1 Modelos de distribucion de especies I
1.1 Uso de GBIF para el manejo de datos en conservación
GBIF es la Global Biodiversity Information Facility. Una red de infraestructura de datos internacional financiada por distintos gobiernos. Su objetivo es proporcionar acceso libre y gratuito a datos sobre biodiversidad a nivel mundial. GBIF movilizan datos de diversas fuentes incluyendo museos, herbarios, instituciones de investigación y ciudadanos científicos para ponerlos a disposición del la comunidad en un único portal. Las principales características y funciones de GBIF incluyen: - Agregación de datos: GBIF agrega datos sobre biodiversidad de diversas instituciones y organizaciones, creando un conjunto de datos completo e interoperable. - Accesibilidad a los datos: GBIF proporciona una plataforma para que los usuarios accedan a una gran cantidad de datos sobre biodiversidad. Los investigadores, los responsables políticos y el público en general pueden utilizar la información para diversos fines, como la investigación científica, planificación de la conservación y la toma de decisiones. - Estándares de datos: GBIF promueve el uso de estándares comunes para los datos de biodiversidad, asegurando que la información de diferentes fuentes pueda ser fácilmente integrada y comparada. - Colaboración Internacional: GBIF fomenta la colaboración entre países y organizaciones para compartir datos sobre biodiversidad a nivel mundial. Funciona como una red de nodos, cada uno de los cuales representa a un país o región. - Informática de la Biodiversidad: GBIF desempeña un papel en el avance de la informática de la biodiversidad, que implica el uso de tecnología informática para gestionar y analizar datos de biodiversidad.
Al proporcionar una plataforma unificada para acceder a los datos de biodiversidad, GBIF contribuye a la comprensión global de los patrones de biodiversidad, ayuda a controlar los cambios en los ecosistemas y apoya los esfuerzos relacionados con la conservación y el desarrollo sostenible. Investigadores y responsables políticos confían a menudo en GBIF para acceder a información actualizada y completa sobre biodiversidad para su trabajo.
Existen además distintas API orientadas a distintos lenguajes informáticos para acceder a esta información. (i.e. Ruby, Python, PHP y R). Aquí utilizaremos R para poder acceder a datos de GBIF como parte de la practica de hacer ciencia abierta.
1.1.1 Estudio de distribución de especies usando datos de GBIF
Vamos a hacer un modelo de distribucion de especies para Cyanoliseus patagonus. Aquí una descripción del loro tricahue.
¿Cuántos registros de presencia hay para Chile?
La función occ_count() retorna la cantidad de registros
de presencia de acuerdo con criterios como código del taxón (taxonKey),
tipo de registro (basisOfRecord), país y año, entre otros.
Por ejemplo, occ_count() retorna 2.9452364^{9}, el
número total de registros en la base de datos.
Ahora, occ_count() acepta una variedad de parámetros
(ver ?occ_count) como por ejemplo, el conteo de registros
georreferenciados o bien el número de registros por país. Chile en este
caso.
## Número de registros totales con georeferencia para Chile
occ_count(country = "CL", hasCoordinate = TRUE, hasGeospatialIssue = FALSE)## [1] 10599733Un ejemplo: ¿Cuántos registros georeferenciado de tricahue (Cyanoliseus patagonus) existen en GBIF?
name <- name_backbone(name = "Cyanoliseus patagonus", rank = "species") # Obtención del código del taxón
print(name[, c("usageKey", "scientificName")])## # A tibble: 1 × 2
## usageKey scientificName
## <int> <chr>
## 1 2479529 Cyanoliseus patagonus (Vieillot, 1818)Usando el número de registro para Cyanoliseus patagonus en la Base de datos GBIF podemos contarlos:
p_en_cl <- occ_count(taxonKey = 2479529, country = "CL", hasCoordinate = TRUE, hasGeospatialIssue = FALSE)Hay entonces, 5198 registros georeferenciados en Chile en la base de datos de GBIF!
- Aqui una guía para trabajar con nombres taxonómicos.
1.2 El loro tricahue (Cyanoliseus patagonus)
Ahora, podemos describir la distribucion de Cyanoliseus patagonus.
Cyanoliseus patagonus (Molina,
1782)
- Aqui encuentras la ficha del Ministerio del Medio Ambiente aqui para esta especie.
Usaremos dos funciones de la librería rgbif para
descargar los registros georeferenciados de tricahue en Chile. Con
occ_search() y occ_data() puedes recuperar
esto y obtener todos los registros existentes. Entre ellos, nos
interesará el nombre científico, país,
continente, fecha, entre otros datos.
occ_search nos da un resumen de resultados como los del
paquete dplyr de Tidyverse que nos será muy útil para
filtrar, seleccionar y agrupar los registros, mientras que
occ_data está optimizada para ser más eficiente y se
recomienda en caso de buscar un volumen mayor de información desde
GBIF.
- Ojo -> Sólo se entregan máximo de 100000 registros en cada llamada.
- Mas info aqui para descargas de datos.
spp = "Cyanoliseus patagonus"
cp <- occ_data(scientificName = spp, country = "CL", limit = 1e+06, hasCoordinate = TRUE,
hasGeospatialIssue = FALSE)
print(dim(cp$data))## [1] 5198 144Al bajar los datos de GBIF, creamos el objeto cp que
tiene los datos en cp$data.
Vemos (con: dim(cp$data)) que la consulta nos retornó
5198 registros (filas) y 144 columnas de información para cada registro.
Esos son muchos datos para cada registro. Debemos evaluar qué son y ver
cuales nos son útiles!!!
Lista completa de columnas que tiene este objeto. Veamos la lista de
nombres de columnas con names():
names(cp$data) |>
kbl() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed"), fixed_thead = T) |>
scroll_box(width = "100%", height = "350px")| x |
|---|
| key |
| scientificName |
| decimalLatitude |
| decimalLongitude |
| issues |
| datasetKey |
| publishingOrgKey |
| installationKey |
| hostingOrganizationKey |
| publishingCountry |
| protocol |
| lastCrawled |
| lastParsed |
| crawlId |
| basisOfRecord |
| occurrenceStatus |
| taxonKey |
| kingdomKey |
| phylumKey |
| classKey |
| orderKey |
| familyKey |
| genusKey |
| speciesKey |
| acceptedTaxonKey |
| acceptedScientificName |
| kingdom |
| phylum |
| order |
| family |
| genus |
| species |
| genericName |
| specificEpithet |
| infraspecificEpithet |
| taxonRank |
| taxonomicStatus |
| dateIdentified |
| coordinateUncertaintyInMeters |
| continent |
| stateProvince |
| year |
| month |
| day |
| eventDate |
| startDayOfYear |
| endDayOfYear |
| modified |
| lastInterpreted |
| references |
| license |
| isSequenced |
| isInCluster |
| datasetName |
| recordedBy |
| identifiedBy |
| geodeticDatum |
| class |
| countryCode |
| gbifRegion |
| country |
| publishedByGbifRegion |
| rightsHolder |
| identifier |
| http://unknown.org/nick |
| verbatimEventDate |
| collectionCode |
| gbifID |
| verbatimLocality |
| occurrenceID |
| taxonID |
| catalogNumber |
| institutionCode |
| eventTime |
| http://unknown.org/captive |
| identificationID |
| iucnRedListCategory |
| individualCount |
| vernacularName |
| taxonConceptID |
| county |
| locality |
| distanceFromCentroidInMeters |
| lifeStage |
| occurrenceRemarks |
| name |
| preparations |
| nomenclaturalCode |
| dynamicProperties |
| fieldNotes |
| behavior |
| verbatimElevation |
| higherClassification |
| identificationRemarks |
| informationWithheld |
| projectId |
| establishmentMeans |
| degreeOfEstablishment |
| eventID |
| institutionID |
| verbatimSRS |
| verbatimCoordinateSystem |
| language |
| type |
| originalNameUsage |
| ownerInstitutionCode |
| bibliographicCitation |
| reproductiveCondition |
| collectionID |
| verbatimTaxonRank |
| samplingProtocol |
| georeferencedBy |
| accessRights |
| georeferenceSources |
| locationRemarks |
| coordinatePrecision |
| elevation |
| elevationAccuracy |
| higherGeography |
| organismQuantity |
| organismQuantityType |
| georeferencedDate |
| acceptedNameUsage |
| georeferenceProtocol |
| namePublishedInYear |
| associatedReferences |
| municipality |
| eventRemarks |
| taxonRemarks |
| acceptedNameUsageID |
| networkKeys |
| sex |
| institutionKey |
| collectionKey |
| recordNumber |
| datasetID |
| georeferenceRemarks |
| disposition |
| previousIdentifications |
| otherCatalogNumbers |
| georeferenceVerificationStatus |
| identificationReferences |
| fieldNumber |
| higherGeographyID |
De la misma manera, podemos ver en que localidades ocurrienron los
muestreos, el comando unique() muestra los valores únicos
en el vector cp$data$locality:
unique(cp$data$municipality) |>
kbl() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed"), fixed_thead = T) |>
scroll_box(width = "100%", height = "350px")| x |
|---|
| NA |
| Chimbarongo |
| Cordillera De Santiago |
| Cordillera De Talca |
| Cordillera de Colchagua |
| Cordillera De Aconcagua |
1.3 Construcción de un set de datos geográfico
Cada registro tiene asociado coordenadas geográficas, lo que nos
permite transformar esta tabla a un objeto de tipo sf (simple
feature). Con eso podemos representarlo espacialmente.
Primero transformamos estos datos en un objeto “geográfico” de
sf usando las columnas "decimalLongitude" para
x y "decimalLatitude" para y. Hay
que tambien designar la proyección geográfico. Aqui es simplemente la
latlon (epsg: 4326).
ahora, veamos nuevamente la tabla completa:
# mostramos las primeras 20 lineas
cp_sf[1:20, ] |>
kbl() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) |>
scroll_box(width = "100%", height = "400px")| key | scientificName | issues | datasetKey | publishingOrgKey | installationKey | hostingOrganizationKey | publishingCountry | protocol | lastCrawled | lastParsed | crawlId | basisOfRecord | occurrenceStatus | taxonKey | kingdomKey | phylumKey | classKey | orderKey | familyKey | genusKey | speciesKey | acceptedTaxonKey | acceptedScientificName | kingdom | phylum | order | family | genus | species | genericName | specificEpithet | infraspecificEpithet | taxonRank | taxonomicStatus | dateIdentified | coordinateUncertaintyInMeters | continent | stateProvince | year | month | day | eventDate | startDayOfYear | endDayOfYear | modified | lastInterpreted | references | license | isSequenced | isInCluster | datasetName | recordedBy | identifiedBy | geodeticDatum | class | countryCode | gbifRegion | country | publishedByGbifRegion | rightsHolder | identifier | http://unknown.org/nick | verbatimEventDate | collectionCode | gbifID | verbatimLocality | occurrenceID | taxonID | catalogNumber | institutionCode | eventTime | http://unknown.org/captive | identificationID | iucnRedListCategory | individualCount | vernacularName | taxonConceptID | county | locality | distanceFromCentroidInMeters | lifeStage | occurrenceRemarks | name | preparations | nomenclaturalCode | dynamicProperties | fieldNotes | behavior | verbatimElevation | higherClassification | identificationRemarks | informationWithheld | projectId | establishmentMeans | degreeOfEstablishment | eventID | institutionID | verbatimSRS | verbatimCoordinateSystem | language | type | originalNameUsage | ownerInstitutionCode | bibliographicCitation | reproductiveCondition | collectionID | verbatimTaxonRank | samplingProtocol | georeferencedBy | accessRights | georeferenceSources | locationRemarks | coordinatePrecision | elevation | elevationAccuracy | higherGeography | organismQuantity | organismQuantityType | georeferencedDate | acceptedNameUsage | georeferenceProtocol | namePublishedInYear | associatedReferences | municipality | eventRemarks | taxonRemarks | acceptedNameUsageID | networkKeys | sex | institutionKey | collectionKey | recordNumber | datasetID | georeferenceRemarks | disposition | previousIdentifications | otherCatalogNumbers | georeferenceVerificationStatus | identificationReferences | fieldNumber | higherGeographyID | geometry |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4512170484 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:13:20.631+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-01-11T02:56:57 | 15 | SOUTH_AMERICA | Maule | 2024 | 1 | 9 | 2024-01-09T18:49 | 9 | 9 | 2024-01-11T14:26:49.000+00:00 | 2024-05-20T17:13:20.631+00:00 | https://www.inaturalist.org/observations/196322807 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | rodrigo_contreras-aguilera | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | rodrigo_contreras-aguilera | 196322807 | rodrigo_contreras-aguilera | 2024/01/09 6:49 PM | Observations | 4512170484 | Talca, Maule, Chile | https://www.inaturalist.org/observations/196322807 | 464902 | 196322807 | iNaturalist | 18:49:00-03:00 | wild | 442210250 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.75183 -35.82578) |
| 4512327452 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:19.115+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-01-13T02:56:27 | 303 | SOUTH_AMERICA | Maule | 2024 | 1 | 12 | 2024-01-12T18:41:28 | 12 | 12 | 2024-01-13T13:26:36.000+00:00 | 2024-05-20T17:54:19.115+00:00 | https://www.inaturalist.org/observations/196476031 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | humesca_scs | humesca_scs | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | humesca_scs | 196476031 | humesca_scs | 2024-01-12 18:41:28 | Observations | 4512327452 | San Clemente, Maule, Chile | https://www.inaturalist.org/observations/196476031 | 19347 | 196476031 | iNaturalist | 18:41:28-03:00 | wild | 442700327 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.07884 -35.70519) |
| 4512314177 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:14:17.972+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-01-15T11:54:20 | 164 | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 1 | 13 | 2024-01-13T10:17:23 | 13 | 13 | 2024-01-24T19:49:13.000+00:00 | 2024-05-20T17:14:17.972+00:00 | https://www.inaturalist.org/observations/196749297 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Diego Brito | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Diego Brito | 196749297 | dj_brito | 2024-01-13 10:17:23 | Observations | 4512314177 | Requínoa, O’Higgins, Chile | https://www.inaturalist.org/observations/196749297 | 464902 | 196749297 | iNaturalist | 10:17:23-03:00 | wild | 443429889 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.58024 -34.2795) |
| 4522832363 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:01.269+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-02-13T16:31:21 | 244 | SOUTH_AMERICA | Coquimbo | 2024 | 1 | 26 | 2024-01-26T10:09 | 26 | 26 | 2024-02-13T17:22:41.000+00:00 | 2024-05-20T17:51:01.269+00:00 | https://www.inaturalist.org/observations/199196753 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Matt and Kaysea Bruce | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Matt and Kaysea Bruce | 199196753 | kaysea10 | 2024/01/26 10:09 AM | Observations | 4522832363 | Elqui Province, Coquimbo, Chile | https://www.inaturalist.org/observations/199196753 | 464902 | 199196753 | iNaturalist | 10:09:00-03:00 | wild | 451100192 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.08678 -29.81214) |
| 4525219959 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:12:28.710+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-02-18T03:38:06 | NA | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 2 | 15 | 2024-02-15T18:42:38 | 46 | 46 | 2024-02-19T11:11:44.000+00:00 | 2024-05-20T17:12:28.710+00:00 | https://www.inaturalist.org/observations/199635456 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Manuel Palacios | Manuel Palacios | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Manuel Palacios | 199635456 | mpalacios | 2024-02-15 18:42:38 | Observations | 4525219959 | Requínoa, O’Higgins, Chile | https://www.inaturalist.org/observations/199635456 | 19347 | 199635456 | iNaturalist | 18:42:38-03:00 | wild | 452332374 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.83371 -34.25238) |
| 4597027436 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:16:35.841+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-03-13T14:34:28 | NA | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T15:33 | 54 | 54 | 2024-03-15T15:29:24.000+00:00 | 2024-05-20T17:16:35.841+00:00 | https://www.inaturalist.org/observations/202278588 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 202278588 | christoph_moning | 2024/02/23 3:33 PM | Observations | 4597027436 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/202278588 | 464902 | 202278588 | iNaturalist | 15:33:00-03:00 | wild | 459406351 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.24567 -35.55909) |
| 4853098317 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:47.084+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 4 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:45 | 54 | 54 | 2024-04-23T19:07:06.000+00:00 | 2024-05-20T17:54:47.084+00:00 | https://www.inaturalist.org/observations/208892784 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892784 | christoph_moning | 2024/02/23 1:45 PM | Observations | 4853098317 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892784 | 464902 | 208892784 | iNaturalist | 13:45:00-03:00 | wild | 474455995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.24544 -35.5592) |
| 4852932624 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:56:00.629+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:48 | 54 | 54 | 2024-04-23T19:07:03.000+00:00 | 2024-05-20T17:56:00.629+00:00 | https://www.inaturalist.org/observations/208892789 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892789 | christoph_moning | 2024/02/23 1:48 PM | Observations | 4852932624 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892789 | 464902 | 208892789 | iNaturalist | 13:48:00-03:00 | wild | 474456000 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.24528 -35.5592) |
| 4851810375 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:54.771+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:50 | 54 | 54 | 2024-04-23T19:07:35.000+00:00 | 2024-05-20T17:54:54.771+00:00 | https://www.inaturalist.org/observations/208892790 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892790 | christoph_moning | 2024/02/23 1:50 PM | Observations | 4851810375 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892790 | 464902 | 208892790 | iNaturalist | 13:50:00-03:00 | wild | 474456001 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.2454 -35.55916) |
| 4853004180 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:59.509+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:14 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:50 | 54 | 54 | 2024-04-23T19:05:19.000+00:00 | 2024-05-20T17:51:59.509+00:00 | https://www.inaturalist.org/observations/208892791 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892791 | christoph_moning | 2024/02/23 1:50 PM | Observations | 4853004180 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892791 | 464902 | 208892791 | iNaturalist | 13:50:00-03:00 | wild | 474456003 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.24522 -35.55915) |
| 4852930960 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:14:34.329+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:15 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T14:00 | 54 | 54 | 2024-04-23T19:07:28.000+00:00 | 2024-05-20T17:14:34.329+00:00 | https://www.inaturalist.org/observations/208892795 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892795 | christoph_moning | 2024/02/23 2:00 PM | Observations | 4852930960 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892795 | 464902 | 208892795 | iNaturalist | 14:00:00-03:00 | wild | 474456010 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.24541 -35.5591) |
| 4599887305 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:55:39.641+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-03-24T13:36:27 | 4657 | SOUTH_AMERICA | Maule | 2024 | 3 | 22 | 2024-03-22T08:43:19 | 82 | 82 | 2024-03-24T15:01:12.000+00:00 | 2024-05-20T17:55:39.641+00:00 | https://www.inaturalist.org/observations/203733667 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | pmarinaraya | pmarinaraya | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | pmarinaraya | 203733667 | pmarinaraya | 2024-03-22 08:43:19 | Observations | 4599887305 | San Clemente, Maule, Chile | https://www.inaturalist.org/observations/203733667 | 464902 | 203733667 | iNaturalist | 08:43:19-03:00 | wild | 462846700 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.06166 -35.65635) |
| 4606732718 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:25.793+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-04-02T11:00:21 | NA | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 3 | 24 | 2024-03-24T18:27 | 84 | 84 | 2024-04-02T17:36:40.000+00:00 | 2024-05-20T17:51:25.793+00:00 | https://www.inaturalist.org/observations/205071387 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Juan Rodolfo Lillo Lobos | Juan Rodolfo Lillo Lobos | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Juan Rodolfo Lillo Lobos | 205071387 | jotalillo | 2024/03/24 6:27 PM | Observations | 4606732718 | Cachapoal, O’Higgins, Chile | https://www.inaturalist.org/observations/205071387 | 19347 | 205071387 | iNaturalist | 18:27:00-03:00 | wild | 465986117 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.38664 -34.34295) |
| 4855448905 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:17:40.941+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-05-02T14:44:41 | 8 | SOUTH_AMERICA | Coquimbo | 2024 | 4 | 12 | 2024-04-12T17:18 | 103 | 103 | 2024-05-04T21:24:07.000+00:00 | 2024-05-20T17:17:40.941+00:00 | https://www.inaturalist.org/observations/212782767 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | By.Ulises | Diego Almendras G. | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | By.Ulises | 212782767 | ulises_zc | 2024/04/12 5:18 PM | Observations | 4855448905 | Vicuña, Coquimbo, Chile | https://www.inaturalist.org/observations/212782767 | 464902 | 212782767 | iNaturalist | 17:18:00-04:00 | wild | 480935487 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.70775 -30.02961) |
| 4855224546 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | MX | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:19:02.101+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-05-07T03:21:49 | 8 | SOUTH_AMERICA | Coquimbo | 2024 | 4 | 27 | 2024-04-27T15:59 | 118 | 118 | 2024-05-07T14:46:48.000+00:00 | 2024-05-20T17:19:02.101+00:00 | https://www.inaturalist.org/observations/214121263 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Eduardo Fernández Reza | Diego Almendras G. | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Eduardo Fernández Reza | 214121263 | lalo46 | 2024/04/27 3:59 PM | Observations | 4855224546 | Varillar, Vicuña, Coquimbo, Chile | https://www.inaturalist.org/observations/214121263 | 464902 | 214121263 | iNaturalist | 15:59:00-04:00 | wild | 483638686 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.53335 -29.94897) |
| 4018351445 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:43:27.410+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2023-01-17T17:31:39 | 61 | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2023 | 1 | 17 | 2023-01-17T13:34 | 17 | 17 | 2023-02-01T21:51:16.000+00:00 | 2024-05-20T17:43:27.410+00:00 | https://www.inaturalist.org/observations/146770124 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | alcedo77 | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | alcedo77 | 146770124 | alcedo77 | 2023/01/17 1:34 PM | Observations | 4018351445 | Cachapoal, O’Higgins, Chile | https://www.inaturalist.org/observations/146770124 | 464902 | 146770124 | iNaturalist | 13:34:00-03:00 | wild | 327857303 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.56206 -34.03172) |
| 4028644003 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:43:35.647+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2023-01-30T19:26:03 | 8906 | SOUTH_AMERICA | Atacama | 2023 | 1 | 24 | 2023-01-24T11:43 | 24 | 24 | 2023-02-27T02:44:26.000+00:00 | 2024-05-20T17:43:35.647+00:00 | https://www.inaturalist.org/observations/147708057 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Nicolás Villaseca Merino | Diego Almendras G. | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Nicolás Villaseca Merino | 147708057 | niboldus | 2023/01/24 11:43 AM | Observations | 4028644003 | Huasco, Atacama, Chile | https://www.inaturalist.org/observations/147708057 | 464902 | 147708057 | iNaturalist | 11:43:00-03:00 | wild | 330720738 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.88678 -28.87634) |
| 4660665580 | Cyanoliseus patagonus (Vieillot, 1818) | cdc | 4fa7b334-ce0d-4e88-aaae-2e0c138d049e | e2e717bf-551a-4917-bdc9-4fa0f342c530 | 7182d304-b0a2-404b-baba-2086a325c221 | e2e717bf-551a-4917-bdc9-4fa0f342c530 | CL | DWC_ARCHIVE | 2024-04-15T22:36:22.136+00:00 | 2024-04-17T08:58:41.631+00:00 | 20 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | NA | NA | SOUTH_AMERICA | Atacama | 2023 | 1 | 1 | 2023-01-01 | 1 | 1 | NA | 2024-04-17T08:58:41.631+00:00 | NA | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | NA | obsr3519614 | NA | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | NA | OBS1594288898 | NA | NA | EBIRD | 4660665580 | NA | URN:catalog:CLO:EBIRD:OBS1594288898 | NA | OBS1594288898 | CLO | NA | NA | NA | LC | 15 | Burrowing Parakeet | avibase-1A7D8F6B | Vallenar | Panamericana Norte, Chañar, Atacama, CL (-29.15, -70.966) | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.9657 -29.14995) |
| 4754916566 | Cyanoliseus patagonus (Vieillot, 1818) | cdc | 4fa7b334-ce0d-4e88-aaae-2e0c138d049e | e2e717bf-551a-4917-bdc9-4fa0f342c530 | 7182d304-b0a2-404b-baba-2086a325c221 | e2e717bf-551a-4917-bdc9-4fa0f342c530 | CL | DWC_ARCHIVE | 2024-04-15T22:36:22.136+00:00 | 2024-04-17T08:58:56.126+00:00 | 20 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | NA | NA | SOUTH_AMERICA | Atacama | 2023 | 1 | 1 | 2023-01-01 | 1 | 1 | NA | 2024-04-17T08:58:56.126+00:00 | NA | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | NA | obsr3519619 | NA | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | NA | OBS1594289701 | NA | NA | EBIRD | 4754916566 | NA | URN:catalog:CLO:EBIRD:OBS1594289701 | NA | OBS1594289701 | CLO | NA | NA | NA | LC | 15 | Burrowing Parakeet | avibase-1A7D8F6B | Vallenar | Panamericana Norte, Chañar, Atacama, CL (-29.15, -70.966) | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-70.9657 -29.14995) |
| 4626086998 | Cyanoliseus patagonus (Vieillot, 1818) | cdc | 4fa7b334-ce0d-4e88-aaae-2e0c138d049e | e2e717bf-551a-4917-bdc9-4fa0f342c530 | 7182d304-b0a2-404b-baba-2086a325c221 | e2e717bf-551a-4917-bdc9-4fa0f342c530 | CL | DWC_ARCHIVE | 2024-04-15T22:36:22.136+00:00 | 2024-04-17T09:23:12.260+00:00 | 20 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | NA | NA | SOUTH_AMERICA | Maule | 2023 | 1 | 1 | 2023-01-01 | 1 | 1 | NA | 2024-04-17T09:23:12.260+00:00 | NA | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | NA | obsr168939 | NA | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | NA | OBS1594535558 | NA | NA | EBIRD | 4626086998 | NA | URN:catalog:CLO:EBIRD:OBS1594535558 | NA | OBS1594535558 | CLO | NA | NA | NA | LC | 15 | Burrowing Parakeet | avibase-1A7D8F6B | San Clemente | Ruta 115, San Clemente, Maule, CL (-35.75, -71.006) | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (-71.00556 -35.75028) |
es básicamente la misma que cp, la anterior, sólo que se
puede manipular espacialente y tiene una columna llamada
geometry. Esto nos permite manipular los datos como si cada
fila fuera un punto a ver en un mapa pues cada registro (fila) tiene
asociada una coordenada.
1.3.1 Distribución geográfica de registros de C.patagonus en GBIF para Chile
Lo primero es ver donde quedan estas coordenadas. Usaremos
ggplot2.
Pero, es posible poner los registros en un mapa de las comunas de Chile?
Para eso necesitamos un mapa de las comunas. Buscamos entre los shapefiles de la Biblioteca Nacional y lo usamos como mapa base.
shp = "comunas.shp"
if (!file.exists(shp)) {
url_com = "https://www.bcn.cl/obtienearchivo?id=repositorio/10221/10396/2/Comunas.zip"
print(paste("Descargando", shp, "de", url_com))
# library(curl)
com_tmp = tempfile()
com = curl::curl_download(url_com, com_tmp)
unzip(com)
}
comunas = read_sf("comunas.shp") |>
dplyr::select(Comuna, Provincia) |>
st_transform(crs = 32719) # es importante manejar esa info en coordenadas 'reales'
cp_sf2 <- cp_sf |>
st_transform(crs = 32719) # es importante manejar esa info en coordenadas 'reales'
# rm(cp_sf) # borramos mapa en latlon para ahorrar memoria
ggplot() + geom_sf(data = comunas, alpha = 0.1) + geom_sf(data = cp_sf2, pch = 4,
col = "purple") + theme_bw() + ggtitle("Registros de C. patagonus en GBIF") +
# ylim(st_bbox(cp_sf2)[2]-5e4,st_bbox(cp_sf2)[4]+5e4) +
ylim(st_bbox(cp_sf2)[2] + 1050000, st_bbox(cp_sf2)[4] - 550000) + xlim(st_bbox(cp_sf2)[1] -
250000, st_bbox(cp_sf2)[3] + 50000) # ajustar
podemos hacer un zoom limitando el x e y a
mostrar con ylim y xlim. Para eso usamos
st_bbox() que retorna la extensión del objeto geográfico.
Noten las diferencias entre los objetos.
## [1] "cp_sf:"## xmin ymin xmax ymax
## -73.83926 -40.77264 -70.06130 -23.64955## [1] "cp_sf2:"## xmin ymin xmax ymax
## 91543.14 5475202.65 401786.18 7383876.93Como veremos en el próximo, hay 2 núcleos principales (¿poblaciones?) y algunos puntos que representan, probablemente, errores de avistamiento. OjO: Debieramos removerlos antes del análisis.
1.3.2 Visualización interactiva
Podemos usar mapview para explorar los datos de forma interactiva,
usando la columna year, por ejemplo, para ver cómo se ha
muestreado a través de los años. Vamos a usar el parámetro
cex para ajustar el tamaño del marcador (punto) que nos
permite visualizar el número de registros por año.
Creamos primero una tabla (conteo) que resume el número
de avistamientos por localidad y se lo agregamos a una columna llamada
‘Número de registros’. Fíjate en el uso de group_by(),
mutate() y distinct(). Son funciones de
dplyr que en su conjunto agrupan por punto de muestreo,
luego crea (con mutate()) una columna donde almacena el
número de registros distintos.
conteo <- cp_sf2 |>
group_by(geometry) |>
dplyr::select(key, stateProvince, locality, day, month, year, recordedBy) |>
mutate(`Número de registros` = n()) |>
distinct() |>
st_as_sf()Ahora, la nueva table conteo tiene el mismo numero de
filas que cp_sf2, lo que nos indica que hay realmente un
registro por fila.
Con esto vemos solo las columnas indicadas por select()
Vamos a
filas = 15 # vamos a muestrear n numero de filas para mostrar.
conteo[sample(1:nrow(conteo), size = filas), ] |>
kbl() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) |>
scroll_box(width = "100%", height = "400px")| key | stateProvince | locality | day | month | year | recordedBy | geometry | Número de registros |
|---|---|---|---|---|---|---|---|---|
| 4759778256 | Libertador General Bernardo O’Higgins | La Leonera | 10 | 1 | 2023 | obsr1387238 | POINT (354459.8 6232913) | 27 |
| 3469004639 | Coquimbo | NA | 2 | 2 | 2022 | John G. Phillips | POINT (351665.2 6687308) | 10 |
| 4662895892 | Libertador General Bernardo O’Higgins | H-255, Machalí, O’Higgins, CL (-34,229, -70,658) | 17 | 9 | 2023 | obsr190467 | POINT (347292.7 6211252) | 2 |
| 4266088644 | Coquimbo | Tulahuén | 19 | 3 | 2022 | obsr527475 | POINT (331079.1 6572941) | 3 |
| 2706232666 | Libertador General Bernardo O’Higgins | Las leñas loma hermosa | 8 | 6 | 2019 | obsr790870 | POINT (381498.4 6195493) | 19 |
| 3259296244 | Coquimbo | Gualliguaica–Puclaro | 17 | 10 | 2020 | obsr198533 | POINT (325244.4 6677937) | 46 |
| 4204978090 | Libertador General Bernardo O’Higgins | RN Río de Los Cipreses–Mirador Sendero Los Tricahues | 30 | 12 | 2022 | obsr2012046 | POINT (366827.1 6203956) | 25 |
| 4321855760 | Maule | Ruta 115, Colbún, Maule, CL (-35,709, -71,104) | 3 | 3 | 2022 | obsr264969 | POINT (309621 6046287) | 2 |
| 4819197682 | Coquimbo | D-165, La Serena, Coquimbo, CL (-29,799, -71,27) | 5 | 12 | 2023 | obsr923919 | POINT (280609.4 6701344) | 1 |
| 586627365 | Libertador General Bernardo O’Higgins | condominio el polo, machalí | 18 | 9 | 2011 | obsr190467 | POINT (345953.6 6216045) | 3 |
| 1367473265 | Maule | Valle de los Cóndores | 9 | 5 | 2015 | obsr307076 | POINT (357711.5 6019929) | 5 |
| 2661737154 | Libertador General Bernardo O’Higgins | RN Río de Los Cipreses | 12 | 1 | 2019 | obsr602057 | POINT (369737.3 6199966) | 113 |
| 2763657248 | Región Metropolitana de Santiago | El Escorial–Huelquén | 17 | 11 | 2019 | obsr1485647 | POINT (351882.5 6252639) | 2 |
| 4402731450 | Región del Libertador General Bernardo O’Higgins | NA | 19 | 5 | 2021 | NA | POINT (371498.8 6196501) | 57 |
| 4810374296 | Maule | Los Rabones–loreras | 23 | 4 | 2023 | obsr3313232 | POINT (290501.4 6031572) | 9 |
1.3.3 Ploteo interactivo con MapView
podemos ver los datos en un contexto geográfico web, y nos permite
ajustar el tamaño de los puntos según valor de la columna de los números
de registros, separados por la categoría de año (columna
year).
1.4 Nicho climático
Vamos a buscar cuáles son las condiciones climáticas en que están estos registros para generar asi, una definición (gruesa) del nicho climático para Tricahue.
Usaremos los datos de Worldclim, que se encuentran documentados aquí. Sólo usaremos las variables bioclimáticas, en este ejemplo.
- Ojo: La función
getData(), de la libreríarasterpermite descargar directamente desde worldclim los datos bioclimáticos con el parámetro ‘var’. Así,getData('worldclim', var='bio', res=10)o biengetData('CMIP5', var='tmin', res=10, rcp=85, model='AC', year=70)nos permite descargar los datos bioclim[aticos a una resolución mas gruesa, o bien la temperatura mínima para la proyección de cambio climático futuro (CMIP5) del modelo ‘AC’ para el año 2070, respectivamente !
# Bioclim <- worldclim_country('Chile', var='bio', res=0.5, path=getwd()) |>
# terra::crop(cp_sf)
Bioclim <- worldclim_country("Chile", var = c("bio"), res = 0.5, path = getwd()) |>
terra::crop(st_transform(cp_sf2, "EPSG:4326")) # reproyectamos 'al vuelo', pues bioclim viene en epsg:4326
names(Bioclim) <- sapply(strsplit(names(Bioclim), split = "30s_", fixed = TRUE),
function(x) (x[2])) # renombra columnas
plot(Bioclim)
1.4.1 Clima en registro de C. patagonus
Para extraer los datos bioclimáticos en las coordenadas geográficas, debemos consultar los pixeles de los rasters bioclimáticos donde existen ocurrencias en nuestra bas de datos.
Ejemplo de consulta de valores de raster en
coordenadas
La función a usar está en la librería raster y se llama
extract().
Con eso generamos una tabla con las variables climáticas en cada una de las coordenadas en que tenemos registros.
Vemos la tabla con los datos bioclimáticos para cada registro. (filas = primero 15 registros)
Clima |>
slice(1:filas) |>
kable() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) |>
scroll_box(width = "100%", height = "400px")| ID | bio_1 | bio_2 | bio_3 | bio_4 | bio_5 | bio_6 | bio_7 | bio_8 | bio_9 | bio_10 | bio_11 | bio_12 | bio_13 | bio_14 | bio_15 | bio_16 | bio_17 | bio_18 | bio_19 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.145833 | 13.791667 | 49.96981 | 515.1587 | 26.1 | -1.5 | 27.6 | 4.666667 | 16.63333 | 16.63333 | 3.866667 | 839 | 180 | 12 | 86.68415 | 477 | 42 | 42 | 453 |
| 2 | 12.625000 | 12.883333 | 48.98606 | 490.2202 | 28.0 | 1.7 | 26.3 | 7.416666 | 18.88333 | 18.88333 | 6.716667 | 917 | 196 | 12 | 87.47552 | 523 | 41 | 41 | 487 |
| 3 | 15.454166 | 12.941667 | 49.58493 | 478.5464 | 30.3 | 4.2 | 26.1 | 10.300000 | 20.88333 | 21.35000 | 9.666667 | 717 | 180 | 3 | 101.38228 | 453 | 15 | 20 | 428 |
| 4 | 14.825000 | 9.033334 | 54.74748 | 282.3561 | 23.3 | 6.8 | 16.5 | 11.466667 | 17.51667 | 18.41667 | 11.466667 | 61 | 19 | 0 | 112.24976 | 47 | 0 | 0 | 47 |
| 5 | 17.183332 | 12.550000 | 48.26923 | 492.0474 | 31.9 | 5.9 | 26.0 | 11.750000 | 22.73333 | 23.20000 | 11.216666 | 648 | 172 | 1 | 111.24863 | 445 | 8 | 11 | 397 |
| 6 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 7 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 8 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 9 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 10 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 11 | 12.883333 | 12.983334 | 49.74457 | 478.1800 | 28.2 | 2.1 | 26.1 | 7.800000 | 19.01667 | 19.01667 | 7.150000 | 927 | 205 | 10 | 90.69820 | 541 | 35 | 35 | 500 |
| 12 | 7.729166 | 12.025001 | 50.10417 | 448.3579 | 21.5 | -2.5 | 24.0 | 2.316667 | 13.40000 | 13.40000 | 2.316667 | 971 | 213 | 11 | 93.93735 | 569 | 39 | 39 | 569 |
| 13 | 12.683333 | 13.533334 | 51.45754 | 475.7403 | 27.5 | 1.2 | 26.3 | 7.600000 | 18.06667 | 18.56667 | 6.883333 | 747 | 173 | 4 | 97.46371 | 463 | 19 | 23 | 432 |
| 14 | 14.708333 | 11.033334 | 57.46528 | 313.9110 | 24.6 | 5.4 | 19.2 | 10.933333 | 18.65000 | 18.65000 | 10.933333 | 79 | 28 | 0 | 116.93127 | 60 | 0 | 0 | 60 |
| 15 | 13.729167 | 11.525000 | 58.50254 | 310.6917 | 23.9 | 4.2 | 19.7 | 10.000000 | 16.88333 | 17.61667 | 10.000000 | 52 | 16 | 0 | 109.42775 | 38 | 0 | 0 | 38 |
Ahora, a qué corresponde bio_1, bio_2, etc…??
Veamos, por una parte, qué son estas variables:
Por otra parte, la inspección de la tabla muestra que sólo tiene los valores bioclimáticos. Necesitamos, ciertamente, asociar los registros y probablemente otros datos climáticos como temperatura, precipitaciones, radiación, por ejemplo.
Pero miremos primero cómo se relacionan los valores bioclimáticos recuperados para C. patagonus.
1.4.2 Selección de vaiables (bioclimáticas)
Sabemos que las variables bioclimáticas son variables derivadas de la variables de clima. Por lo tanto, han de tener fuertes correlaciones entre ellas. La pregunta es cuales elegir y minimizar asi, esta correlación espuria que sólo incrementará el ajuste del modelo de forma artificial.
- Ver aqui la descripción de las variable bioclimáticas de worldclim.
Buscamos comprender cuales variables bioclimáticas son significativamente relevantes para describir, y predecir, la distribución de la especies. Esto significa que debemos poder tener una buena idea de la correlación entre variables bioclimáticas para no usar variables que representan, en realidad, un mismo aspecto del clima a la hora de generar una predicción.
veamos la correlación entre la variables bioclimáticas donde hay
C. patagonus. Fíjense que se han agrupados las filas y columnas
con correlaciones similares para facilitar la interpretación. Eso puede
hacerse con la librería ggcorrplot y su parámetro
hc.order.
# install.packages('ggcorrplot') library(ggcorrplot)
p_load(ggcorrplot)
corr <- cor(Clima[, -1], use = "pairwise") # ojo que removemos la primera columna que es el 'ID'
ggcorrplot::ggcorrplot(corr, method = "circle", pch = 2, show.diag = FALSE, type = "upper",
ggtheme = theme_minimal(), hc.order = TRUE)
Seleccionamos entonces algunas variables de Bioclim que muestren baja correlación (no negativa!).
yo veo las variables :
- BIO?? = XXX
- BIO?? = XXX
- BIO?? = XXX
- BIO?? = XXX
- BIO?? = XXX
(son todas de temperatura?…. mmmh sus. Creo que será importante considerar directamente las variables climáticas.)
## ejemplo con algunas variables... que no son las correctas, pero muestra el
## procedimiento
Var_ambientales <- Clima |>
dplyr::select(bio_1, bio_3, bio_5, bio_9, bio_10)
rm(Bioclim, Clima) # borramos para aliviar la memoria del compu!Unimos los datos de ocurrencia de C. patagonus con los datos bioclimáticos para tener todo en una sola tabla que tendrá las coordenadas geográficas de las ocurrencias en GBIF para Chile.
cp_sf2 <- cp_sf2 |>
bind_cols(Var_ambientales)
# print(cp2[1:3,])
cp_sf2 |>
slice(1:filas) |>
kable() |>
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) |>
scroll_box(width = "100%", height = "400px")| key | scientificName | issues | datasetKey | publishingOrgKey | installationKey | hostingOrganizationKey | publishingCountry | protocol | lastCrawled | lastParsed | crawlId | basisOfRecord | occurrenceStatus | taxonKey | kingdomKey | phylumKey | classKey | orderKey | familyKey | genusKey | speciesKey | acceptedTaxonKey | acceptedScientificName | kingdom | phylum | order | family | genus | species | genericName | specificEpithet | infraspecificEpithet | taxonRank | taxonomicStatus | dateIdentified | coordinateUncertaintyInMeters | continent | stateProvince | year | month | day | eventDate | startDayOfYear | endDayOfYear | modified | lastInterpreted | references | license | isSequenced | isInCluster | datasetName | recordedBy | identifiedBy | geodeticDatum | class | countryCode | gbifRegion | country | publishedByGbifRegion | rightsHolder | identifier | http://unknown.org/nick | verbatimEventDate | collectionCode | gbifID | verbatimLocality | occurrenceID | taxonID | catalogNumber | institutionCode | eventTime | http://unknown.org/captive | identificationID | iucnRedListCategory | individualCount | vernacularName | taxonConceptID | county | locality | distanceFromCentroidInMeters | lifeStage | occurrenceRemarks | name | preparations | nomenclaturalCode | dynamicProperties | fieldNotes | behavior | verbatimElevation | higherClassification | identificationRemarks | informationWithheld | projectId | establishmentMeans | degreeOfEstablishment | eventID | institutionID | verbatimSRS | verbatimCoordinateSystem | language | type | originalNameUsage | ownerInstitutionCode | bibliographicCitation | reproductiveCondition | collectionID | verbatimTaxonRank | samplingProtocol | georeferencedBy | accessRights | georeferenceSources | locationRemarks | coordinatePrecision | elevation | elevationAccuracy | higherGeography | organismQuantity | organismQuantityType | georeferencedDate | acceptedNameUsage | georeferenceProtocol | namePublishedInYear | associatedReferences | municipality | eventRemarks | taxonRemarks | acceptedNameUsageID | networkKeys | sex | institutionKey | collectionKey | recordNumber | datasetID | georeferenceRemarks | disposition | previousIdentifications | otherCatalogNumbers | georeferenceVerificationStatus | identificationReferences | fieldNumber | higherGeographyID | geometry | bio_1 | bio_3 | bio_5 | bio_9 | bio_10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4512170484 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:13:20.631+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-01-11T02:56:57 | 15 | SOUTH_AMERICA | Maule | 2024 | 1 | 9 | 2024-01-09T18:49 | 9 | 9 | 2024-01-11T14:26:49.000+00:00 | 2024-05-20T17:13:20.631+00:00 | https://www.inaturalist.org/observations/196322807 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | rodrigo_contreras-aguilera | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | rodrigo_contreras-aguilera | 196322807 | rodrigo_contreras-aguilera | 2024/01/09 6:49 PM | Observations | 4512170484 | Talca, Maule, Chile | https://www.inaturalist.org/observations/196322807 | 464902 | 196322807 | iNaturalist | 18:49:00-03:00 | wild | 442210250 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (341757.3 6033959) | 10.145833 | 49.96981 | 26.1 | 16.63333 | 16.63333 |
| 4512327452 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:19.115+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-01-13T02:56:27 | 303 | SOUTH_AMERICA | Maule | 2024 | 1 | 12 | 2024-01-12T18:41:28 | 12 | 12 | 2024-01-13T13:26:36.000+00:00 | 2024-05-20T17:54:19.115+00:00 | https://www.inaturalist.org/observations/196476031 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | humesca_scs | humesca_scs | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | humesca_scs | 196476031 | humesca_scs | 2024-01-12 18:41:28 | Observations | 4512327452 | San Clemente, Maule, Chile | https://www.inaturalist.org/observations/196476031 | 19347 | 196476031 | iNaturalist | 18:41:28-03:00 | wild | 442700327 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (311931.2 6046758) | 12.625000 | 48.98606 | 28.0 | 18.88333 | 18.88333 |
| 4512314177 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:14:17.972+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-01-15T11:54:20 | 164 | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 1 | 13 | 2024-01-13T10:17:23 | 13 | 13 | 2024-01-24T19:49:13.000+00:00 | 2024-05-20T17:14:17.972+00:00 | https://www.inaturalist.org/observations/196749297 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Diego Brito | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Diego Brito | 196749297 | dj_brito | 2024-01-13 10:17:23 | Observations | 4512314177 | Requínoa, O’Higgins, Chile | https://www.inaturalist.org/observations/196749297 | 464902 | 196749297 | iNaturalist | 10:17:23-03:00 | wild | 443429889 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (354541.4 6205723) | 15.454166 | 49.58493 | 30.3 | 20.88333 | 21.35000 |
| 4522832363 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:01.269+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-02-13T16:31:21 | 244 | SOUTH_AMERICA | Coquimbo | 2024 | 1 | 26 | 2024-01-26T10:09 | 26 | 26 | 2024-02-13T17:22:41.000+00:00 | 2024-05-20T17:51:01.269+00:00 | https://www.inaturalist.org/observations/199196753 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Matt and Kaysea Bruce | Diego Brito | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Matt and Kaysea Bruce | 199196753 | kaysea10 | 2024/01/26 10:09 AM | Observations | 4522832363 | Elqui Province, Coquimbo, Chile | https://www.inaturalist.org/observations/199196753 | 464902 | 199196753 | iNaturalist | 10:09:00-03:00 | wild | 451100192 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (298333.9 6700204) | 14.825000 | 54.74748 | 23.3 | 17.51667 | 18.41667 |
| 4525219959 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:12:28.710+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-02-18T03:38:06 | NA | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 2 | 15 | 2024-02-15T18:42:38 | 46 | 46 | 2024-02-19T11:11:44.000+00:00 | 2024-05-20T17:12:28.710+00:00 | https://www.inaturalist.org/observations/199635456 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Manuel Palacios | Manuel Palacios | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Manuel Palacios | 199635456 | mpalacios | 2024-02-15 18:42:38 | Observations | 4525219959 | Requínoa, O’Higgins, Chile | https://www.inaturalist.org/observations/199635456 | 19347 | 199635456 | iNaturalist | 18:42:38-03:00 | wild | 452332374 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (331152.6 6208338) | 17.183332 | 48.26923 | 31.9 | 22.73333 | 23.20000 |
| 4597027436 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:16:35.841+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-03-13T14:34:28 | NA | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T15:33 | 54 | 54 | 2024-03-15T15:29:24.000+00:00 | 2024-05-20T17:16:35.841+00:00 | https://www.inaturalist.org/observations/202278588 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 202278588 | christoph_moning | 2024/02/23 3:33 PM | Observations | 4597027436 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/202278588 | 464902 | 202278588 | iNaturalist | 15:33:00-03:00 | wild | 459406351 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296465.1 6062632) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4853098317 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:47.084+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 4 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:45 | 54 | 54 | 2024-04-23T19:07:06.000+00:00 | 2024-05-20T17:54:47.084+00:00 | https://www.inaturalist.org/observations/208892784 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892784 | christoph_moning | 2024/02/23 1:45 PM | Observations | 4853098317 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892784 | 464902 | 208892784 | iNaturalist | 13:45:00-03:00 | wild | 474455995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296486.8 6062621) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4852932624 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:56:00.629+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:48 | 54 | 54 | 2024-04-23T19:07:03.000+00:00 | 2024-05-20T17:56:00.629+00:00 | https://www.inaturalist.org/observations/208892789 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892789 | christoph_moning | 2024/02/23 1:48 PM | Observations | 4852932624 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892789 | 464902 | 208892789 | iNaturalist | 13:48:00-03:00 | wild | 474456000 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296500.7 6062622) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4851810375 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:54:54.771+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:13 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:50 | 54 | 54 | 2024-04-23T19:07:35.000+00:00 | 2024-05-20T17:54:54.771+00:00 | https://www.inaturalist.org/observations/208892790 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892790 | christoph_moning | 2024/02/23 1:50 PM | Observations | 4851810375 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892790 | 464902 | 208892790 | iNaturalist | 13:50:00-03:00 | wild | 474456001 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296490.5 6062626) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4853004180 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:59.509+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:14 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T13:50 | 54 | 54 | 2024-04-23T19:05:19.000+00:00 | 2024-05-20T17:51:59.509+00:00 | https://www.inaturalist.org/observations/208892791 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892791 | christoph_moning | 2024/02/23 1:50 PM | Observations | 4853004180 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892791 | 464902 | 208892791 | iNaturalist | 13:50:00-03:00 | wild | 474456003 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296506.1 6062627) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4852930960 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:14:34.329+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-04-23T14:14:15 | 2 | SOUTH_AMERICA | Maule | 2024 | 2 | 23 | 2024-02-23T14:00 | 54 | 54 | 2024-04-23T19:07:28.000+00:00 | 2024-05-20T17:14:34.329+00:00 | https://www.inaturalist.org/observations/208892795 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Christoph Moning | Christoph Moning | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Christoph Moning | 208892795 | christoph_moning | 2024/02/23 2:00 PM | Observations | 4852930960 | Talca Province, Maule, Chile | https://www.inaturalist.org/observations/208892795 | 464902 | 208892795 | iNaturalist | 14:00:00-03:00 | wild | 474456010 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (296489 6062632) | 12.883333 | 49.74457 | 28.2 | 19.01667 | 19.01667 |
| 4599887305 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:55:39.641+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-03-24T13:36:27 | 4657 | SOUTH_AMERICA | Maule | 2024 | 3 | 22 | 2024-03-22T08:43:19 | 82 | 82 | 2024-03-24T15:01:12.000+00:00 | 2024-05-20T17:55:39.641+00:00 | https://www.inaturalist.org/observations/203733667 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | pmarinaraya | pmarinaraya | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | pmarinaraya | 203733667 | pmarinaraya | 2024-03-22 08:43:19 | Observations | 4599887305 | San Clemente, Maule, Chile | https://www.inaturalist.org/observations/203733667 | 464902 | 203733667 | iNaturalist | 08:43:19-03:00 | wild | 462846700 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (313371.5 6052208) | 7.729166 | 50.10417 | 21.5 | 13.40000 | 13.40000 |
| 4606732718 | Cyanoliseus patagonus (Vieillot, 1818) | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | US | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:51:25.793+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 2479529 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 2479529 | Cyanoliseus patagonus (Vieillot, 1818) | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | NA | SPECIES | ACCEPTED | 2024-04-02T11:00:21 | NA | SOUTH_AMERICA | Libertador General Bernardo O’Higgins | 2024 | 3 | 24 | 2024-03-24T18:27 | 84 | 84 | 2024-04-02T17:36:40.000+00:00 | 2024-05-20T17:51:25.793+00:00 | https://www.inaturalist.org/observations/205071387 | http://creativecommons.org/licenses/by/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Juan Rodolfo Lillo Lobos | Juan Rodolfo Lillo Lobos | WGS84 | Aves | CL | LATIN_AMERICA | Chile | NORTH_AMERICA | Juan Rodolfo Lillo Lobos | 205071387 | jotalillo | 2024/03/24 6:27 PM | Observations | 4606732718 | Cachapoal, O’Higgins, Chile | https://www.inaturalist.org/observations/205071387 | 19347 | 205071387 | iNaturalist | 18:27:00-03:00 | wild | 465986117 | LC | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus (Vieillot, 1818) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (372459 6198946) | 12.683333 | 51.45754 | 27.5 | 18.06667 | 18.56667 |
| 4855448905 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | CL | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:17:40.941+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-05-02T14:44:41 | 8 | SOUTH_AMERICA | Coquimbo | 2024 | 4 | 12 | 2024-04-12T17:18 | 103 | 103 | 2024-05-04T21:24:07.000+00:00 | 2024-05-20T17:17:40.941+00:00 | https://www.inaturalist.org/observations/212782767 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | By.Ulises | Diego Almendras G. | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | By.Ulises | 212782767 | ulises_zc | 2024/04/12 5:18 PM | Observations | 4855448905 | Vicuña, Coquimbo, Chile | https://www.inaturalist.org/observations/212782767 | 464902 | 212782767 | iNaturalist | 17:18:00-04:00 | wild | 480935487 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (335328.3 6676706) | 14.708333 | 57.46528 | 24.6 | 18.65000 | 18.65000 |
| 4855224546 | Cyanoliseus patagonus bloxami Olson, 1995 | cdc,cdround | 50c9509d-22c7-4a22-a47d-8c48425ef4a7 | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | 997448a8-f762-11e1-a439-00145eb45e9a | 28eb1a3f-1c15-4a95-931a-4af90ecb574d | MX | DWC_ARCHIVE | 2024-05-20T03:40:30.646+00:00 | 2024-05-20T17:19:02.101+00:00 | 459 | HUMAN_OBSERVATION | PRESENT | 6170524 | 1 | 44 | 212 | 1445 | 9340 | 2479528 | 2479529 | 6170524 | Cyanoliseus patagonus bloxami Olson, 1995 | Animalia | Chordata | Psittaciformes | Psittacidae | Cyanoliseus | Cyanoliseus patagonus | Cyanoliseus | patagonus | bloxami | SUBSPECIES | ACCEPTED | 2024-05-07T03:21:49 | 8 | SOUTH_AMERICA | Coquimbo | 2024 | 4 | 27 | 2024-04-27T15:59 | 118 | 118 | 2024-05-07T14:46:48.000+00:00 | 2024-05-20T17:19:02.101+00:00 | https://www.inaturalist.org/observations/214121263 | http://creativecommons.org/licenses/by-nc/4.0/legalcode | FALSE | FALSE | iNaturalist research-grade observations | Eduardo Fernández Reza | Diego Almendras G. | WGS84 | Aves | CL | LATIN_AMERICA | Chile | LATIN_AMERICA | Eduardo Fernández Reza | 214121263 | lalo46 | 2024/04/27 3:59 PM | Observations | 4855224546 | Varillar, Vicuña, Coquimbo, Chile | https://www.inaturalist.org/observations/214121263 | 464902 | 214121263 | iNaturalist | 15:59:00-04:00 | wild | 483638686 | NA | NA | NA | NA | NA | NA | NA | NA | NA | Cyanoliseus patagonus bloxami Olson, 1995 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NULL | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | POINT (352027.7 6685881) | 13.729167 | 58.50254 | 23.9 | 16.88333 | 17.61667 |
Ahora contamos con un archivo con todos los datos de ocurrencia y las variables climáticas seleccionadas. Podemos hacer el análisis.
2 Modelo de distribución de especies
2.1 GLM
2.2 Random Forest
2.4 Reporte
Con estos ejercicios iremos haciendo un reporte, que será entregado el 18 de nunio 2024.
2.4.1 Descripción de datos y análisis preliminar
2.4.2 Mapeo y representación gráfica
- Haz un mapa de la distribución de tu C. patagus para Chile
- ¿En cuántas Regiones encontramos a esta especie?
- Remueve los “outliers”. ¿En cuales comunas de Chile está ahora?
2.4.3 Análisis de variables independientes
- Construye una base de datos (tabla), con los valores de
temperatura, pp, radiación y variables
bioclimáticas donde ocurre tu C.patagus en Chile.
- Elige las variables mas idoneas para modelar el nicho de C. patagus. Justifica tu elección en términos de la biología de la especie.
- Describe estadisticamente el espacio bioclimático en que ocurre tu especie de preferencia
- Rangos de T y PP, promedio, moda, desviaciones…
- Separa los puntos de ocurrencia en 2 sets que representen las poblaciones disjuntas de la especie.
- Vuelve a a hacer 3 y 4
2.4.4 Análisis de distribución
- General 2 modelos de distribución para cada grupo de ocurrencias. Esto es, usa dos modelos estadísticos de tu preferencia que expliquen la distribución de C. patagus en su conjunto y los 2 grupos de ocurrencia seleccionado en 5
- ¿Cuál(es) es(son) la(s) variable(s) independiente(s) que mejor se asocian con la presencia ?
- Construye la matriz de confusión para los 3 grupos (el total, las ocurrencias del norte y las del sur)
2.4.5 Predicción
Indica cual es la predicción para la distribución de C. patagus
Discute tus resultados desde las siguientes perspectivas:
- Técnicas la construcción del modelo elegido
- Biológica y de conservación de tu especie de preferencia.