18_preciseTAD_diffWindow_slicing
My Nguyen
2024-04-10
Load data
TAD from Insulation Score
IS - TAD size
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 65000 185000 265000 374547 400000 24490000
w = 500 + h = 1100. PreciseTAD with sliding window of 500 (5KB resolution) and smoothing h = 1100
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 1020000 2060000 1530000 0.3739284 0.03921569 0
## 2 1020000 2410000 1720000 0.5694892 0.01449275 0
## 3 1785000 1925000 1855000 0.4547684 0.00000000 0
## 4 1925000 2060000 1990000 0.2613912 0.07692308 0
## 5 1645000 1785000 1720000 0.2866044 0.15384615 0
## 6 1925000 2060000 1990000 0.2613912 0.07692308 0
## actual_size
## 1 1040000
## 2 1390000
## 3 140000
## 4 135000
## 5 140000
## 6 135000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 55000 140000 170000 540875 820000 2390000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 40000 77269 115000 600000
## [1] "Number of overlapped TAD is 25"
w = 2000 + h = 1100. PreciseTAD with sliding window of 2000 (5KB resolution) and smoothing h = 1100
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 900000 2555000 1720000 0.6347220 0.01829268 0
## 2 2410000 2555000 2480000 0.5139072 0.07142857 0
## 3 2555000 3455000 2995000 0.8111084 0.04545455 0
## 4 2555000 3655000 3080000 0.8177772 0.09523810 0
## 5 2555000 3655000 3105000 0.8356176 0.00000000 0
## 6 2555000 3890000 3200000 0.8205000 0.06976744 0
## actual_size
## 1 1655000
## 2 145000
## 3 900000
## 4 1100000
## 5 1100000
## 6 1335000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 55000 175000 1255000 1584748 2707500 4875000## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 42500 77500 115000 600000
## [1] "Number of overlapped TAD is 25"
w = 5000 + h = 1100. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1100
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 900000 2555000 1720000 0.6347220 0.01829268 0
## 2 2410000 2555000 2480000 0.5139072 0.07142857 0
## 3 2555000 3455000 2995000 0.8111084 0.04545455 0
## 4 2555000 3655000 3080000 0.8177772 0.09523810 0
## 5 2555000 3655000 3105000 0.8356176 0.00000000 0
## 6 2555000 3890000 3200000 0.8205000 0.06976744 0
## actual_size
## 1 1655000
## 2 145000
## 3 900000
## 4 1100000
## 5 1100000
## 6 1335000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 55000 376250 3617500 4547469 7705000 14835000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 45000 79464 120000 600000
## [1] "Number of overlapped TAD is 26"
w = 7000 + h = 1100. PreciseTAD with sliding window of 7000 (5KB resolution) and smoothing h = 1100
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 265000 26840000 12910000 0.8104820 0.10162119 0
## 2 265000 26840000 12955000 0.8065008 0.09416864 0
## 3 265000 26840000 13020000 0.8179160 0.08349667 0
## 4 265000 26840000 13055000 0.8068556 0.07779515 0
## 5 265000 26840000 13135000 0.7944448 0.06487956 0
## 6 265000 26840000 13165000 0.7721396 0.06007752 0
## actual_size
## 1 26575000
## 2 26575000
## 3 26575000
## 4 26575000
## 5 26575000
## 6 26575000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 55000 356250 8157500 9855754 16195000 34615000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 45000 80099 121250 600000
## [1] "Number of overlapped TAD is 25"
w = 5000 + h = 1500. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 265000 11050000 5435000 0.6811744 0.086073501 0
## 2 265000 11050000 5575000 0.6442028 0.031073446 0
## 3 265000 11050000 5680000 0.6888628 0.008379888 0
## 4 265000 11050000 5840000 0.6877072 0.070057582 0
## 5 890000 11050000 5975000 0.1503184 0.001970443 0
## 6 1115000 11050000 6290000 0.6579256 0.087184874 0
## actual_size
## 1 10785000
## 2 10785000
## 3 10785000
## 4 10785000
## 5 10160000
## 6 9935000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 55000 320000 5450000 6788238 11620000 24145000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 50000 77549 110000 600000
## [1] "Number of overlapped TAD is 35"w = 5000 + h = 2000. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 265000 24835000 11935000 0.5076636 0.10539846 0
## 2 265000 24835000 12010000 0.1136124 0.09195402 0
## 3 265000 24835000 12090000 0.1672428 0.07780127 0
## 4 265000 24835000 12170000 0.1524768 0.06383872 0
## 5 265000 24835000 12245000 0.2153376 0.05091820 0
## 6 265000 24835000 12360000 0.5901984 0.03141794 0
## actual_size
## 1 24570000
## 2 24570000
## 3 24570000
## 4 24570000
## 5 24570000
## 6 24570000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 45000 302500 6995000 7749693 13135000 24570000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 15000 55000 79396 110000 600000
## [1] "Number of overlapped TAD is 42"
w = 5000 + h = 4000. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 265000 9620000 4695000 0.6041520 0.11173815 0
## 2 265000 9620000 4755000 0.6997348 0.08351893 0
## 3 265000 9620000 4980000 0.7866904 0.01616379 0
## 4 265000 9620000 5030000 0.8169944 0.03812636 0
## 5 265000 9620000 5100000 0.8180908 0.06969027 0
## 6 265000 9620000 5155000 0.8180908 0.09518477 0
## actual_size
## 1 9355000
## 2 9355000
## 3 9355000
## 4 9355000
## 5 9355000
## 6 9355000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 30000 410000 6180000 7313187 12245000 23885000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 20000 55000 78654 110000 600000
## [1] "Number of overlapped TAD is 43"
w = 5000 + h = 7000. PreciseTAD with sliding window of 5000 (5KB resolution) and smoothing h = 1500
e = 0.1 and t = 0.1
Arm1
## left_TAD right_TAD center_TAD averageProb_diff error_symetric overlap
## 1 265000 9625000 4755000 0.6997348 0.084632517 0
## 2 265000 9625000 4895000 0.6989204 0.021598272 0
## 3 265000 9625000 4920000 0.7403324 0.010741139 0
## 4 265000 9625000 4965000 0.7715184 0.008583691 0
## 5 265000 9625000 4985000 0.8039476 0.017241379 0
## 6 265000 9625000 5030000 0.8169944 0.036996736 0
## actual_size
## 1 9360000
## 2 9360000
## 3 9360000
## 4 9360000
## 5 9360000
## 6 9360000## Summary of size is:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 20000 927500 5880000 6978387 11575000 22085000## Summary of distance from preciseTAD and closest IS boundary:## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 0 20000 55000 79036 110000 600000
## [1] "Number of overlapped TAD is 46"