12,YWHAZ,NCF4,KHSRP,SIRPA,RDX,APOBEC3A,TCL1A,NCOA1,FOXO3,ALAD,IL1R1,RARG,CASP4,TLR6,SNX10,FOXA2,RANGAP1,ARRB2,LTB,ALDH3A1,BDNF,POLR2H,RARRES2,MME,SMYD3,ACSL1,GNB2L1,LYN,MCF2,IKBKB,GSTK1,HSPA8,B3GAT1,ATP6V0B,ACADVL,UBC,CCR3,PHB2,DAG1,HCK,VDR,SRP54,ASIP,TRPV1,VR1,RAB31,TNFSF14,PAK4,FPR1,TCEB1,POLR2E,EPHX1,CYP3A7,PRODH,NR2E3,FAM65B,ELK1
## 57 ARF5,YIPF1,DERL2,KIF22,TNFRSF1A,TNS1,STK10,CDK13,AQP2,PPP1R13B,PSMD8,SNAP29,MYH9,PYGL,BDKRB1,PABPN1,EFS,C16orf70,CORO1A,PSMD7,PDIA2,AQP9,TG,DCTN6,PAF1,FCGRT,SGTA,RAB3D,STX1A,SERPINE1,GCK,P2RX5,SYNGR2,ASIC2,COL1A1,MANBA,APOC3,LTA4H,PARP11,APOBEC1,TULP1,SLC30A3,SLC9A2,PLEK,SELL,TTR,C2orf43,FKBP15,AFTPH,CCDC53,GJA3,RAMP3,CLTA,SRGN,SOX9,C3,MKKS,CCR7,ARL2,TUBA4A,APOL5,RAC2,CHRNA10,FAM155B,BST2,SLC6A8,EMR3,TERF2,AP3B1,SYNJ2BP,ELP3,DOCK2,DSC1,PDGFRA,MDM2,IL1RN,TUBB2B,HTR3B,PREB,PSMC1,CASQ2,C14orf166,PSMD11,ERP29,CHRNB4,FAT2,SNX1,RAB11A,SMAD2,ZC3H3,UCP1,RAB36,CAPZA1,APLP2,KIF1B,CUL3,RAPGEF2,IFT57,RAB17,KCNH4,SLC2A9,ANXA3,BST1,VCAN,LEF1,ABCB6,SEMA3C,TNPO3,NRXN2,ANK1,TIMP3,SLC5A1,ASCL1,BIN2,ITGB7,PXN,RAB15,TSPAN3,IGF1R,RHCG,IQGAP1,IRF8,SLC39A6,TIMM44,WRAP73,SFT2D2,RPS27A,SLC4A3,ARL6IP5,GABRB2,PCYOX1L,KCNMB1,EGFR,HTR2C,BIN3,SLC43A1,NINL,CCT5,GRIA4,NUBP1,HNRNPU,TRAPPC8,GPR15,ACAA2,LONP2,AIFM1,ZFYVE9,SLC6A1,SLAMF8,HTR6,KCNE2,PIP,DBN1,NCKAP1L,AQP5,NCSTN,NEUROD1,TGFA,ARPC2,ITGB5,OSBPL11,HMGB2,F2RL1,TLX3,T,NEMF,SLC9A5,NOD2,CA4,TUBA1A,TUBA1C,CD320,GUSB,IL16,STARD5,CD14,PRKCB,SIRPG,LETM1,NMUR1,PGK2,ITPR1,MRC2,KCNS1,FBXO22,EEF2,ATP6V0A4,F2,RPL15,PSMD1,PSMD2,HSPA6,LMAN1L,PSMC5,ABCD2,MID1,ATP10B,SSNA1,ANGPT2,USP9X,LIMCH1,PLXND1,CPNE1,ROCK2,OS9,BID,SUPT6H,CXCR2,EMR2,TRIP10,PITPNB,ACPP,UBE2O,A2M,HSPA5,WRAP53,APOLD1,CARM1,THOC6,NCBP2,ATP13A2,LEPR,IP6K2,CALCA,SPAG16,MFSD10,GPR97,MX2,HAP1,CACNA1H,FSCN2,HSP90AA1,HIP1,FIP1L1,TUBA1B,CENPA,CXCL14,ZBTB16,AP3S2,STARD13,RPS7,RHOG,ACVR2B,SGK2,GYG1,SEPT6,HNRNPA1,CAV3,SNRPD2,ABCA2,MBTPS1,QPCT,MYO1F,HMGB1,E2F1,VAPA,GATA2,FZD9,ANXA2,ANXA6,HNRNPA2B1,ITSN2,RET,AMPH,BICD2,IGF2R,ICK,GOLGA7,RHOT1,PLXNB1,SYN3,XRCC6,TECPR2,ATP6V1H,AP4M1,FAM3C,MAP4,CASS4,ITGB1BP1,CYB5R3,IPO9,CHML,LEFTY2,ENAH,SLC22A2,EZR,NCF2,F5,ADCY10,CD244,PEX19,CADM3,EFNA1,S100A13,SNX27,BUB3,DMBT1,CDC40,VPS45,SV2A,FCGR1A,CD58,DKC1,GNAI3,GBF1,VAV3,ABCA4,RPL5,GBP2,SLC25A28,STX16,RBP4,RAB3B,KIF20B,TBC1D13,ZMPSTE24,CAP1,TOMM34,MEGF9,STX12,FGR,ATP6V1G1,BAK1,RPL11,TMEM38B,MAGED2,PLA2G2D,UBR4,UPF3A,CROCC,MAPRE1,F7,KIF3B,SLC28A3,NPPB,SLC15A1,CNNM4,HRH2,ATXN2,TBC1D4,DNAJC15,XDH,RHOBTB3,GDI2,TUBB2A,RPS6,VPS16,FOXC1,SDC1,ITSN1,CCP110,SIRPB1,ATP8A2,CPPED1,KCNA1,MSX1,CSPG5,SEC13,KRT18,KCNQ3,XRCC5,GRB2,DBH,STEAP3,PICALM,PRCP,GOLGB1,PPP6R3,FABP6,CACNB1,CCDC109B,AIMP1,PRKCD,SLC11A2,FLOT2,ALDOA,SEC31A,RABL2B,CXCL12,YWHAZ,GCNT3,UMOD,RAB27A,AMPD3,NCF4,CD151,EIF4ENIF1,CHMP7,PPP3CC,SLC35E3,KHSRP,TMPRSS2,UBE2D2,SEPT7,ROCK1,SIRPA,SFI1,ZG16,RDX,CHRNA2,NCOA1,CLDN15,RPAIN,CPE,ALAD,TBC1D10B,ARHGAP25,LAMB2,DSN1,AGR2,HTATIP2,MYO1A,GCA,SNX10,SLC12A4,IK,SCN4A,KIAA0226L,ENDOU,PLAC8,HMGA1,SLC25A13,CAPZB,RANGAP1,SEPT4,HK1,GRB7,ARRB2,TMED7,IFT140,CLDN4,ARRB1,ERLIN1,PTPRC,BDNF,RPS24,RARRES2,PVRL3,CACNA2D2,MME,SMYD3,SLC4A2,THOC5,ACSL1,TRPC7,RNASET2,LYN,IKBKB,GSTK1,CD3G,HSPA8,BBIP1,ATP6V0B,TOR1AIP1,GRIK4,ADM,IST1,UBC,CCR3,PHB2,SLCO1C1,CYFIP2,HCK,SLC2A14,VDR,MGAM,LIN7A,CD63,CEP290,NACA,CLEC5A,C14orf79,SRP54,TNFAIP2,PSTPIP1,ASIP,SLC7A6,OBSCN,PECAM1,DNAH2,NUP88,CLUH,TRPV1,TOM1L1,VR1,RAB31,PITPNC1,DDX42,STX10,PAK4,FPR1,RER1,GRIN2B,CLTC,SEPT2,MTERF4,SLC6A6,FOXD1,PLCG2,PCSK6,MILR1,FAM65B,CABYR,ENSP00000485022
## p_value fdr description
## 52 3.55e-23 4.56e-19 Cellular process
## 53 7.35e-16 4.72e-12 Response to stimulus
## 54 1.43e-13 4.95e-10 Immune system process
## 55 1.16e-13 4.95e-10 Cellular response to stimulus
## 56 2.01e-13 5.17e-10 Cellular response to chemical stimulus
## 57 5.52e-13 1.18e-09 Localizationwrite.csv(enrichment_results_GO, "enrichment_results_GO_module4.csv", row.names = FALSE)