This material is based upon work supported by the U.S. Geological Survey under Grant/Cooperative Agreement No. G20AC00406, G23AC00118

References

Banner, Katharine M., Kathryn M. Irvine, Thomas J. Rodhouse, Wilson J. Wright, Roger M. Rodriguez, and Andrea R. Litt. 2018. “Improving Geographically-Extensive Acoustic Survey Designs for Modeling Species Occurrence with Imperfect Detection and Misidentification.” Ecology and Evolution 8 (12): 6144–56.
de Valpine, Perry, Christopher Paciorek, Daniel Turek, Nick Michaud, Cliff Anderson-Bergman, Fritz Obermeyer, Claudia Wehrhahn Cortes, Abel Rodrìguez, Duncan Temple Lang, and Sally Paganin. 2022. NIMBLE User Manual (version 0.12.2). https://doi.org/10.5281/zenodo.1211190.
de Valpine, Perry, Daniel Turek, Christopher Paciorek, Cliff Anderson-Bergman, Duncan Temple Lang, and Ras Bodik. 2017. “Programming with Models: Writing Statistical Algorithms for General Model Structures with NIMBLE.” Journal of Computational and Graphical Statistics 26: 403–13. https://doi.org/10.1080/10618600.2016.1172487.
Gelman, Andrew, John B. Carlin, Hal S. Stern, David B. Dunson, Aki Vehtari, and Donald B. Rubin. 2013. Bayesian Data Analysis, Third Edition, 3rd Edition. 3rd edition. CRC Press.
Kahle, David, and Hadley Wickham. 2013. “Ggmap: Spatial Visualization with Ggplot2.” The R Journal 5 (1): 144–61. http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf.
Larsen, David P., Anthony R. Olsen, and Jr. Donald L. Stevens. 2008. “Using a Master Sample to Integrate Stream Monitoring Programs.” Journal of Agricultural, Biological, and Environmental Statistics 13 (3): 243–54.
Loeb, Susan C., Thomas J. Rodhouse, Laura E. Ellison, Cori L. Lausen, Jonathan D. Reichard, Kathryn M. Irvine, Thomas E. Ingersoll, et al. 2015. “A Plan for the North American Bat Monitoring Program (NABat).” Report SRS-208. United States Deparment of Agriculture.
R Core Team. 2023. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Rodhouse, Thomas J., Patricia C. Ormsbee, Kathryn M. Irvine, Lee A. Vierling, Joseph M. Szewczak, and Kerri T. Vierling. 2012. “Assessing the Status and Trend of Bat Populations Across Broad Geographic Regions with Dynamic Distribution Models.” Ecological Applications 22 (4): 1098–1113.
———. 2015. “Establishing Conservation Baselines with Dynamic Distribution Models for Bat Populations Facing Imminent Decline.” Diversity and Distributions, 1–13.
Spiers, Anna I., J. Andrew Royle, Christa L. Torrens, and Maxwell B. Joseph. 2022. “Estimating Species Misclassification with Occupancy Dynamics and Encounter Rates: A Semi-Supervised, Individual-Level Approach.” Methods in Ecology and Evolution 13 (7): 1528–39. https://doi.org/https://doi.org/10.1111/2041-210X.13858.
Stratton, Christian, Kathryn M. Irvine, Katharine M. Banner, Wilson J. Wright, Cori Lausen, and Jason Rae. 2022. “Coupling Validation Effort with in Situ Bioacoustic Data Improves Estimating Relative Activity and Occupancy for Multiple Species with Cross-Species Misclassifications.” Methods in Ecology and Evolution 13 (6): 1288–1303. https://doi.org/https://doi.org/10.1111/2041-210X.13831.
Wickham, Hadley. 2016. Ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York. https://ggplot2.tidyverse.org.
Wright, Wilson J., Kathryn M. Irvine, Emily S. Almberg, and Andrea R. Litt. 2020. “Modelling Misclassification in Multi‐species Acoustic Data When Estimating Occupancy and Relative Activity.” Methods in Ecology and Evolution 11: 71–81. DOI: 10.1111/2041-210X.13315.
Wright, Wilson J., Kathryn M. Irvine, and Thomas J. Rodhouse. 2016. “A Goodness-of-Fit Test for Ocupancy Models with Correlated Within-Season Revisits.” Ecology and Evolution 6 (15): 5404–15.