Visium HD dataset with 10X sample ms brain pooled cortical sections

Collaborative Work Between Qiu and DAI lab, UA COM-Phoenix

This is a unsupervised clustering of all dissected cortical samples.

unsupervised clustering of all cortical samples, with one additional cluster.

UMAP embeddings of selected clusters:

unsupervised clustering

Detecting Pvalb gene expressing spot, most spots are centered on soma region:

Top50 features of the selected clusters from this sample:

Top50 features of the selected clusters

Spatial plot of selected (Gad1) gene

Violin plot of selected gene: