Autopsy_mortality
Aleksandar
2024-07-03
1. Broj smrtnih slučajeva po mesecima prema vrsti obdukcije
2. Broj smrtnih slučajeva po danima prema vrsti obdukcije
3. Broj smrtnih slučajeva po polu prema vrsti obdukcije
4. Broj smrtnih slučajeva po starosnoj grupi prema vrsti obdukcije
5. Broj smrtnih slučajeva po grupama MKB-10 prema vrsti obdukcije
6. Tabela: Karakteristike obdukcija*
data_mortality <- data_mortality |>
mutate(obdukacija_da_ne = case_when(
obdukcija == "Da - klinička" ~ "Obdukcija",
obdukcija == "Da - sudsko-medicinska" ~ "Obdukcija",
obdukcija == "Da - leš je oslobođen obdukcije" ~ "Nije bilo obdukcije",
obdukcija == "Ne" ~ "Nije bilo obdukcije",
))
data_mortality %>%
select(sex,
starost,
week_day_order,
year,
obdukacija_da_ne,
poreklo_smrti,
poreklo_smrti
) |>
tbl_summary(by = obdukacija_da_ne,
statistic = list(all_continuous() ~ "{mean} ({sd})",
all_categorical() ~ "{n} ({p}%)"),
digits = all_continuous() ~ 1,
type = all_categorical() ~ "categorical",
percent = "row"
) |>
add_overall(last = TRUE)| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 |
|---|---|---|---|
| sex | |||
| female | 1,834 (63%) | 1,062 (37%) | 2,896 (100%) |
| male | 2,125 (62%) | 1,317 (38%) | 3,442 (100%) |
| starost | 70.4 (14.0) | 67.9 (16.5) | 69.5 (15.0) |
| Unknown | 2 | 4 | 6 |
| week_day_order | |||
| Mon | 635 (63%) | 370 (37%) | 1,005 (100%) |
| Tue | 568 (60%) | 371 (40%) | 939 (100%) |
| Wed | 576 (66%) | 291 (34%) | 867 (100%) |
| Thu | 542 (70%) | 237 (30%) | 779 (100%) |
| Fri | 540 (61%) | 344 (39%) | 884 (100%) |
| Sat | 531 (61%) | 345 (39%) | 876 (100%) |
| Sun | 567 (57%) | 421 (43%) | 988 (100%) |
| year | |||
| 2017 | 1,265 (62%) | 783 (38%) | 2,048 (100%) |
| 2018 | 1,083 (57%) | 829 (43%) | 1,912 (100%) |
| 2019 | 1,611 (68%) | 767 (32%) | 2,378 (100%) |
| poreklo_smrti | |||
| Nasilna | 262 (39%) | 408 (61%) | 670 (100%) |
| Neutvrđeno | 84 (24%) | 259 (76%) | 343 (100%) |
| Prirodna | 3,613 (68%) | 1,712 (32%) | 5,325 (100%) |
| 1 n (%); Mean (SD) | |||
- all_continuous() ~ “{mean} ({sd})”,
- all_categorical() ~ “{n} ({p}%)”
6.1. Testovi značajnosti sex
| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 | p-value2 |
|---|---|---|---|---|
| sex | 0.2 | |||
| female | 1,834 (63%) | 1,062 (37%) | 2,896 (100%) | |
| male | 2,125 (62%) | 1,317 (38%) | 3,442 (100%) | |
| 1 n (%) | ||||
| 2 Pearson’s Chi-squared test | ||||
6.2. Testovi značajnosti starost
| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 | p-value2 |
|---|---|---|---|---|
| starost | 70.4 (14.0) | 67.9 (16.5) | 69.5 (15.0) | <0.001 |
| Unknown | 2 | 4 | 6 | |
| 1 Mean (SD) | ||||
| 2 Kruskal-Wallis rank sum test | ||||
6.3. Testovi značajnosti dani u nedelji
| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 | p-value2 |
|---|---|---|---|---|
| week_day_order | <0.001 | |||
| Mon | 635 (63%) | 370 (37%) | 1,005 (100%) | |
| Tue | 568 (60%) | 371 (40%) | 939 (100%) | |
| Wed | 576 (66%) | 291 (34%) | 867 (100%) | |
| Thu | 542 (70%) | 237 (30%) | 779 (100%) | |
| Fri | 540 (61%) | 344 (39%) | 884 (100%) | |
| Sat | 531 (61%) | 345 (39%) | 876 (100%) | |
| Sun | 567 (57%) | 421 (43%) | 988 (100%) | |
| 1 n (%) | ||||
| 2 Pearson’s Chi-squared test | ||||
6.3. Testovi značajnosti 2017-2019
| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 | p-value2 |
|---|---|---|---|---|
| year | <0.001 | |||
| 2017 | 1,265 (62%) | 783 (38%) | 2,048 (100%) | |
| 2018 | 1,083 (57%) | 829 (43%) | 1,912 (100%) | |
| 2019 | 1,611 (68%) | 767 (32%) | 2,378 (100%) | |
| 1 n (%) | ||||
| 2 Pearson’s Chi-squared test | ||||
6.3. Testovi značajnosti poreklo smrti*
| Characteristic | Nije bilo obdukcije, N = 3,9591 | Obdukcija, N = 2,3791 | Overall, N = 6,3381 | p-value2 |
|---|---|---|---|---|
| poreklo_smrti | <0.001 | |||
| Nasilna | 262 (39%) | 408 (61%) | 670 (100%) | |
| Neutvrđeno | 84 (24%) | 259 (76%) | 343 (100%) | |
| Prirodna | 3,613 (68%) | 1,712 (32%) | 5,325 (100%) | |
| 1 n (%) | ||||
| 2 Pearson’s Chi-squared test | ||||
- Fisher Test
7.1. Najčešći osnovni uzroci smrti ‘’Da sudsko-medicinska’’
Grupisano na prva tri simbola ICD-10. Tromesna sifra
## # A tibble: 20 × 4
## osnovni_tromesna_sifra broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 R99 200 0.224 22.45%
## 2 I46 157 0.176 17.62%
## 3 W19 117 0.131 13.13%
## 4 R96 53 0.0595 5.95%
## 5 V09 35 0.0393 3.93%
## 6 Y34 32 0.0359 3.59%
## 7 V99 30 0.0337 3.37%
## 8 V49 20 0.0224 2.24%
## 9 W01 20 0.0224 2.24%
## 10 V03 16 0.0180 1.80%
## 11 I61 15 0.0168 1.68%
## 12 W17 13 0.0146 1.46%
## 13 W10 12 0.0135 1.35%
## 14 W13 10 0.0112 1.12%
## 15 V29 8 0.00898 0.90%
## 16 X09 8 0.00898 0.90%
## 17 I62 7 0.00786 0.79%
## 18 X95 7 0.00786 0.79%
## 19 Y04 7 0.00786 0.79%
## 20 X72 6 0.00673 0.67%7.2. Najčešći osnovni uzroci smrti ‘’Da leš je oslobodjen’’
Grupisano na prva tri simbola ICD-10. Tromesna sifra
## # A tibble: 20 × 4
## osnovni_tromesna_sifra broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I46 159 0.279 27.89%
## 2 W19 124 0.218 21.75%
## 3 R99 72 0.126 12.63%
## 4 W01 35 0.0614 6.14%
## 5 X09 16 0.0281 2.81%
## 6 Y34 16 0.0281 2.81%
## 7 I62 15 0.0263 2.63%
## 8 I61 13 0.0228 2.28%
## 9 W17 13 0.0228 2.28%
## 10 W10 11 0.0193 1.93%
## 11 R96 10 0.0175 1.75%
## 12 V99 8 0.0140 1.40%
## 13 I60 7 0.0123 1.23%
## 14 V49 5 0.00877 0.88%
## 15 I42 4 0.00702 0.70%
## 16 W14 4 0.00702 0.70%
## 17 C34 3 0.00526 0.53%
## 18 J44 3 0.00526 0.53%
## 19 V19 3 0.00526 0.53%
## 20 V84 3 0.00526 0.53%7.3. Najčešći osnovni uzroci smrti ‘’Da - klinička’’
Grupisano na prva tri simbola ICD-10. Tromesna sifra
## # A tibble: 20 × 4
## osnovni_tromesna_sifra broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I21 211 0.142 14.18%
## 2 I46 86 0.0578 5.78%
## 3 K92 65 0.0437 4.37%
## 4 I42 58 0.0390 3.90%
## 5 E11 44 0.0296 2.96%
## 6 J18 41 0.0276 2.76%
## 7 K56 39 0.0262 2.62%
## 8 C34 36 0.0242 2.42%
## 9 I25 33 0.0222 2.22%
## 10 I71 33 0.0222 2.22%
## 11 K55 33 0.0222 2.22%
## 12 I26 30 0.0202 2.02%
## 13 K85 29 0.0195 1.95%
## 14 N18 29 0.0195 1.95%
## 15 I50 26 0.0175 1.75%
## 16 K70 23 0.0155 1.55%
## 17 I10 21 0.0141 1.41%
## 18 C25 20 0.0134 1.34%
## 19 I63 20 0.0134 1.34%
## 20 K74 20 0.0134 1.34%7.4. Najčešći osnovni uzroci smrti ‘’Nije bila odbukcije’’
Grupisano na prva tri simbola ICD-10. Tromesna sifra
## # A tibble: 20 × 4
## osnovni_tromesna_sifra broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I21 390 0.115 11.51%
## 2 I61 221 0.0652 6.52%
## 3 C34 146 0.0431 4.31%
## 4 I42 140 0.0413 4.13%
## 5 I63 98 0.0289 2.89%
## 6 J18 94 0.0277 2.77%
## 7 K26 90 0.0266 2.66%
## 8 I60 83 0.0245 2.45%
## 9 N18 77 0.0227 2.27%
## 10 K56 76 0.0224 2.24%
## 11 I26 69 0.0204 2.04%
## 12 I25 65 0.0192 1.92%
## 13 K70 65 0.0192 1.92%
## 14 C18 63 0.0186 1.86%
## 15 E11 63 0.0186 1.86%
## 16 I50 61 0.0180 1.80%
## 17 I46 60 0.0177 1.77%
## 18 C25 57 0.0168 1.68%
## 19 K92 45 0.0133 1.33%
## 20 K55 43 0.0127 1.27%7.5. Najčešći osnovni uzroci smrti ‘’Total’’
Grupisano na prva tri simbola ICD-10. Tromesna sifra
## # A tibble: 20 × 4
## osnovni_tromesna_sifra broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I21 608 0.0959 9.59%
## 2 I46 462 0.0729 7.29%
## 3 R99 272 0.0429 4.29%
## 4 I61 268 0.0423 4.23%
## 5 W19 241 0.0380 3.80%
## 6 I42 205 0.0323 3.23%
## 7 C34 185 0.0292 2.92%
## 8 J18 142 0.0224 2.24%
## 9 I63 121 0.0191 1.91%
## 10 K56 117 0.0185 1.85%
## 11 K92 111 0.0175 1.75%
## 12 E11 108 0.0170 1.70%
## 13 K26 108 0.0170 1.70%
## 14 N18 107 0.0169 1.69%
## 15 I60 100 0.0158 1.58%
## 16 I26 99 0.0156 1.56%
## 17 I25 98 0.0155 1.55%
## 18 I50 90 0.0142 1.42%
## 19 K70 88 0.0139 1.39%
## 20 C18 79 0.0125 1.25%8.1. Najčešći neposredni uzroci smrti ‘’Da sudsko-medicinska’’
## # A tibble: 20 × 4
## neposredni broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 R99 200 0.224 22.45%
## 2 S062 133 0.149 14.93%
## 3 I469 124 0.139 13.92%
## 4 S065 72 0.0808 8.08%
## 5 T07 66 0.0741 7.41%
## 6 R961 53 0.0595 5.95%
## 7 I461 37 0.0415 4.15%
## 8 T068 22 0.0247 2.47%
## 9 S063 18 0.0202 2.02%
## 10 T149 11 0.0123 1.23%
## 11 A419 9 0.0101 1.01%
## 12 T293 8 0.00898 0.90%
## 13 I620 6 0.00673 0.67%
## 14 S064 6 0.00673 0.67%
## 15 I619 5 0.00561 0.56%
## 16 S270 5 0.00561 0.56%
## 17 S066 4 0.00449 0.45%
## 18 S067 4 0.00449 0.45%
## 19 S097 4 0.00449 0.45%
## 20 I610 3 0.00337 0.34%8.2. Najčešći neposredni uzroci smrti ‘’Da leš je oslobodjen’’
## # A tibble: 20 × 4
## neposredni broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I469 151 0.265 26.49%
## 2 S062 96 0.168 16.84%
## 3 S065 76 0.133 13.33%
## 4 R99 72 0.126 12.63%
## 5 S063 18 0.0316 3.16%
## 6 T293 16 0.0281 2.81%
## 7 I620 11 0.0193 1.93%
## 8 R961 10 0.0175 1.75%
## 9 T068 10 0.0175 1.75%
## 10 I461 9 0.0158 1.58%
## 11 S064 7 0.0123 1.23%
## 12 T07 7 0.0123 1.23%
## 13 I610 6 0.0105 1.05%
## 14 S066 5 0.00877 0.88%
## 15 I600 4 0.00702 0.70%
## 16 I618 4 0.00702 0.70%
## 17 A419 3 0.00526 0.53%
## 18 C349 3 0.00526 0.53%
## 19 I609 3 0.00526 0.53%
## 20 J180 3 0.00526 0.53%8.3. Najčešći neposredni uzroci smrti ‘’Da - klinička’’
## # A tibble: 20 × 4
## neposredni broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I469 133 0.0894 8.94%
## 2 A419 96 0.0645 6.45%
## 3 I48 76 0.0511 5.11%
## 4 I210 63 0.0423 4.23%
## 5 I211 52 0.0349 3.49%
## 6 I219 47 0.0316 3.16%
## 7 K920 39 0.0262 2.62%
## 8 K566 35 0.0235 2.35%
## 9 K921 33 0.0222 2.22%
## 10 I260 31 0.0208 2.08%
## 11 I214 27 0.0181 1.81%
## 12 C349 25 0.0168 1.68%
## 13 J189 25 0.0168 1.68%
## 14 K550 22 0.0148 1.48%
## 15 K625 21 0.0141 1.41%
## 16 K922 21 0.0141 1.41%
## 17 I255 20 0.0134 1.34%
## 18 K650 19 0.0128 1.28%
## 19 K85 18 0.0121 1.21%
## 20 I429 17 0.0114 1.14%8.4. Najčešći neposredni uzroci smrti ‘’Nije bila odbukcije’’
## # A tibble: 20 × 4
## neposredni broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I469 249 0.0735 7.35%
## 2 A419 190 0.0561 5.61%
## 3 C349 108 0.0319 3.19%
## 4 I48 101 0.0298 2.98%
## 5 K650 94 0.0277 2.77%
## 6 I219 85 0.0251 2.51%
## 7 I210 84 0.0248 2.48%
## 8 I211 83 0.0245 2.45%
## 9 J189 81 0.0239 2.39%
## 10 I214 71 0.0210 2.10%
## 11 I260 70 0.0207 2.07%
## 12 I612 66 0.0195 1.95%
## 13 I639 59 0.0174 1.74%
## 14 K566 59 0.0174 1.74%
## 15 K921 49 0.0145 1.45%
## 16 I610 44 0.0130 1.30%
## 17 I619 44 0.0130 1.30%
## 18 I429 42 0.0124 1.24%
## 19 I609 42 0.0124 1.24%
## 20 I620 37 0.0109 1.09%8.5. Najčešći neposredni uzroci smrti ‘’Total’’
## # A tibble: 20 × 4
## neposredni broj procenat procenat_znak
## <chr> <int> <dbl> <formttbl>
## 1 I469 657 0.104 10.37%
## 2 A419 298 0.0470 4.70%
## 3 R99 272 0.0429 4.29%
## 4 S062 229 0.0361 3.61%
## 5 I48 179 0.0282 2.82%
## 6 I210 150 0.0237 2.37%
## 7 S065 148 0.0234 2.34%
## 8 C349 136 0.0215 2.15%
## 9 I211 135 0.0213 2.13%
## 10 I219 134 0.0211 2.11%
## 11 K650 115 0.0181 1.81%
## 12 J189 111 0.0175 1.75%
## 13 I260 101 0.0159 1.59%
## 14 I214 99 0.0156 1.56%
## 15 K566 95 0.0150 1.50%
## 16 K921 85 0.0134 1.34%
## 17 I612 77 0.0121 1.21%
## 18 T07 74 0.0117 1.17%
## 19 I639 71 0.0112 1.12%
## 20 K920 69 0.0109 1.09%