Load data

w = 2000 + h = 1100. PreciseTAD with sliding window of 2000 (5KB resolution) and smoothing h = 1100

e = 0.1 and t = 0.1

##   left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1   900000   2555000    1720000        0.6347220     0.01829268       0
## 2  2410000   2555000    2480000        0.5139072     0.07142857       0
## 3  2555000   3455000    2995000        0.8111084     0.04545455       0
## 4  2555000   3655000    3080000        0.8177772     0.09523810       0
## 5  2555000   3655000    3105000        0.8356176     0.00000000       0
## 6  2555000   3890000    3200000        0.8205000     0.06976744       0
##   actual_size
## 1     1655000
## 2      145000
## 3      900000
## 4     1100000
## 5     1100000
## 6     1335000
## Summary of size is:
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   55000  175000 1255000 1584748 2707500 4875000

Arm1 - Report error of closest IS boundary and preciseTAD

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##       0   15000   42500   77500  115000  600000

## [1] "Number of overlapped TAD is 25"

Arm1 - Number of TAD generated from each boundaries

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   1.000   1.000   2.000   2.685   3.000  24.000
## 
##   1   2   3   4   5   6   8   9  10  11  12  13  14  15  16  18  20  21  24 
## 193 155  95  16   8   4   3   3   2   3   1   2   3   3   4   3   2   1   1

Set different number of cutt-off for strong boundary




w = 5000 + h = 1500. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500

e = 0.1 and t = 0.1

## Summary of size is:
##     Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
##    55000   320000  5450000  6788238 11620000 24145000

Arm1 - Report error of closest IS boundary and preciseTAD

## Summary of distance from preciseTAD and closest IS boundary:
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##       0   15000   50000   77549  110000  600000

## [1] "Number of overlapped TAD is 35"

Arm1 - Number of TAD generated from each boundaries

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   1.000   1.000   2.000   3.352   3.000 161.000
## 
##   1   2   3   4   5   6   7   8   9  12  15  83  96 103 140 146 161 
## 215 218 104  33  13   8   4   2   2   2   1   1   1   1   1   1   1

Set different number of cutt-off for strong boundary






w = 5000 + h = 2000. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500

e = 0.1 and t = 0.1

##   left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1   265000  24835000   11935000        0.5076636     0.10539846       0
## 2   265000  24835000   12010000        0.1136124     0.09195402       0
## 3   265000  24835000   12090000        0.1672428     0.07780127       0
## 4   265000  24835000   12170000        0.1524768     0.06383872       0
## 5   265000  24835000   12245000        0.2153376     0.05091820       0
## 6   265000  24835000   12360000        0.5901984     0.03141794       0
##   actual_size
## 1    24570000
## 2    24570000
## 3    24570000
## 4    24570000
## 5    24570000
## 6    24570000
## Summary of size is:
##     Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
##    45000   302500  6995000  7749693 13135000 24570000

Arm1 - Report error of closest IS boundary and preciseTAD

## Summary of distance from preciseTAD and closest IS boundary:
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##       0   15000   55000   79396  110000  600000

## [1] "Number of overlapped TAD is 42"

Arm1 - Number of TAD generated from each boundaries

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    1.00    1.00    2.00    3.36    2.00  200.00
## 
##   1   2   3   4   5   6   7   8   9  11  12  14  15  18 102 191 198 200 
## 273 276  97  41  13   5   6   3   2   1   1   3   1   1   1   1   2   1

Set different number of cutt-off for strong boundary




w = 5000 + h = 4000. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500

e = 0.1 and t = 0.1

##   left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1   265000   9620000    4695000        0.6041520     0.11173815       0
## 2   265000   9620000    4755000        0.6997348     0.08351893       0
## 3   265000   9620000    4980000        0.7866904     0.01616379       0
## 4   265000   9620000    5030000        0.8169944     0.03812636       0
## 5   265000   9620000    5100000        0.8180908     0.06969027       0
## 6   265000   9620000    5155000        0.8180908     0.09518477       0
##   actual_size
## 1     9355000
## 2     9355000
## 3     9355000
## 4     9355000
## 5     9355000
## 6     9355000
## Summary of size is:
##     Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
##    30000   410000  6180000  7313187 12245000 23885000

Arm1 - Report error of closest IS boundary and preciseTAD

## Summary of distance from preciseTAD and closest IS boundary:
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##       0   20000   55000   78654  110000  600000

## [1] "Number of overlapped TAD is 43"

Arm1 - Number of TAD generated from each boundaries

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   1.000   1.000   2.000   3.782   3.000 289.000
## 
##   1   2   3   4   5   6   7   8  11  12  13  14  15  18  20 140 177 178 180 181 
## 336 336 178  68  28  19   6   4   4   6   2   2   1   1   1   1   1   1   1   1 
## 268 289 
##   1   1

Set different number of cutt-off for strong boundary