library(tidyverse)
## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr     1.1.4     ✔ readr     2.1.5
## ✔ forcats   1.0.0     ✔ stringr   1.5.1
## ✔ ggplot2   3.5.1     ✔ tibble    3.2.1
## ✔ lubridate 1.9.3     ✔ tidyr     1.3.1
## ✔ purrr     1.0.2     
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## ✖ dplyr::filter() masks stats::filter()
## ✖ dplyr::lag()    masks stats::lag()
## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
library(modeldata)
?ggplot
## starting httpd help server ... done
?crickets
view(crickets)
#the basics

ggplot(crickets, aes(x=temp,
                     y=rate,
                     color=species)) +
  geom_point() +
  labs(x='temperature',
       y='chirp rate',
       color='species',
       tittle='cricket chirps',
       caption='source:Mcdonald (2009)')+
  scale_color_brewer(palette='dark2')
## Warning: Unknown palette: "dark2"

#modifying basic properties of the plot

ggplot(crickets, aes(x=temp,y=rate,color=species)) +
  geom_point(color='red',
             size= 3,
             alpha=.3,
             shape='square') +
  labs(x='temperature', y='chirp rate',color='species',tittle='cricket chirps', caption='source:Mcdonald (2009)')+
  scale_color_brewer(palette='Dark2')

#learn more about the options for the geom
#with ?geom_point

#adding another layer
ggplot(crickets, aes(x = temp,
                     y = rate)) +
                     
  geom_point() +
  geom_smooth(method = 'lm',
              se = FALSE) +
  labs(x ='Temperature',
       y ='Chirp rate',
       tittle='Cricket chirps',
       caption ='Source:Mcdonald (2009)')
## `geom_smooth()` using formula = 'y ~ x'

ggplot(crickets, aes(x=temp,
                     y=rate,
                     color=species)) +
  geom_point() +
  geom_smooth(method='lm',
              se=FALSE)+
  labs(x ='temperature',
       y ='chirp rate',
       color ='species',
       tittle ='cricket chirps',
       caption ='source:Mcdonald (2009)')+
  scale_color_brewer(palette='Dark2')
## `geom_smooth()` using formula = 'y ~ x'

#other plots

ggplot(crickets, aes(x= rate)) +
  geom_histogram(bins= 15) #one quantitative variable

ggplot(crickets, aes(x= rate)) +
  geom_freqpoly(bins= 15)

ggplot(crickets,aes(x=species)) + 
  geom_bar(color = 'black',
           fill = 'lightgreen')

ggplot(crickets, aes(x= species,
                     fill= species)) +
  geom_bar(show.legend= FALSE) +
  scale_fill_brewer(palette= 'Dark2')

ggplot(crickets, aes(x= species,
                     y= rate,
                     color= species)) +
  geom_boxplot(show.legend= FALSE)+
  scale_color_brewer(palette= 'Dark2')

theme_minimal()
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?theme_minimal()

#faceting

ggplot(crickets, aes(x=rate,
                     fill= species)) +
  geom_histogram(bins= 15)+
  scale_fill_brewer(palette= 'Dark2')

ggplot(crickets, aes(x= rate,
                     fill=species))+
  geom_histogram(bins= 15,
                 show.legend = FALSE) +
  facet_wrap(~species) +
  scale_fill_brewer(palette= 'Dark2')

?facet_wrap

ggplot(crickets, aes(x= rate,
                     fill=species))+
  geom_histogram(bins= 15,
                 show.legend = FALSE) +
  facet_wrap(~species,
             ncol = 1) +
  scale_fill_brewer(palette= 'Dark2')