library(ISLR2)
data("Boston")
attach(Boston)
lm.fit <- lm(medv ~ lstat, data = Boston)
lm.fit
##
## Call:
## lm(formula = medv ~ lstat, data = Boston)
##
## Coefficients:
## (Intercept) lstat
## 34.55 -0.95
summary(lm.fit)
##
## Call:
## lm(formula = medv ~ lstat, data = Boston)
##
## Residuals:
## Min 1Q Median 3Q Max
## -15.168 -3.990 -1.318 2.034 24.500
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 34.55384 0.56263 61.41 <2e-16 ***
## lstat -0.95005 0.03873 -24.53 <2e-16 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 6.216 on 504 degrees of freedom
## Multiple R-squared: 0.5441, Adjusted R-squared: 0.5432
## F-statistic: 601.6 on 1 and 504 DF, p-value: < 2.2e-16
coef(lm.fit)
## (Intercept) lstat
## 34.5538409 -0.9500494
confint(lm.fit)
## 2.5 % 97.5 %
## (Intercept) 33.448457 35.6592247
## lstat -1.026148 -0.8739505
predict(lm.fit, data.frame(lstat = c(5, 10, 15)), interval = "confidence")
## fit lwr upr
## 1 29.80359 29.00741 30.59978
## 2 25.05335 24.47413 25.63256
## 3 20.30310 19.73159 20.87461
predict(lm.fit, data.frame(lstat = c(5, 10, 15)), interval = "prediction")
## fit lwr upr
## 1 29.80359 17.565675 42.04151
## 2 25.05335 12.827626 37.27907
## 3 20.30310 8.077742 32.52846
plot(lstat, medv)
abline(lm.fit)
abline(lm.fit, lwd = 3)
abline(lm.fit, lwd = 3, col = "red")
plot(lstat, medv, pch = 20)
plot(lstat, medv, pch = "+")
plot(1:20, 1:20, pch = 1:20)
par(mfrow = c(2, 2))
plot(lm.fit)
# Plot residuals against fitted values and studentized residuals
plot(predict(lm.fit), residuals(lm.fit))
plot(predict(lm.fit), rstudent(lm.fit))
# Compute leverage statistics and plot
plot(hatvalues(lm.fit))
which.max(hatvalues(lm.fit))
## 375
## 375
library(ISLR2)
data("Auto")
# (a) Perform simple linear regression with mpg as the response and horsepower as the predictor
lm.fit <- lm(mpg ~ horsepower, data = Auto)
summary(lm.fit)
##
## Call:
## lm(formula = mpg ~ horsepower, data = Auto)
##
## Residuals:
## Min 1Q Median 3Q Max
## -13.5710 -3.2592 -0.3435 2.7630 16.9240
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 39.935861 0.717499 55.66 <2e-16 ***
## horsepower -0.157845 0.006446 -24.49 <2e-16 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 4.906 on 390 degrees of freedom
## Multiple R-squared: 0.6059, Adjusted R-squared: 0.6049
## F-statistic: 599.7 on 1 and 390 DF, p-value: < 2.2e-16
plot(Auto$horsepower, Auto$mpg, xlab = "Horsepower", ylab = "MPG", main = "Simple Linear Regression: MPG vs Horsepower")
abline(lm.fit, col = "red")
par(mfrow = c(2, 2))
plot(lm.fit)
#10
data("Carseats")
# (a) Fit a multiple regression model to predict Sales using Price, Urban, and US
lm.fit <- lm(Sales ~ Price + Urban + US, data = Carseats)
# (b) Interpretation of each coefficient
summary(lm.fit)
##
## Call:
## lm(formula = Sales ~ Price + Urban + US, data = Carseats)
##
## Residuals:
## Min 1Q Median 3Q Max
## -6.9206 -1.6220 -0.0564 1.5786 7.0581
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 13.043469 0.651012 20.036 < 2e-16 ***
## Price -0.054459 0.005242 -10.389 < 2e-16 ***
## UrbanYes -0.021916 0.271650 -0.081 0.936
## USYes 1.200573 0.259042 4.635 4.86e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 2.472 on 396 degrees of freedom
## Multiple R-squared: 0.2393, Adjusted R-squared: 0.2335
## F-statistic: 41.52 on 3 and 396 DF, p-value: < 2.2e-16
# (c) Write out the model in equation form
# Sales = β0 + β1 * Price + β2 * UrbanYes + β3 * USYes + ε
# (d) For which of the predictors can you reject the null hypothesis H0 : βj = 0?
# Examine the p-values in the summary output to determine which coefficients are statistically significant
# (e) Fit a smaller model that only uses the predictors for which there is evidence of association with the outcome
lm.fit_smaller <- lm(Sales ~ Price + US, data = Carseats)
# (f) Assess the model fit for both models (a) and (e)
summary(lm.fit)
##
## Call:
## lm(formula = Sales ~ Price + Urban + US, data = Carseats)
##
## Residuals:
## Min 1Q Median 3Q Max
## -6.9206 -1.6220 -0.0564 1.5786 7.0581
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 13.043469 0.651012 20.036 < 2e-16 ***
## Price -0.054459 0.005242 -10.389 < 2e-16 ***
## UrbanYes -0.021916 0.271650 -0.081 0.936
## USYes 1.200573 0.259042 4.635 4.86e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 2.472 on 396 degrees of freedom
## Multiple R-squared: 0.2393, Adjusted R-squared: 0.2335
## F-statistic: 41.52 on 3 and 396 DF, p-value: < 2.2e-16
summary(lm.fit_smaller)
##
## Call:
## lm(formula = Sales ~ Price + US, data = Carseats)
##
## Residuals:
## Min 1Q Median 3Q Max
## -6.9269 -1.6286 -0.0574 1.5766 7.0515
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 13.03079 0.63098 20.652 < 2e-16 ***
## Price -0.05448 0.00523 -10.416 < 2e-16 ***
## USYes 1.19964 0.25846 4.641 4.71e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 2.469 on 397 degrees of freedom
## Multiple R-squared: 0.2393, Adjusted R-squared: 0.2354
## F-statistic: 62.43 on 2 and 397 DF, p-value: < 2.2e-16
# (g) Obtain 95% confidence intervals for the coefficient(s) in the smaller model
confint(lm.fit_smaller)
## 2.5 % 97.5 %
## (Intercept) 11.79032020 14.27126531
## Price -0.06475984 -0.04419543
## USYes 0.69151957 1.70776632
# (h) Check for evidence of outliers or high leverage observations
# Use diagnostic plots such as residuals vs. fitted values plot, Cook's distance, etc.
plot(lm.fit_smaller)
#14
# Generate data
set.seed(1)
x1 <- runif(100)
x2 <- 0.5 * x1 + rnorm(100) / 10
# Calculate correlation
correlation <- cor(x1, x2)
print(correlation)
## [1] 0.8351212
# Create scatterplot
plot(x1, x2, main = "Scatterplot of x1 vs x2", xlab = "x1", ylab = "x2")
# Generate data
y <- 2 + 2 * x1 + 0.3 * x2 + rnorm(100)
# Fit least squares regression using only x1
lm.fit_x1 <- lm(y ~ x1)
# Describe the results
summary(lm.fit_x1)
##
## Call:
## lm(formula = y ~ x1)
##
## Residuals:
## Min 1Q Median 3Q Max
## -2.89495 -0.66874 -0.07785 0.59221 2.45560
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.1124 0.2307 9.155 8.27e-15 ***
## x1 1.9759 0.3963 4.986 2.66e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.055 on 98 degrees of freedom
## Multiple R-squared: 0.2024, Adjusted R-squared: 0.1942
## F-statistic: 24.86 on 1 and 98 DF, p-value: 2.661e-06
# Fit least squares regression using only x2
lm.fit_x2 <- lm(y ~ x2)
# Describe the results
summary(lm.fit_x2)
##
## Call:
## lm(formula = y ~ x2)
##
## Residuals:
## Min 1Q Median 3Q Max
## -2.62687 -0.75156 -0.03598 0.72383 2.44890
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.3899 0.1949 12.26 < 2e-16 ***
## x2 2.8996 0.6330 4.58 1.37e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.072 on 98 degrees of freedom
## Multiple R-squared: 0.1763, Adjusted R-squared: 0.1679
## F-statistic: 20.98 on 1 and 98 DF, p-value: 1.366e-05
# Add the additional observation
x1 <- c(x1, 0.1)
x2 <- c(x2, 0.8)
y <- c(y, 6)
# Refit the linear models
lm.fit_new <- lm(y ~ x1 + x2)
lm.fit_x1_new <- lm(y ~ x1)
lm.fit_x2_new <- lm(y ~ x2)
# Describe the results
summary(lm.fit_new)
##
## Call:
## lm(formula = y ~ x1 + x2)
##
## Residuals:
## Min 1Q Median 3Q Max
## -2.73348 -0.69318 -0.05263 0.66385 2.30619
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.2267 0.2314 9.624 7.91e-16 ***
## x1 0.5394 0.5922 0.911 0.36458
## x2 2.5146 0.8977 2.801 0.00614 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.075 on 98 degrees of freedom
## Multiple R-squared: 0.2188, Adjusted R-squared: 0.2029
## F-statistic: 13.72 on 2 and 98 DF, p-value: 5.564e-06
summary(lm.fit_x1_new)
##
## Call:
## lm(formula = y ~ x1)
##
## Residuals:
## Min 1Q Median 3Q Max
## -2.8897 -0.6556 -0.0909 0.5682 3.5665
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.2569 0.2390 9.445 1.78e-15 ***
## x1 1.7657 0.4124 4.282 4.29e-05 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.111 on 99 degrees of freedom
## Multiple R-squared: 0.1562, Adjusted R-squared: 0.1477
## F-statistic: 18.33 on 1 and 99 DF, p-value: 4.295e-05
summary(lm.fit_x2_new)
##
## Call:
## lm(formula = y ~ x2)
##
## Residuals:
## Min 1Q Median 3Q Max
## -2.64729 -0.71021 -0.06899 0.72699 2.38074
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 2.3451 0.1912 12.264 < 2e-16 ***
## x2 3.1190 0.6040 5.164 1.25e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 1.074 on 99 degrees of freedom
## Multiple R-squared: 0.2122, Adjusted R-squared: 0.2042
## F-statistic: 26.66 on 1 and 99 DF, p-value: 1.253e-06
