R for Data Science
Ch5: Data Transformation
Import data
flights## # A tibble: 336,776 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 1 517 515 2 830 819
## 2 2013 1 1 533 529 4 850 830
## 3 2013 1 1 542 540 2 923 850
## 4 2013 1 1 544 545 -1 1004 1022
## 5 2013 1 1 554 600 -6 812 837
## 6 2013 1 1 554 558 -4 740 728
## 7 2013 1 1 555 600 -5 913 854
## 8 2013 1 1 557 600 -3 709 723
## 9 2013 1 1 557 600 -3 838 846
## 10 2013 1 1 558 600 -2 753 745
## # ℹ 336,766 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tailnum <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>Filter rows
jan1 <- filter(flights, month == 1, day == 1)filter(flights, month == 1, day == 1)## # A tibble: 842 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 1 517 515 2 830 819
## 2 2013 1 1 533 529 4 850 830
## 3 2013 1 1 542 540 2 923 850
## 4 2013 1 1 544 545 -1 1004 1022
## 5 2013 1 1 554 600 -6 812 837
## 6 2013 1 1 554 558 -4 740 728
## 7 2013 1 1 555 600 -5 913 854
## 8 2013 1 1 557 600 -3 709 723
## 9 2013 1 1 557 600 -3 838 846
## 10 2013 1 1 558 600 -2 753 745
## # ℹ 832 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tailnum <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>Arrange rows
arrange(flights, year, month, day)## # A tibble: 336,776 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 1 517 515 2 830 819
## 2 2013 1 1 533 529 4 850 830
## 3 2013 1 1 542 540 2 923 850
## 4 2013 1 1 544 545 -1 1004 1022
## 5 2013 1 1 554 600 -6 812 837
## 6 2013 1 1 554 558 -4 740 728
## 7 2013 1 1 555 600 -5 913 854
## 8 2013 1 1 557 600 -3 709 723
## 9 2013 1 1 557 600 -3 838 846
## 10 2013 1 1 558 600 -2 753 745
## # ℹ 336,766 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tailnum <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>arrange(flights, desc(dep_delay))## # A tibble: 336,776 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 9 641 900 1301 1242 1530
## 2 2013 6 15 1432 1935 1137 1607 2120
## 3 2013 1 10 1121 1635 1126 1239 1810
## 4 2013 9 20 1139 1845 1014 1457 2210
## 5 2013 7 22 845 1600 1005 1044 1815
## 6 2013 4 10 1100 1900 960 1342 2211
## 7 2013 3 17 2321 810 911 135 1020
## 8 2013 6 27 959 1900 899 1236 2226
## 9 2013 7 22 2257 759 898 121 1026
## 10 2013 12 5 756 1700 896 1058 2020
## # ℹ 336,766 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tailnum <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>Select colums
select(flights, year, month, day)## # A tibble: 336,776 × 3
## year month day
## <int> <int> <int>
## 1 2013 1 1
## 2 2013 1 1
## 3 2013 1 1
## 4 2013 1 1
## 5 2013 1 1
## 6 2013 1 1
## 7 2013 1 1
## 8 2013 1 1
## 9 2013 1 1
## 10 2013 1 1
## # ℹ 336,766 more rowsselect(flights, year:day)## # A tibble: 336,776 × 3
## year month day
## <int> <int> <int>
## 1 2013 1 1
## 2 2013 1 1
## 3 2013 1 1
## 4 2013 1 1
## 5 2013 1 1
## 6 2013 1 1
## 7 2013 1 1
## 8 2013 1 1
## 9 2013 1 1
## 10 2013 1 1
## # ℹ 336,766 more rowsselect(flights, -(year:day))## # A tibble: 336,776 × 16
## dep_time sched_dep_time dep_delay arr_time sched_arr_time arr_delay carrier
## <int> <int> <dbl> <int> <int> <dbl> <chr>
## 1 517 515 2 830 819 11 UA
## 2 533 529 4 850 830 20 UA
## 3 542 540 2 923 850 33 AA
## 4 544 545 -1 1004 1022 -18 B6
## 5 554 600 -6 812 837 -25 DL
## 6 554 558 -4 740 728 12 UA
## 7 555 600 -5 913 854 19 B6
## 8 557 600 -3 709 723 -14 EV
## 9 557 600 -3 838 846 -8 B6
## 10 558 600 -2 753 745 8 AA
## # ℹ 336,766 more rows
## # ℹ 9 more variables: flight <int>, tailnum <chr>, origin <chr>, dest <chr>,
## # air_time <dbl>, distance <dbl>, hour <dbl>, minute <dbl>, time_hour <dttm>rename(flights, tail_num = tailnum)## # A tibble: 336,776 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 1 517 515 2 830 819
## 2 2013 1 1 533 529 4 850 830
## 3 2013 1 1 542 540 2 923 850
## 4 2013 1 1 544 545 -1 1004 1022
## 5 2013 1 1 554 600 -6 812 837
## 6 2013 1 1 554 558 -4 740 728
## 7 2013 1 1 555 600 -5 913 854
## 8 2013 1 1 557 600 -3 709 723
## 9 2013 1 1 557 600 -3 838 846
## 10 2013 1 1 558 600 -2 753 745
## # ℹ 336,766 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tail_num <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>select(flights, time_hour, air_time, everything())## # A tibble: 336,776 × 19
## time_hour air_time year month day dep_time sched_dep_time
## <dttm> <dbl> <int> <int> <int> <int> <int>
## 1 2013-01-01 05:00:00 227 2013 1 1 517 515
## 2 2013-01-01 05:00:00 227 2013 1 1 533 529
## 3 2013-01-01 05:00:00 160 2013 1 1 542 540
## 4 2013-01-01 05:00:00 183 2013 1 1 544 545
## 5 2013-01-01 06:00:00 116 2013 1 1 554 600
## 6 2013-01-01 05:00:00 150 2013 1 1 554 558
## 7 2013-01-01 06:00:00 158 2013 1 1 555 600
## 8 2013-01-01 06:00:00 53 2013 1 1 557 600
## 9 2013-01-01 06:00:00 140 2013 1 1 557 600
## 10 2013-01-01 06:00:00 138 2013 1 1 558 600
## # ℹ 336,766 more rows
## # ℹ 12 more variables: dep_delay <dbl>, arr_time <int>, sched_arr_time <int>,
## # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>, origin <chr>,
## # dest <chr>, distance <dbl>, hour <dbl>, minute <dbl>Add colums
flights_sml <- select(flights,
year:day,
ends_with("delay"),
distance,
air_time
)
mutate(flights_sml,
gain = dep_delay - arr_delay,
speed = distance / air_time * 60
)## # A tibble: 336,776 × 9
## year month day dep_delay arr_delay distance air_time gain speed
## <int> <int> <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 2013 1 1 2 11 1400 227 -9 370.
## 2 2013 1 1 4 20 1416 227 -16 374.
## 3 2013 1 1 2 33 1089 160 -31 408.
## 4 2013 1 1 -1 -18 1576 183 17 517.
## 5 2013 1 1 -6 -25 762 116 19 394.
## 6 2013 1 1 -4 12 719 150 -16 288.
## 7 2013 1 1 -5 19 1065 158 -24 404.
## 8 2013 1 1 -3 -14 229 53 11 259.
## 9 2013 1 1 -3 -8 944 140 5 405.
## 10 2013 1 1 -2 8 733 138 -10 319.
## # ℹ 336,766 more rowsmutate(flights_sml,
gain = dep_delay - arr_delay,
hours = air_time / 60,
gain_per_hour = gain / hours
)## # A tibble: 336,776 × 10
## year month day dep_delay arr_delay distance air_time gain hours
## <int> <int> <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 2013 1 1 2 11 1400 227 -9 3.78
## 2 2013 1 1 4 20 1416 227 -16 3.78
## 3 2013 1 1 2 33 1089 160 -31 2.67
## 4 2013 1 1 -1 -18 1576 183 17 3.05
## 5 2013 1 1 -6 -25 762 116 19 1.93
## 6 2013 1 1 -4 12 719 150 -16 2.5
## 7 2013 1 1 -5 19 1065 158 -24 2.63
## 8 2013 1 1 -3 -14 229 53 11 0.883
## 9 2013 1 1 -3 -8 944 140 5 2.33
## 10 2013 1 1 -2 8 733 138 -10 2.3
## # ℹ 336,766 more rows
## # ℹ 1 more variable: gain_per_hour <dbl>transmute(flights,
dep_time,
hour = dep_time %/% 100,
minute = dep_time %% 100
)## # A tibble: 336,776 × 3
## dep_time hour minute
## <int> <dbl> <dbl>
## 1 517 5 17
## 2 533 5 33
## 3 542 5 42
## 4 544 5 44
## 5 554 5 54
## 6 554 5 54
## 7 555 5 55
## 8 557 5 57
## 9 557 5 57
## 10 558 5 58
## # ℹ 336,766 more rows(x <- 1:10)## [1] 1 2 3 4 5 6 7 8 9 10x## [1] 1 2 3 4 5 6 7 8 9 10cumsum(x)## [1] 1 3 6 10 15 21 28 36 45 55cummean(x)## [1] 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5y <- c(1, 2, 2, NA, 3, 4)
min_rank(y)## [1] 1 2 2 NA 4 5min_rank(desc(y))## [1] 5 3 3 NA 2 1Summarize by groups
summarise(flights, delay = mean(dep_delay, na.rm = TRUE))## # A tibble: 1 × 1
## delay
## <dbl>
## 1 12.6by_day <- group_by(flights, year, month, day)
summarise(by_day, delay = mean(dep_delay, na.rm = TRUE))## # A tibble: 365 × 4
## # Groups: year, month [12]
## year month day delay
## <int> <int> <int> <dbl>
## 1 2013 1 1 11.5
## 2 2013 1 2 13.9
## 3 2013 1 3 11.0
## 4 2013 1 4 8.95
## 5 2013 1 5 5.73
## 6 2013 1 6 7.15
## 7 2013 1 7 5.42
## 8 2013 1 8 2.55
## 9 2013 1 9 2.28
## 10 2013 1 10 2.84
## # ℹ 355 more rowsby_dest <- group_by(flights, dest)
delay <- summarise(by_dest,
count = n(),
dist = mean(distance, na.rm = TRUE),
delay = mean(arr_delay, na.rm = TRUE)
)
delay <- filter(delay, count > 20, dest != "HNL")
ggplot(data = delay, mapping = aes(x = dist, y = delay)) +
geom_point(aes(size = count), alpha = 1/3) +
geom_smooth(se = FALSE)
It looks like delays increase with distance up to ~750 miles and then decrease. Maybe as flights get longer there’s more ability to make up delays in the air?
flights %>%
group_by(dest) %>%
summarise(count = n(),
dist = mean(distance, nr.rm = TRUE),
delay = mean(arr_delay, na.rm = TRUE)) %>%
#Plot
ggplot(mapping = aes(x = dist, y = delay)) +
geom_point(aes(size = count), alpha = 0.3) +
geom_smooth(se = FALSE) ## Warning: Removed 1 row containing non-finite outside the scale range
## (`stat_smooth()`).## Warning: Removed 1 row containing missing values or values outside the scale range
## (`geom_point()`).
Missing Values
flights %>%
# Remove missing values
filter(!is.na(dep_delay))## # A tibble: 328,521 × 19
## year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
## <int> <int> <int> <int> <int> <dbl> <int> <int>
## 1 2013 1 1 517 515 2 830 819
## 2 2013 1 1 533 529 4 850 830
## 3 2013 1 1 542 540 2 923 850
## 4 2013 1 1 544 545 -1 1004 1022
## 5 2013 1 1 554 600 -6 812 837
## 6 2013 1 1 554 558 -4 740 728
## 7 2013 1 1 555 600 -5 913 854
## 8 2013 1 1 557 600 -3 709 723
## 9 2013 1 1 557 600 -3 838 846
## 10 2013 1 1 558 600 -2 753 745
## # ℹ 328,511 more rows
## # ℹ 11 more variables: arr_delay <dbl>, carrier <chr>, flight <int>,
## # tailnum <chr>, origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>,
## # hour <dbl>, minute <dbl>, time_hour <dttm>grouping multiple variables
flights %>%
group_by(year, month) %>%
summarise(count = n()) %>%
ungroup()## # A tibble: 12 × 3
## year month count
## <int> <int> <int>
## 1 2013 1 27004
## 2 2013 2 24951
## 3 2013 3 28834
## 4 2013 4 28330
## 5 2013 5 28796
## 6 2013 6 28243
## 7 2013 7 29425
## 8 2013 8 29327
## 9 2013 9 27574
## 10 2013 10 28889
## 11 2013 11 27268
## 12 2013 12 28135