Visium HD dataset with 10X sample ms brain pooled visual cortex sections

Collaborative Work Between Qiu and DAI lab, UA COM-Phoenix

This is a Zoom view of unsupervised clustering of a region of interest.

unsupervised clustering of all cortical samples.

UMAP embeddings of selected clusters:

unsupervised clustering

Detecting Pvalb gene expressing spot, most spots are centered on soma region:

Detecting Egr3 gene expressing spot, most spots are centered on soma region:

Egr3 gene spatial distribution

Spaceranger output metrics:

Carved out regions of interest-1:

Carved out regions of interest-2:

Carved out regions of interest-3:

Carved out regions of interest-4:

Carved out regions of interest-5: