Visium HD dataset with 10X sample ms heart sections

Collaborative Work Between Qiu and DAI lab, UA COM-Phoenix

This is a unsupervised clustering of all dissected cortical samples.

unsupervised clustering of three heart cross sections.

A1 chip unsupervised clustering:

unsupervised A1 chip clustering

Web Summary for A1 chip tissue metrics:

Web Summary for D1 chip tissue metrics:

Web Summary for A1 chip clustering metrics:

Web Summary for A1 chip clustering metrics

Web Summary for D1 chip clustering metrics:

Web Summary for D1 chip clustering metrics:

Web Summary for D1 chip clustering metrics

Zoom view of one HE stained tissue section:

Clustered spots overlaid on tissue section:

Selected gene expression change from control and experimental (decreased expression) sample:

Selected gene expression change

Selected gene expression change from control and experimental (increased expression) sample:

Selected gene expression change