Birds_National
Ron Chen
2024-03-21
## Loading required package: readxl## Loading required package: lubridate##
## Attaching package: 'lubridate'## The following objects are masked from 'package:data.table':
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## hour, isoweek, mday, minute, month, quarter, second, wday, week,
## yday, year## The following objects are masked from 'package:base':
##
## date, intersect, setdiff, union## Loading required package: solartime## - Winter data excluded.
## - The counts of all passing / wintering species (not breeding in the sampled unit) were set to zero. Abreed_and_non_breed contains the non-breeders as well.
## - Species less likely to be interacting with sampling location were EXCLUDED
## - observations with counts greater than or equal to 10 standard deviations AND greater than or equal to 60 individuals were set to 1,
## under the assumption that these are migrating or local wandering phenomena.
## No outliers found in unit Arid South.
## 2 outliers set equal to 1 in Herbaceous and Dwarf-Shrub Vegetation unit.
## unit point_name year
## 1: Herbaceous and Dwarf-Shrub Vegetation Gamla Near 3 2014
## 2: Herbaceous and Dwarf-Shrub Vegetation Yavneel Far 2 2018
## SciName count_under_250 Z_score
## 1: Passer domesticus 62 11.90316
## 2: Passer hispaniolensis 60 11.35733
## No outliers found in unit Inland Sands.
## No outliers found in unit Loess Covered Areas in the Northern Negev.
## No outliers found in unit Mediterranean-Desert Transition Zone.
## 5 outliers set equal to 1 in Mediterranean Maquis unit.
## unit point_name year SciName
## 1: Mediterranean Maquis Beit Oren Near 1 2019 Curruca curruca
## 2: Mediterranean Maquis Beit Oren Near 3 2019 Curruca curruca
## 3: Mediterranean Maquis Kerem Maharal Near 3 2021 Chloris chloris
## 4: Mediterranean Maquis Kerem Maharal Near 3 2021 Garrulus glandarius
## 5: Mediterranean Maquis Nir Etzion Far 11 2021 Columba livia
## count_under_250 Z_score
## 1: 99 11.94535
## 2: 142 17.16927
## 3: 80 19.19266
## 4: 150 20.50138
## 5: 100 14.85118
## 2 outliers set equal to 1 in Negev Highlands unit.
## unit point_name year SciName
## 1: Negev Highlands Yeruham Far Slope 5 2018 Carpospiza brachydactyla
## 2: Negev Highlands Bislach Near Slope 6 2020 Passer hispaniolensis
## count_under_250 Z_score
## 1: 70 14.34802
## 2: 100 10.61343
## No outliers found in unit Planted Conifer Forest.National analysis - analyze ALL data from all units
Species in NATIONAL analysis, all plots, minimum number of plots 80 and minimum number of units 3`:
| I | SciName | HebName |
|---|---|---|
| 1 | Acridotheres tristis | מיינה מצויה |
| 2 | Alectoris chukar | חוגלת סלעים |
| 3 | Cinnyris osea | צופית בוהקת |
| 4 | Columba livia | יונת סלעים |
| 5 | Falco tinnunculus | בז מצוי |
| 6 | Galerida cristata | עפרוני מצויץ |
| 7 | Passer domesticus | דרור הבית |
| 8 | Prinia gracilis | פשוש |
| 9 | Pycnonotus xanthopygos | בולבול ממושקף |
| 10 | Spilopelia senegalensis | צוצלת |
| 11 | Streptopelia decaocto | תור צווארון |
| 12 | Streptopelia turtur | תור מצוי |
| 13 | Carduelis carduelis | חוחית |
| 14 | Cecropis daurica | סנונית מערות |
| 15 | Chloris chloris | ירקון |
| 16 | Corvus cornix | עורב אפור |
| 17 | Curruca melanocephala | סבכי שחור-ראש |
| 18 | Garrulus glandarius | עורבני |
| 19 | Parus major | ירגזי מצוי |
| 20 | Turdus merula | שחרור |
| unit | subunit | agriculture | settlements | land_use | habitat | dunes | year | num_samples |
|---|---|---|---|---|---|---|---|---|
| Arid South | NA | Far | NA | NA | NA | NA | 2012 | 15 |
| Arid South | NA | Far | NA | NA | NA | NA | 2014 | 15 |
| Arid South | NA | Far | NA | NA | NA | NA | 2016 | 15 |
| Arid South | NA | Far | NA | NA | NA | NA | 2018 | 15 |
| Arid South | NA | Far | NA | NA | NA | NA | 2020 | 15 |
| Arid South | NA | Near | NA | NA | NA | NA | 2012 | 15 |
| Arid South | NA | Near | NA | NA | NA | NA | 2014 | 15 |
| Arid South | NA | Near | NA | NA | NA | NA | 2016 | 15 |
| Arid South | NA | Near | NA | NA | NA | NA | 2018 | 15 |
| Arid South | NA | Near | NA | NA | NA | NA | 2020 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Basalt | NA | 2014 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Basalt | NA | 2016 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Basalt | NA | 2018 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Basalt | NA | 2020 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Limestone | NA | 2014 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Limestone | NA | 2016 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Limestone | NA | 2018 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Far | NA | NA | Limestone | NA | 2020 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Basalt | NA | 2014 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Basalt | NA | 2016 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Basalt | NA | 2018 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Basalt | NA | 2020 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Limestone | NA | 2014 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Limestone | NA | 2016 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Limestone | NA | 2018 | 15 |
| Herbaceous and Dwarf-Shrub Vegetation | NA | Near | NA | NA | Limestone | NA | 2020 | 15 |
| Inland Sands | NA | Far | NA | NA | NA | Semi-Shifting | 2017 | 5 |
| Inland Sands | NA | Far | NA | NA | NA | Semi-Shifting | 2019 | 5 |
| Inland Sands | NA | Far | NA | NA | NA | Semi-Shifting | 2021 | 5 |
| Inland Sands | NA | Far | NA | NA | NA | Shifting | 2017 | 4 |
| Inland Sands | NA | Far | NA | NA | NA | Shifting | 2019 | 4 |
| Inland Sands | NA | Far | NA | NA | NA | Shifting | 2021 | 4 |
| Inland Sands | NA | Near | NA | NA | NA | Semi-Shifting | 2017 | 2 |
| Inland Sands | NA | Near | NA | NA | NA | Semi-Shifting | 2019 | 2 |
| Inland Sands | NA | Near | NA | NA | NA | Semi-Shifting | 2021 | 2 |
| Inland Sands | NA | Near | NA | NA | NA | Shifting | 2017 | 1 |
| Inland Sands | NA | Near | NA | NA | NA | Shifting | 2019 | 1 |
| Inland Sands | NA | Near | NA | NA | NA | Shifting | 2021 | 1 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Bedouin Agriculture | NA | NA | 2014 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Bedouin Agriculture | NA | NA | 2016 | 11 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Bedouin Agriculture | NA | NA | 2018 | 12 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Bedouin Agriculture | NA | NA | 2020 | 12 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | KKL Plantings | NA | NA | 2012 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | KKL Plantings | NA | NA | 2014 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | KKL Plantings | NA | NA | 2016 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | KKL Plantings | NA | NA | 2018 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | KKL Plantings | NA | NA | 2020 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Loess | NA | NA | 2012 | 15 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Loess | NA | NA | 2014 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Loess | NA | NA | 2016 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Loess | NA | NA | 2018 | 9 |
| Loess Covered Areas in the Northern Negev | NA | NA | NA | Loess | NA | NA | 2020 | 9 |
| Mediterranean-Desert Transition Zone | NA | NA | Far | NA | NA | NA | 2012 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Far | NA | NA | NA | 2014 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Far | NA | NA | NA | 2016 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Far | NA | NA | NA | 2018 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Far | NA | NA | NA | 2020 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Near | NA | NA | NA | 2012 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Near | NA | NA | NA | 2014 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Near | NA | NA | NA | 2016 | 14 |
| Mediterranean-Desert Transition Zone | NA | NA | Near | NA | NA | NA | 2018 | 15 |
| Mediterranean-Desert Transition Zone | NA | NA | Near | NA | NA | NA | 2020 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Far | NA | NA | NA | 2012 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Far | NA | NA | NA | 2015 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Far | NA | NA | NA | 2017 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Far | NA | NA | NA | 2019 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Far | NA | NA | NA | 2021 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Near | NA | NA | NA | 2012 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Near | NA | NA | NA | 2015 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Near | NA | NA | NA | 2017 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Near | NA | NA | NA | 2019 | 15 |
| Mediterranean Maquis | Judean Highlands | NA | Near | NA | NA | NA | 2021 | 15 |
| Mediterranean Maquis | Carmel | NA | Far | NA | NA | NA | 2012 | 15 |
| Mediterranean Maquis | Carmel | NA | Far | NA | NA | NA | 2015 | 15 |
| Mediterranean Maquis | Carmel | NA | Far | NA | NA | NA | 2017 | 14 |
| Mediterranean Maquis | Carmel | NA | Far | NA | NA | NA | 2019 | 15 |
| Mediterranean Maquis | Carmel | NA | Far | NA | NA | NA | 2021 | 15 |
| Mediterranean Maquis | Carmel | NA | Near | NA | NA | NA | 2012 | 16 |
| Mediterranean Maquis | Carmel | NA | Near | NA | NA | NA | 2015 | 14 |
| Mediterranean Maquis | Carmel | NA | Near | NA | NA | NA | 2017 | 15 |
| Mediterranean Maquis | Carmel | NA | Near | NA | NA | NA | 2019 | 15 |
| Mediterranean Maquis | Carmel | NA | Near | NA | NA | NA | 2021 | 15 |
| Mediterranean Maquis | Galilee | NA | Far | NA | NA | NA | 2012 | 14 |
| Mediterranean Maquis | Galilee | NA | Far | NA | NA | NA | 2015 | 16 |
| Mediterranean Maquis | Galilee | NA | Far | NA | NA | NA | 2017 | 15 |
| Mediterranean Maquis | Galilee | NA | Far | NA | NA | NA | 2019 | 15 |
| Mediterranean Maquis | Galilee | NA | Far | NA | NA | NA | 2021 | 15 |
| Mediterranean Maquis | Galilee | NA | Near | NA | NA | NA | 2012 | 14 |
| Mediterranean Maquis | Galilee | NA | Near | NA | NA | NA | 2015 | 14 |
| Mediterranean Maquis | Galilee | NA | Near | NA | NA | NA | 2017 | 14 |
| Mediterranean Maquis | Galilee | NA | Near | NA | NA | NA | 2019 | 14 |
| Mediterranean Maquis | Galilee | NA | Near | NA | NA | NA | 2021 | 14 |
| Negev Highlands | NA | NA | Far | NA | Slope | NA | 2012 | 15 |
| Negev Highlands | NA | NA | Far | NA | Slope | NA | 2014 | 15 |
| Negev Highlands | NA | NA | Far | NA | Slope | NA | 2016 | 15 |
| Negev Highlands | NA | NA | Far | NA | Slope | NA | 2018 | 15 |
| Negev Highlands | NA | NA | Far | NA | Slope | NA | 2020 | 15 |
| Negev Highlands | NA | NA | Far | NA | Wadi | NA | 2014 | 15 |
| Negev Highlands | NA | NA | Far | NA | Wadi | NA | 2016 | 15 |
| Negev Highlands | NA | NA | Far | NA | Wadi | NA | 2018 | 15 |
| Negev Highlands | NA | NA | Far | NA | Wadi | NA | 2020 | 15 |
| Negev Highlands | NA | NA | Near | NA | Slope | NA | 2012 | 15 |
| Negev Highlands | NA | NA | Near | NA | Slope | NA | 2014 | 15 |
| Negev Highlands | NA | NA | Near | NA | Slope | NA | 2016 | 15 |
| Negev Highlands | NA | NA | Near | NA | Slope | NA | 2018 | 15 |
| Negev Highlands | NA | NA | Near | NA | Slope | NA | 2020 | 15 |
| Planted Conifer Forest | Judean Highlands | NA | NA | NA | NA | NA | 2014 | 15 |
| Planted Conifer Forest | Judean Highlands | NA | NA | NA | NA | NA | 2015 | 15 |
| Planted Conifer Forest | Judean Highlands | NA | NA | NA | NA | NA | 2017 | 15 |
| Planted Conifer Forest | Judean Highlands | NA | NA | NA | NA | NA | 2019 | 15 |
| Planted Conifer Forest | Judean Highlands | NA | NA | NA | NA | NA | 2021 | 15 |
| Planted Conifer Forest | Carmel | NA | NA | NA | NA | NA | 2014 | 15 |
| Planted Conifer Forest | Carmel | NA | NA | NA | NA | NA | 2015 | 15 |
| Planted Conifer Forest | Carmel | NA | NA | NA | NA | NA | 2017 | 15 |
| Planted Conifer Forest | Carmel | NA | NA | NA | NA | NA | 2019 | 15 |
| Planted Conifer Forest | Carmel | NA | NA | NA | NA | NA | 2021 | 15 |
| Planted Conifer Forest | Galilee | NA | NA | NA | NA | NA | 2014 | 15 |
| Planted Conifer Forest | Galilee | NA | NA | NA | NA | NA | 2015 | 15 |
| Planted Conifer Forest | Galilee | NA | NA | NA | NA | NA | 2017 | 15 |
| Planted Conifer Forest | Galilee | NA | NA | NA | NA | NA | 2019 | 15 |
| Planted Conifer Forest | Galilee | NA | NA | NA | NA | NA | 2021 | 15 |
The following plots had zero total abundance:
| point_name | num_years |
|---|---|
| Beer Milka Far Semi-Shifting 2 | 1 |
| Beit Yatir Far 2 | 1 |
| Ein Yahav Far 3 | 1 |
| Ezuz Far Slope 6 | 2 |
| Har Amasa Far 2 | 1 |
| Manara KKL Plantings 2 | 1 |
| Merhav Am Far Wadi 3 | 1 |
| Nir Etzion Near 3 | 1 |
| Paran Far 31 | 1 |
| Samar Far 5 | 1 |
| Secher Far Semi-Shifting 4 | 1 |
| Shunra East Far Shifting 1 | 1 |
| Yahel Far 2 | 1 |
| Yahel Far 6 | 1 |
| Yeruham Far 4 | 1 |
| Yeruham Far Slope 2 | 1 |
| Yeruham Far Slope 5 | 3 |
| Yeruham Far Wadi 2 | 2 |
| Yeruham Far Wadi 41 | 1 |
| ZoFar Far 2 | 1 |
Only three plots had zeros for more than one year - no plots or sites to be removed.
## unit subunit site settlements agriculture habitat dunes land_use point_name
## 1: TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE## [1] "abundance observations, aggregated into plots and species (i.e., several observations from the same species in the same plot are aggregated):"
## [1] "zoom in on high abundance observations:"
explore variables
##
##
## Total number of samples:
##
## 1595| unit | subunit | site | year | year_ct | settlements | agriculture | habitat | dunes | land_use | point_name | date | datetime | td_sc | td_rad | cos_td_rad | sin_td_rad | timediff_Jun21 | monitors_name | wind | precipitation | temperature | clouds | h_from_sunrise | cos_hsun | sin_hsun | pilot | campaign | unit_site | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Mediterranean Maquis :444 | Judean Highlands:225 | Aderet : 45 | Min. :2012 | Min. :0.000 | Far :434 | Far : 222 | Basalt : 120 | Semi-Shifting: 21 | Bedouin Agriculture: 44 | Givat Yeshayahu Far 3: 6 | Min. :2012-04-10 00:00:00.00 | Min. :2015-04-15 08:08:00.00 | Min. :-2.3697 | Min. :-1.9108 | Min. :-0.3335 | Min. :-1.0000 | Length:1595 | Eyal Shochat: 251 | 0 : 59 | 0 : 200 | 0 : 4 | 0 : 47 | Length:1595 | Min. :-0.3289 | Min. :-0.2965 | Mode :logical | Min. :0.000 | Negev Highlands_Sde Boker : 42 | |
| Herbaceous and Dwarf-Shrub Vegetation:240 | Carmel :224 | Givat Yeshayahu: 45 | 1st Qu.:2014 | 1st Qu.:2.000 | Near:370 | Near: 204 | Limestone: 120 | Shifting : 15 | KKL Plantings : 45 | Lahav Near 4 : 6 | 1st Qu.:2014-07-01 00:00:00.00 | 1st Qu.:2016-05-07 06:00:00.00 | 1st Qu.:-0.6147 | 1st Qu.:-1.1189 | 1st Qu.: 0.4367 | 1st Qu.:-0.8996 | Class :difftime | Other : 80 | 1 : 60 | 3 : 5 | 1 : 63 | 1 : 4 | Class :difftime | 1st Qu.: 0.7236 | 1st Qu.: 0.2028 | FALSE:1481 | 1st Qu.:0.000 | Negev Highlands_Yeruham : 42 | |
| Planted Conifer Forest :225 | Galilee :220 | Kerem Maharal : 45 | Median :2017 | Median :5.000 | NA’s:791 | NA’s:1169 | Slope : 150 | NA’s :1559 | Loess : 51 | Aderet Far 2 : 5 | Median :2017-05-04 00:00:00.00 | Median :2018-04-22 07:17:00.00 | Median : 0.1484 | Median :-0.7746 | Median : 0.7147 | Median :-0.6995 | Mode :numeric | Sassi Haham : 71 | 2 : 23 | NA’s:1390 | 2 : 75 | 2 : 10 | Mode :numeric | Median : 0.8951 | Median : 0.4458 | TRUE :114 | Median :2.000 | Negev Highlands_Bislach : 36 | |
| Negev Highlands :210 | NA’s :926 | Ofer : 45 | Mean :2017 | Mean :4.665 | NA | NA | Wadi : 60 | NA | NA’s :1455 | Aderet Far 3 : 5 | Mean :2017-01-05 10:58:22.95 | Mean :2018-05-11 01:46:15.39 | Mean : 0.1289 | Mean :-0.7834 | Mean : 0.6291 | Mean :-0.6354 | NA | Asaf Mayrose: 41 | 3 : 4 | NA | 3 : 20 | 3 : 15 | NA | Mean : 0.8171 | Mean : 0.4422 | NA | Mean :1.639 | Negev Highlands_Ezuz : 36 | |
| Arid South :150 | NA | Sde Boker : 42 | 3rd Qu.:2019 | 3rd Qu.:7.000 | NA | NA | NA’s :1145 | NA | NA | Aderet Far 4 : 5 | 3rd Qu.:2019-04-27 00:00:00.00 | 3rd Qu.:2020-04-05 15:34:10.00 | 3rd Qu.: 0.8352 | 3rd Qu.:-0.4648 | 3rd Qu.: 0.8790 | 3rd Qu.:-0.4482 | NA | Eran Banker : 39 | NA’s:1449 | NA | NA’s:1433 | NA’s:1519 | NA | 3rd Qu.: 0.9787 | 3rd Qu.: 0.6903 | NA | 3rd Qu.:3.000 | Negev Highlands_Merhav Am : 36 | |
| Mediterranean-Desert Transition Zone :150 | NA | Yeruham : 42 | Max. :2021 | Max. :9.000 | NA | NA | NA | NA | NA | Aderet Near 1 : 5 | Max. :2021-05-30 00:00:00.00 | Max. :2021-05-30 10:03:00.00 | Max. : 4.9558 | Max. : 1.3944 | Max. : 1.0000 | Max. : 0.9845 | NA | (Other) : 90 | NA | NA | NA | NA | NA | Max. : 1.0000 | Max. : 1.0000 | NA | Max. :4.000 | Mediterranean-Desert Transition Zone_Lahav: 31 | |
| (Other) :176 | NA | (Other) :1331 | NA | NA | NA | NA | NA | NA | NA | (Other) :1563 | NA | NA’s :441 | NA | NA | NA | NA | NA | NA’s :1023 | NA | NA | NA | NA | NA | NA’s :441 | NA’s :441 | NA | NA | (Other) :1372 |
| unit | site | unit_site | year | campaign | pilot | cos_td_rad | sin_td_rad | |
|---|---|---|---|---|---|---|---|---|
| unit | 1.0000000 | -0.2493065 | 0.9776555 | 0.0309686 | 0.1194488 | -0.0909601 | 0.0212571 | -0.0506008 |
| site | -0.2493065 | 1.0000000 | -0.0813032 | -0.0398448 | -0.0791670 | 0.0518424 | -0.0667727 | -0.0536620 |
| unit_site | 0.9776555 | -0.0813032 | 1.0000000 | 0.0340564 | 0.1147870 | -0.0989883 | 0.0063428 | -0.0697907 |
| year | 0.0309686 | -0.0398448 | 0.0340564 | 1.0000000 | 0.9688117 | -0.4598330 | -0.4420415 | -0.5164166 |
| campaign | 0.1194488 | -0.0791670 | 0.1147870 | 0.9688117 | 1.0000000 | -0.3426907 | -0.4077227 | -0.5023426 |
| pilot | -0.0909601 | 0.0518424 | -0.0989883 | -0.4598330 | -0.3426907 | 1.0000000 | 0.0604798 | 0.0945456 |
| cos_td_rad | 0.0212571 | -0.0667727 | 0.0063428 | -0.4420415 | -0.4077227 | 0.0604798 | 1.0000000 | 0.7754125 |
| sin_td_rad | -0.0506008 | -0.0536620 | -0.0697907 | -0.5164166 | -0.5023426 | 0.0945456 | 0.7754125 | 1.0000000 |
start model specification:
## nb po
## 2912.622 4370.851## [1] "POISSON"
## [1] "NEGATIVE BINOMIAL"
negative binomial model is better than poisson according to residuals and AIC comparison.
## nb po nb2 nb3
## 2912.622 4370.851 2844.444 2902.072The addition of the explanatory variable ‘site’ is somewhat improving the AIC of the model. Start with unit and site. stepwise selection of model:
## Single term deletions
##
## Model:
## spp_no_rare ~ year_ct + unit_site + cos_td_rad + sin_td_rad
## Df AIC
## <none> 56889
## year_ct 20 56938
## unit_site 1480 65476
## cos_td_rad 20 56998
## sin_td_rad 20 57022remove cosine, probably not significant for all species
## Single term deletions
##
## Model:
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
## Df AIC
## <none> 56998
## year_ct 20 57064
## unit_site 1480 65713
## sin_td_rad 20 57040final model year, unit_site and sampling time of year.
##
## Test statistics:
## wald value
## (Intercept) 10.557
## year_ct 10.708
## unit_siteArid South_Lotan 3.674
## unit_siteArid South_Paran 4.376
## unit_siteArid South_Samar 2.563
## unit_siteArid South_Yahel 3.423
## unit_siteArid South_Yotvata 5.159
## unit_siteArid South_Zofar 3.423
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim 6.731
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla 9.370
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor 5.814
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe 7.378
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur 8.660
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet 6.502
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer 5.774
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal 10.367
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel 5.504
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron 4.104
## unit_siteInland Sands_Beer Milka 5.524
## unit_siteInland Sands_Secher 5.662
## unit_siteInland Sands_Shunra East 5.752
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi 7.817
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar 8.878
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral 8.762
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base 6.724
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev 9.556
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan 8.302
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base 5.981
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess 8.614
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked 9.590
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir 8.188
## unit_siteMediterranean-Desert Transition Zone_Dvir 8.247
## unit_siteMediterranean-Desert Transition Zone_Har Amasa 6.926
## unit_siteMediterranean-Desert Transition Zone_Lahav 6.893
## unit_siteMediterranean-Desert Transition Zone_Lehavim 8.966
## unit_siteMediterranean-Desert Transition Zone_Meitar 6.510
## unit_siteMediterranean-Desert Transition Zone_Mirsham 8.424
## unit_siteMediterranean Maquis_Abirim 3.527
## unit_siteMediterranean Maquis_Aderet 7.815
## unit_siteMediterranean Maquis_Beit Oren 6.386
## unit_siteMediterranean Maquis_Ein Yaakov 4.852
## unit_siteMediterranean Maquis_Givat Yearim 5.143
## unit_siteMediterranean Maquis_Givat Yeshayahu 6.639
## unit_siteMediterranean Maquis_Goren 3.602
## unit_siteMediterranean Maquis_Iftach 4.388
## unit_siteMediterranean Maquis_Kerem Maharal 5.554
## unit_siteMediterranean Maquis_Kfar Shamai 5.248
## unit_siteMediterranean Maquis_Margaliot 3.477
## unit_siteMediterranean Maquis_Nehusha 5.104
## unit_siteMediterranean Maquis_Nir Etzion 4.828
## unit_siteMediterranean Maquis_Ofer 5.031
## unit_siteMediterranean Maquis_Ramat Raziel 5.110
## unit_siteMediterranean Maquis_Yagur 6.632
## unit_siteNegev Highlands_Ashalim 4.627
## unit_siteNegev Highlands_Bislach 8.027
## unit_siteNegev Highlands_Ezuz 8.193
## unit_siteNegev Highlands_Mashabei Sadeh 4.626
## unit_siteNegev Highlands_Merhav Am 7.834
## unit_siteNegev Highlands_Mitzpe Ramon 5.159
## unit_siteNegev Highlands_Sde Boker 8.315
## unit_siteNegev Highlands_Yeruham 7.387
## unit_sitePlanted Conifer Forest_Aderet 1.802
## unit_sitePlanted Conifer Forest_Amatzia 2.584
## unit_sitePlanted Conifer Forest_Bat Shlomo 2.996
## unit_sitePlanted Conifer Forest_Eitanim 2.541
## unit_sitePlanted Conifer Forest_Elyakim 3.384
## unit_sitePlanted Conifer Forest_Eshtaol 1.433
## unit_sitePlanted Conifer Forest_Givat Yeshayahu 1.409
## unit_sitePlanted Conifer Forest_Kabri 3.011
## unit_sitePlanted Conifer Forest_Kerem Maharal 0.842
## unit_sitePlanted Conifer Forest_Manara 4.593
## unit_sitePlanted Conifer Forest_Meron 3.472
## unit_sitePlanted Conifer Forest_Ofer 2.802
## unit_sitePlanted Conifer Forest_Ramat Hashofet 0.775
## unit_sitePlanted Conifer Forest_Ramot Naftali 2.472
## unit_sitePlanted Conifer Forest_Zuriel 4.048
## sin_td_rad 9.494
## Pr(>wald)
## (Intercept) 0.01 **
## year_ct 0.01 **
## unit_siteArid South_Lotan 0.05 *
## unit_siteArid South_Paran 0.02 *
## unit_siteArid South_Samar 0.33
## unit_siteArid South_Yahel 0.05 *
## unit_siteArid South_Yotvata 0.01 **
## unit_siteArid South_Zofar 0.08 .
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel 0.01 **
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron 0.01 **
## unit_siteInland Sands_Beer Milka 0.01 **
## unit_siteInland Sands_Secher 0.01 **
## unit_siteInland Sands_Shunra East 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess 0.01 **
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Dvir 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Har Amasa 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Lahav 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Lehavim 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Meitar 0.01 **
## unit_siteMediterranean-Desert Transition Zone_Mirsham 0.01 **
## unit_siteMediterranean Maquis_Abirim 0.04 *
## unit_siteMediterranean Maquis_Aderet 0.01 **
## unit_siteMediterranean Maquis_Beit Oren 0.01 **
## unit_siteMediterranean Maquis_Ein Yaakov 0.01 **
## unit_siteMediterranean Maquis_Givat Yearim 0.01 **
## unit_siteMediterranean Maquis_Givat Yeshayahu 0.01 **
## unit_siteMediterranean Maquis_Goren 0.10 .
## unit_siteMediterranean Maquis_Iftach 0.03 *
## unit_siteMediterranean Maquis_Kerem Maharal 0.01 **
## unit_siteMediterranean Maquis_Kfar Shamai 0.01 **
## unit_siteMediterranean Maquis_Margaliot 0.02 *
## unit_siteMediterranean Maquis_Nehusha 0.01 **
## unit_siteMediterranean Maquis_Nir Etzion 0.01 **
## unit_siteMediterranean Maquis_Ofer 0.01 **
## unit_siteMediterranean Maquis_Ramat Raziel 0.01 **
## unit_siteMediterranean Maquis_Yagur 0.01 **
## unit_siteNegev Highlands_Ashalim 0.01 **
## unit_siteNegev Highlands_Bislach 0.01 **
## unit_siteNegev Highlands_Ezuz 0.01 **
## unit_siteNegev Highlands_Mashabei Sadeh 0.01 **
## unit_siteNegev Highlands_Merhav Am 0.01 **
## unit_siteNegev Highlands_Mitzpe Ramon 0.01 **
## unit_siteNegev Highlands_Sde Boker 0.01 **
## unit_siteNegev Highlands_Yeruham 0.01 **
## unit_sitePlanted Conifer Forest_Aderet 0.53
## unit_sitePlanted Conifer Forest_Amatzia 0.23
## unit_sitePlanted Conifer Forest_Bat Shlomo 0.06 .
## unit_sitePlanted Conifer Forest_Eitanim 0.03 *
## unit_sitePlanted Conifer Forest_Elyakim 0.02 *
## unit_sitePlanted Conifer Forest_Eshtaol 0.33
## unit_sitePlanted Conifer Forest_Givat Yeshayahu 0.64
## unit_sitePlanted Conifer Forest_Kabri 0.03 *
## unit_sitePlanted Conifer Forest_Kerem Maharal 0.73
## unit_sitePlanted Conifer Forest_Manara 0.01 **
## unit_sitePlanted Conifer Forest_Meron 0.02 *
## unit_sitePlanted Conifer Forest_Ofer 0.06 .
## unit_sitePlanted Conifer Forest_Ramat Hashofet 0.75
## unit_sitePlanted Conifer Forest_Ramot Naftali 0.23
## unit_sitePlanted Conifer Forest_Zuriel 0.01 **
## sin_td_rad 0.01 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Test statistic: 69.07, p-value: 0.01
## Arguments:
## Test statistics calculated assuming response assumed to be uncorrelated
## P-value calculated using 99 resampling iterations via pit.trap resampling (to account for correlation in testing).## Analysis of Deviance Table
##
## Model: spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
## Multivariate test:
## Res.Df Df.diff Dev Pr(>Dev)
## (Intercept) 1594
## year_ct 1593 1 126 0.01 **
## unit_site 1519 74 11644 0.01 **
## sin_td_rad 1518 1 82 0.01 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Univariate Tests:
## Acridotheres.tristis Alectoris.chukar
## Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 31.077 0.01 0.811 0.92
## unit_site 328.075 0.01 261.901 0.01
## sin_td_rad 6.258 0.22 2.15 0.92
## Carduelis.carduelis Chloris.chloris Columba.livia
## Dev Pr(>Dev) Dev Pr(>Dev) Dev
## (Intercept)
## year_ct 0.091 0.99 1.31 0.92 0.007
## unit_site 391.442 0.01 415.176 0.01 361.778
## sin_td_rad 0.26 1.00 2.24 0.92 0.102
## Corvus.cornix Falco.tinnunculus
## Pr(>Dev) Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 0.99 1.064 0.92 0.021 0.99
## unit_site 0.01 397.192 0.01 247.175 0.01
## sin_td_rad 1.00 1.025 0.98 0 1.00
## Galerida.cristata Garrulus.glandarius
## Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 0.238 0.97 1.292 0.92
## unit_site 1445.011 0.01 625.904 0.01
## sin_td_rad 18.452 0.01 0.222 1.00
## Cecropis.daurica Cinnyris.osea Parus.major
## Dev Pr(>Dev) Dev Pr(>Dev) Dev
## (Intercept)
## year_ct 2.411 0.72 1.205 0.92 8.26
## unit_site 284.887 0.01 513.542 0.01 772.286
## sin_td_rad 0.189 1.00 4.474 0.48 14.024
## Passer.domesticus Prinia.gracilis
## Pr(>Dev) Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 0.04 4.127 0.32 1.382 0.91
## unit_site 0.01 389.55 0.01 395.09 0.01
## sin_td_rad 0.02 1.416 0.94 0.09 1.00
## Pycnonotus.xanthopygos Spilopelia.senegalensis
## Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 4.268 0.32 10.727 0.02
## unit_site 477.507 0.01 392.422 0.01
## sin_td_rad 1.416 0.94 0.05 1.00
## Streptopelia.decaocto Streptopelia.turtur
## Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 2.379 0.72 42.607 0.01
## unit_site 458.039 0.01 232.075 0.01
## sin_td_rad 0.745 1.00 1.726 0.94
## Curruca.melanocephala Turdus.merula
## Dev Pr(>Dev) Dev Pr(>Dev)
## (Intercept)
## year_ct 2.385 0.72 10.728 0.02
## unit_site 1658.304 0.01 1596.182 0.01
## sin_td_rad 13.287 0.04 13.796 0.03
## Arguments:
## Test statistics calculated assuming uncorrelated response (for faster computation)
## P-value calculated using 99 iterations via PIT-trap resampling.plot coefficients:
## Loading required package: ggnewscale## Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
## ℹ Please use `linewidth` instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.## Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
## ℹ Please use the `linewidth` argument instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.## [1] "black arrow is median of synanthrope/invasive\ngreen arrow is median of batha specialists\n\n"
Plot individual species
Streptopelia turtur
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## 0.80637900
## year_ct
## -0.18670018
## unit_siteArid South_Lotan
## -14.37136594
## unit_siteArid South_Paran
## -1.38323155
## unit_siteArid South_Samar
## -1.64576685
## unit_siteArid South_Yahel
## -1.70397690
## unit_siteArid South_Yotvata
## -0.52886253
## unit_siteArid South_Zofar
## -1.07441522
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -14.37342418
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## -2.88378434
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -1.38359027
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -1.07350204
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 0.42340266
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -1.39230753
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -0.62253722
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -1.76037725
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -2.84394733
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -14.37673112
## unit_siteInland Sands_Beer Milka
## -13.95206803
## unit_siteInland Sands_Secher
## -13.89692871
## unit_siteInland Sands_Shunra East
## -13.91858229
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## -1.87658820
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## -1.61519354
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## -1.71335357
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## -15.77187166
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## -2.19039910
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -1.39181438
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -16.09623384
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -2.26130764
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -2.75678211
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## -3.00976908
## unit_siteMediterranean-Desert Transition Zone_Dvir
## -1.77395500
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## -0.28405375
## unit_siteMediterranean-Desert Transition Zone_Lahav
## -0.35564421
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## -3.21652922
## unit_siteMediterranean-Desert Transition Zone_Meitar
## -1.53962045
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## -0.11765088
## unit_siteMediterranean Maquis_Abirim
## -0.83188503
## unit_siteMediterranean Maquis_Aderet
## -2.08346002
## unit_siteMediterranean Maquis_Beit Oren
## -2.02501269
## unit_siteMediterranean Maquis_Ein Yaakov
## -1.61712651
## unit_siteMediterranean Maquis_Givat Yearim
## -1.61670666
## unit_siteMediterranean Maquis_Givat Yeshayahu
## -1.83283889
## unit_siteMediterranean Maquis_Goren
## -1.07703944
## unit_siteMediterranean Maquis_Iftach
## -0.76285032
## unit_siteMediterranean Maquis_Kerem Maharal
## -0.07049326
## unit_siteMediterranean Maquis_Kfar Shamai
## -1.74997830
## unit_siteMediterranean Maquis_Margaliot
## -15.57221256
## unit_siteMediterranean Maquis_Nehusha
## -1.19876710
## unit_siteMediterranean Maquis_Nir Etzion
## -1.48528310
## unit_siteMediterranean Maquis_Ofer
## -0.62979700
## unit_siteMediterranean Maquis_Ramat Raziel
## -1.02436171
## unit_siteMediterranean Maquis_Yagur
## -0.51086561
## unit_siteNegev Highlands_Ashalim
## -15.18842475
## unit_siteNegev Highlands_Bislach
## -14.33505511
## unit_siteNegev Highlands_Ezuz
## -14.24737938
## unit_siteNegev Highlands_Mashabei Sadeh
## -15.18842475
## unit_siteNegev Highlands_Merhav Am
## -14.36220367
## unit_siteNegev Highlands_Mitzpe Ramon
## -15.19592356
## unit_siteNegev Highlands_Sde Boker
## -14.44965039
## unit_siteNegev Highlands_Yeruham
## -14.40305327
## unit_sitePlanted Conifer Forest_Aderet
## -1.01230897
## unit_sitePlanted Conifer Forest_Amatzia
## -0.09672623
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -14.32318407
## unit_sitePlanted Conifer Forest_Eitanim
## -14.32278012
## unit_sitePlanted Conifer Forest_Elyakim
## -1.39106046
## unit_sitePlanted Conifer Forest_Eshtaol
## -14.38738854
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -0.91593828
## unit_sitePlanted Conifer Forest_Kabri
## -14.36918004
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 0.44415807
## unit_sitePlanted Conifer Forest_Manara
## -14.31001380
## unit_sitePlanted Conifer Forest_Meron
## -14.29066716
## unit_sitePlanted Conifer Forest_Ofer
## -0.60793387
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -0.52047432
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -0.46276265
## unit_sitePlanted Conifer Forest_Zuriel
## -1.10567700
## sin_td_rad
## 0.48182519
##
##
## *** individual model call ***
## Streptopelia.turtur ~ year_ct + unit_site + sin_td_rad
## <environment: 0x000002064b140ce0>
##
##
## *** individual model coefficients ***
## (Intercept)
## 0.80637979
## year_ct
## -0.18670047
## unit_siteArid South_Lotan
## -36.59950809
## unit_siteArid South_Paran
## -1.38323134
## unit_siteArid South_Samar
## -1.64576761
## unit_siteArid South_Yahel
## -1.70397767
## unit_siteArid South_Yotvata
## -0.52886216
## unit_siteArid South_Zofar
## -1.07441464
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -36.60156632
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## -2.88378416
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -1.38358996
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -1.07350156
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 0.42340289
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -1.39230749
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -0.62253723
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -1.76037723
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -2.84394732
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -36.60487327
## unit_siteInland Sands_Beer Milka
## -36.18020959
## unit_siteInland Sands_Secher
## -36.12507027
## unit_siteInland Sands_Shunra East
## -36.14672385
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## -1.87658743
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## -1.61519315
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## -1.71335370
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## -38.00001532
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## -2.19039940
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -1.39181371
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -38.32437760
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -2.26130717
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -2.75678220
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## -3.00976859
## unit_siteMediterranean-Desert Transition Zone_Dvir
## -1.77395578
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## -0.28405361
## unit_siteMediterranean-Desert Transition Zone_Lahav
## -0.35564382
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## -3.21652911
## unit_siteMediterranean-Desert Transition Zone_Meitar
## -1.53962120
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## -0.11765013
## unit_siteMediterranean Maquis_Abirim
## -0.83188428
## unit_siteMediterranean Maquis_Aderet
## -2.08345977
## unit_siteMediterranean Maquis_Beit Oren
## -2.02501265
## unit_siteMediterranean Maquis_Ein Yaakov
## -1.61712639
## unit_siteMediterranean Maquis_Givat Yearim
## -1.61670684
## unit_siteMediterranean Maquis_Givat Yeshayahu
## -1.83283883
## unit_siteMediterranean Maquis_Goren
## -1.07703935
## unit_siteMediterranean Maquis_Iftach
## -0.76284990
## unit_siteMediterranean Maquis_Kerem Maharal
## -0.07049291
## unit_siteMediterranean Maquis_Kfar Shamai
## -1.74997817
## unit_siteMediterranean Maquis_Margaliot
## -37.80035619
## unit_siteMediterranean Maquis_Nehusha
## -1.19876669
## unit_siteMediterranean Maquis_Nir Etzion
## -1.48528316
## unit_siteMediterranean Maquis_Ofer
## -0.62979676
## unit_siteMediterranean Maquis_Ramat Raziel
## -1.02436151
## unit_siteMediterranean Maquis_Yagur
## -0.51086508
## unit_siteNegev Highlands_Ashalim
## -37.41656833
## unit_siteNegev Highlands_Bislach
## -36.56319722
## unit_siteNegev Highlands_Ezuz
## -36.47552163
## unit_siteNegev Highlands_Mashabei Sadeh
## -37.41656825
## unit_siteNegev Highlands_Merhav Am
## -36.59034586
## unit_siteNegev Highlands_Mitzpe Ramon
## -37.42406709
## unit_siteNegev Highlands_Sde Boker
## -36.67779271
## unit_siteNegev Highlands_Yeruham
## -36.63119561
## unit_sitePlanted Conifer Forest_Aderet
## -1.01230838
## unit_sitePlanted Conifer Forest_Amatzia
## -0.09672561
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -36.55132654
## unit_sitePlanted Conifer Forest_Eitanim
## -36.55092217
## unit_sitePlanted Conifer Forest_Elyakim
## -1.39106022
## unit_sitePlanted Conifer Forest_Eshtaol
## -36.61553062
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -0.91593770
## unit_sitePlanted Conifer Forest_Kabri
## -36.59732210
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 0.44415777
## unit_sitePlanted Conifer Forest_Manara
## -36.53815585
## unit_sitePlanted Conifer Forest_Meron
## -36.51880922
## unit_sitePlanted Conifer Forest_Ofer
## -0.60793360
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -0.52047412
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -0.46276193
## unit_sitePlanted Conifer Forest_Zuriel
## -1.10567664
## sin_td_rad
## 0.48182524
##
##
## [1] "RESULTS FOR Streptopelia turtur"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.01
## 3: unit_site 0.01
## 4: sin_td_rad 0.94
## [1] "change in Streptopelia turtur abundance over monitoring period: -81.3682709630183 %"Acridotheres tristis
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## -16.891497439
## year_ct
## 0.213879053
## unit_siteArid South_Lotan
## -0.103855431
## unit_siteArid South_Paran
## 0.049948459
## unit_siteArid South_Samar
## 1.167991995
## unit_siteArid South_Yahel
## 1.371886479
## unit_siteArid South_Yotvata
## 0.206879654
## unit_siteArid South_Zofar
## -0.323856311
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -0.097967440
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 0.188621829
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## 0.048822008
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## 0.008021082
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## -0.013691844
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -0.078365411
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -0.031237725
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -0.017679295
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -0.116378012
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -0.085768982
## unit_siteInland Sands_Beer Milka
## -0.692380587
## unit_siteInland Sands_Secher
## -0.885519099
## unit_siteInland Sands_Shunra East
## -0.809672306
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 13.687424111
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 13.918143858
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 13.367971710
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 2.601334636
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 13.008162190
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 12.277780514
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 3.737489851
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## 0.060766284
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 0.200751020
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 14.014397208
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 1.617001300
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 13.818889568
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 13.582188997
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 14.505696194
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 0.796189153
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 11.903072524
## unit_siteMediterranean Maquis_Abirim
## -0.265350059
## unit_siteMediterranean Maquis_Aderet
## 14.747188271
## unit_siteMediterranean Maquis_Beit Oren
## 14.393847042
## unit_siteMediterranean Maquis_Ein Yaakov
## 10.902096045
## unit_siteMediterranean Maquis_Givat Yearim
## 13.036478943
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 15.175475920
## unit_siteMediterranean Maquis_Goren
## 12.419737391
## unit_siteMediterranean Maquis_Iftach
## 0.191877434
## unit_siteMediterranean Maquis_Kerem Maharal
## 14.907889982
## unit_siteMediterranean Maquis_Kfar Shamai
## 11.456244534
## unit_siteMediterranean Maquis_Margaliot
## 1.901981464
## unit_siteMediterranean Maquis_Nehusha
## 14.707841332
## unit_siteMediterranean Maquis_Nir Etzion
## 14.779071452
## unit_siteMediterranean Maquis_Ofer
## 14.676547072
## unit_siteMediterranean Maquis_Ramat Raziel
## 14.557380538
## unit_siteMediterranean Maquis_Yagur
## 13.692520510
## unit_siteNegev Highlands_Ashalim
## 0.557673913
## unit_siteNegev Highlands_Bislach
## -0.231177599
## unit_siteNegev Highlands_Ezuz
## -0.540974863
## unit_siteNegev Highlands_Mashabei Sadeh
## 0.557673913
## unit_siteNegev Highlands_Merhav Am
## -0.135948466
## unit_siteNegev Highlands_Mitzpe Ramon
## 0.583940298
## unit_siteNegev Highlands_Sde Boker
## -0.146504275
## unit_siteNegev Highlands_Yeruham
## -0.307207691
## unit_sitePlanted Conifer Forest_Aderet
## 0.031513311
## unit_sitePlanted Conifer Forest_Amatzia
## 0.296418484
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -0.184607363
## unit_sitePlanted Conifer Forest_Eitanim
## -0.191900719
## unit_sitePlanted Conifer Forest_Elyakim
## -0.097005143
## unit_sitePlanted Conifer Forest_Eshtaol
## 0.040283993
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -0.038278987
## unit_sitePlanted Conifer Forest_Kabri
## -0.024116999
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -0.203749145
## unit_sitePlanted Conifer Forest_Manara
## -0.230739344
## unit_sitePlanted Conifer Forest_Meron
## -0.301259144
## unit_sitePlanted Conifer Forest_Ofer
## -0.249115428
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -0.159103348
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -0.239837916
## unit_sitePlanted Conifer Forest_Zuriel
## -0.037557115
## sin_td_rad
## -1.687706612
##
##
## *** individual model call ***
## Acridotheres.tristis ~ year_ct + unit_site + sin_td_rad
## <environment: 0x0000020647c88850>
##
##
## *** individual model coefficients ***
## (Intercept)
## -38.92288826
## year_ct
## 0.21387900
## unit_siteArid South_Lotan
## -0.24367876
## unit_siteArid South_Paran
## -0.07731804
## unit_siteArid South_Samar
## 0.97121044
## unit_siteArid South_Yahel
## 1.17511156
## unit_siteArid South_Yotvata
## 0.07715237
## unit_siteArid South_Zofar
## -0.45419077
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -0.20236644
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 0.08140709
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -0.05464419
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -0.10659225
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## -0.12592253
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -0.17942521
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -0.13287021
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -0.12799657
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -0.22469797
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -0.19165378
## unit_siteInland Sands_Beer Milka
## -0.86638891
## unit_siteInland Sands_Secher
## -1.02866725
## unit_siteInland Sands_Shunra East
## -0.95502299
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 35.71877826
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 35.94950138
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 35.39932356
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 2.46859375
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 35.03952083
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 34.30912420
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 3.54079191
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -0.08828794
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 0.07035342
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 36.04575206
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 1.42023436
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 35.85023778
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 35.61353673
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 36.53704219
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 0.59939550
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 33.93442532
## unit_siteMediterranean Maquis_Abirim
## -0.38219534
## unit_siteMediterranean Maquis_Aderet
## 36.77855110
## unit_siteMediterranean Maquis_Beit Oren
## 36.42519664
## unit_siteMediterranean Maquis_Ein Yaakov
## 32.93344444
## unit_siteMediterranean Maquis_Givat Yearim
## 35.06782975
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 37.20682936
## unit_siteMediterranean Maquis_Goren
## 34.45108562
## unit_siteMediterranean Maquis_Iftach
## 0.09065513
## unit_siteMediterranean Maquis_Kerem Maharal
## 36.93925153
## unit_siteMediterranean Maquis_Kfar Shamai
## 33.48759065
## unit_siteMediterranean Maquis_Margaliot
## 1.70522379
## unit_siteMediterranean Maquis_Nehusha
## 36.73920396
## unit_siteMediterranean Maquis_Nir Etzion
## 36.81043559
## unit_siteMediterranean Maquis_Ofer
## 36.70789533
## unit_siteMediterranean Maquis_Ramat Raziel
## 36.58873893
## unit_siteMediterranean Maquis_Yagur
## 35.72387072
## unit_siteNegev Highlands_Ashalim
## 0.36087250
## unit_siteNegev Highlands_Bislach
## -0.34191215
## unit_siteNegev Highlands_Ezuz
## -0.68664347
## unit_siteNegev Highlands_Mashabei Sadeh
## 0.36087250
## unit_siteNegev Highlands_Merhav Am
## -0.27923838
## unit_siteNegev Highlands_Mitzpe Ramon
## 0.38713974
## unit_siteNegev Highlands_Sde Boker
## -0.26062548
## unit_siteNegev Highlands_Yeruham
## -0.44341386
## unit_sitePlanted Conifer Forest_Aderet
## -0.09350432
## unit_sitePlanted Conifer Forest_Amatzia
## 0.15879408
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -0.32452268
## unit_sitePlanted Conifer Forest_Eitanim
## -0.31693779
## unit_sitePlanted Conifer Forest_Elyakim
## -0.21959547
## unit_sitePlanted Conifer Forest_Eshtaol
## -0.08095388
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -0.15435989
## unit_sitePlanted Conifer Forest_Kabri
## -0.15620989
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -0.33150174
## unit_sitePlanted Conifer Forest_Manara
## -0.36302261
## unit_sitePlanted Conifer Forest_Meron
## -0.42493383
## unit_sitePlanted Conifer Forest_Ofer
## -0.37781813
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -0.27956124
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -0.37338660
## unit_sitePlanted Conifer Forest_Zuriel
## -0.15408232
## sin_td_rad
## -1.68776153
##
##
## [1] "RESULTS FOR Acridotheres tristis"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.01
## 3: unit_site 0.01
## 4: sin_td_rad 0.22
## [1] "change in Acridotheres tristis abundance over monitoring period: 585.453877038889 %"Turdus merula
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## -15.157373851
## year_ct
## -0.012221042
## unit_siteArid South_Lotan
## 0.047162015
## unit_siteArid South_Paran
## 0.016039807
## unit_siteArid South_Samar
## 0.050925986
## unit_siteArid South_Yahel
## 0.116257315
## unit_siteArid South_Yotvata
## 0.065975325
## unit_siteArid South_Zofar
## -0.023330082
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## 13.453479078
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 13.959106847
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## 15.015212435
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## 14.078082963
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 13.297373246
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## 15.245309304
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## 14.994887952
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## 13.482693424
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 14.470904057
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## 15.593604391
## unit_siteInland Sands_Beer Milka
## 0.020091549
## unit_siteInland Sands_Secher
## -0.041793379
## unit_siteInland Sands_Shunra East
## -0.017490751
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 0.177795383
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 0.085401733
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 0.091245748
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 0.510193824
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 0.217726919
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 0.039672722
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 0.874237657
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## 0.099909668
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 0.074528306
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 13.338307882
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 0.194796354
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 13.414149379
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 13.928100839
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 13.543664780
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 14.747304467
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 0.017051907
## unit_siteMediterranean Maquis_Abirim
## 16.513737010
## unit_siteMediterranean Maquis_Aderet
## 16.323509340
## unit_siteMediterranean Maquis_Beit Oren
## 16.608560968
## unit_siteMediterranean Maquis_Ein Yaakov
## 16.390587527
## unit_siteMediterranean Maquis_Givat Yearim
## 16.345268102
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 16.358303104
## unit_siteMediterranean Maquis_Goren
## 16.358017685
## unit_siteMediterranean Maquis_Iftach
## 16.055291704
## unit_siteMediterranean Maquis_Kerem Maharal
## 16.356494610
## unit_siteMediterranean Maquis_Kfar Shamai
## 15.983812199
## unit_siteMediterranean Maquis_Margaliot
## 15.612445122
## unit_siteMediterranean Maquis_Nehusha
## 15.497055323
## unit_siteMediterranean Maquis_Nir Etzion
## 15.768522043
## unit_siteMediterranean Maquis_Ofer
## 16.244368667
## unit_siteMediterranean Maquis_Ramat Raziel
## 16.713347350
## unit_siteMediterranean Maquis_Yagur
## 16.741320146
## unit_siteNegev Highlands_Ashalim
## -0.144630510
## unit_siteNegev Highlands_Bislach
## 0.006409004
## unit_siteNegev Highlands_Ezuz
## -0.092898631
## unit_siteNegev Highlands_Mashabei Sadeh
## -0.144630510
## unit_siteNegev Highlands_Merhav Am
## 0.036878850
## unit_siteNegev Highlands_Mitzpe Ramon
## -0.136214305
## unit_siteNegev Highlands_Sde Boker
## -0.023377595
## unit_siteNegev Highlands_Yeruham
## -0.075675289
## unit_sitePlanted Conifer Forest_Aderet
## 16.122840461
## unit_sitePlanted Conifer Forest_Amatzia
## 15.629715499
## unit_sitePlanted Conifer Forest_Bat Shlomo
## 16.195971705
## unit_sitePlanted Conifer Forest_Eitanim
## 16.111508190
## unit_sitePlanted Conifer Forest_Elyakim
## 16.398101334
## unit_sitePlanted Conifer Forest_Eshtaol
## 16.238078776
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## 15.893135829
## unit_sitePlanted Conifer Forest_Kabri
## 15.721741377
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 16.304418931
## unit_sitePlanted Conifer Forest_Manara
## 15.824416830
## unit_sitePlanted Conifer Forest_Meron
## 15.327562824
## unit_sitePlanted Conifer Forest_Ofer
## 16.551872208
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## 16.246104948
## unit_sitePlanted Conifer Forest_Ramot Naftali
## 15.636940460
## unit_sitePlanted Conifer Forest_Zuriel
## 15.915420631
## sin_td_rad
## -0.540770465
##
##
## *** individual model call ***
## Turdus.merula ~ year_ct + unit_site + sin_td_rad
## <environment: 0x000002064f710608>
##
##
## *** individual model coefficients ***
## (Intercept)
## -33.743379120
## year_ct
## -0.012221070
## unit_siteArid South_Lotan
## 0.145675965
## unit_siteArid South_Paran
## 0.115384575
## unit_siteArid South_Samar
## 0.149856416
## unit_siteArid South_Yahel
## 0.215187813
## unit_siteArid South_Yotvata
## 0.164786690
## unit_siteArid South_Zofar
## 0.076439769
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## 32.039484077
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 32.545111959
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## 33.601217419
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## 32.664087961
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 31.883378269
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## 33.831314369
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## 33.580892933
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## 32.068698453
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 33.056909006
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## 34.179609303
## unit_siteInland Sands_Beer Milka
## 0.118868832
## unit_siteInland Sands_Secher
## 0.058038810
## unit_siteInland Sands_Shunra East
## 0.082191055
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 0.267466458
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 0.185140042
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 0.191653676
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 0.596930127
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 0.309385946
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 0.136135474
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 0.973168948
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## 0.193873726
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 0.171470787
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 31.924312951
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 0.293726934
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 32.000154363
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 32.514105787
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 32.129669665
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 33.333309307
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 0.115957933
## unit_siteMediterranean Maquis_Abirim
## 35.099742136
## unit_siteMediterranean Maquis_Aderet
## 34.909514496
## unit_siteMediterranean Maquis_Beit Oren
## 35.194566053
## unit_siteMediterranean Maquis_Ein Yaakov
## 34.976592597
## unit_siteMediterranean Maquis_Givat Yearim
## 34.931273112
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 34.944308073
## unit_siteMediterranean Maquis_Goren
## 34.944022758
## unit_siteMediterranean Maquis_Iftach
## 34.641296780
## unit_siteMediterranean Maquis_Kerem Maharal
## 34.942499702
## unit_siteMediterranean Maquis_Kfar Shamai
## 34.569817251
## unit_siteMediterranean Maquis_Margaliot
## 34.198450333
## unit_siteMediterranean Maquis_Nehusha
## 34.083060466
## unit_siteMediterranean Maquis_Nir Etzion
## 34.354527185
## unit_siteMediterranean Maquis_Ofer
## 34.830373657
## unit_siteMediterranean Maquis_Ramat Raziel
## 35.299352421
## unit_siteMediterranean Maquis_Yagur
## 35.327325194
## unit_siteNegev Highlands_Ashalim
## -0.045700285
## unit_siteNegev Highlands_Bislach
## 0.103141113
## unit_siteNegev Highlands_Ezuz
## 0.004058391
## unit_siteNegev Highlands_Mashabei Sadeh
## -0.045700285
## unit_siteNegev Highlands_Merhav Am
## 0.134183266
## unit_siteNegev Highlands_Mitzpe Ramon
## -0.037284071
## unit_siteNegev Highlands_Sde Boker
## 0.071700765
## unit_siteNegev Highlands_Yeruham
## 0.022640234
## unit_sitePlanted Conifer Forest_Aderet
## 34.708845638
## unit_sitePlanted Conifer Forest_Amatzia
## 34.215720679
## unit_sitePlanted Conifer Forest_Bat Shlomo
## 34.781976772
## unit_sitePlanted Conifer Forest_Eitanim
## 34.697513210
## unit_sitePlanted Conifer Forest_Elyakim
## 34.984106360
## unit_sitePlanted Conifer Forest_Eshtaol
## 34.824083876
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## 34.479140840
## unit_sitePlanted Conifer Forest_Kabri
## 34.307746531
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 34.890423975
## unit_sitePlanted Conifer Forest_Manara
## 34.410421850
## unit_sitePlanted Conifer Forest_Meron
## 33.913567800
## unit_sitePlanted Conifer Forest_Ofer
## 35.137877255
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## 34.832109980
## unit_sitePlanted Conifer Forest_Ramot Naftali
## 34.222945506
## unit_sitePlanted Conifer Forest_Zuriel
## 34.501425689
## sin_td_rad
## -0.540771031
##
##
## [1] "RESULTS FOR Turdus merula"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.02
## 3: unit_site 0.01
## 4: sin_td_rad 0.03
## [1] "change in Turdus merula abundance over monitoring period: -10.4156574223421 %"Spilopelia senegalensis
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## -1.21452796
## year_ct
## -0.08479296
## unit_siteArid South_Lotan
## 1.34302032
## unit_siteArid South_Paran
## 0.13977719
## unit_siteArid South_Samar
## 1.07858514
## unit_siteArid South_Yahel
## 1.76131776
## unit_siteArid South_Yotvata
## 1.96323285
## unit_siteArid South_Zofar
## 0.63792162
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -13.12066640
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## -13.13523737
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -13.12809665
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -13.12655205
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## -13.12510914
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -13.12160020
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -13.12400734
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -13.12492326
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -13.11982954
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -13.12125806
## unit_siteInland Sands_Beer Milka
## -12.94250054
## unit_siteInland Sands_Secher
## -12.93263538
## unit_siteInland Sands_Shunra East
## -12.93650949
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## -13.14112261
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 1.36496435
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## -1.23157471
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## -13.62781642
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 1.73145817
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -13.11910428
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -13.68584917
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -13.12870674
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -13.21140180
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 0.83737865
## unit_siteMediterranean-Desert Transition Zone_Dvir
## -13.57753845
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 1.63210056
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 0.94685106
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 1.09017873
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 2.26072696
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 1.05648179
## unit_siteMediterranean Maquis_Abirim
## 0.86411415
## unit_siteMediterranean Maquis_Aderet
## 2.56133091
## unit_siteMediterranean Maquis_Beit Oren
## 1.06704589
## unit_siteMediterranean Maquis_Ein Yaakov
## 1.29630395
## unit_siteMediterranean Maquis_Givat Yearim
## 1.44756259
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 2.12189918
## unit_siteMediterranean Maquis_Goren
## 0.21225393
## unit_siteMediterranean Maquis_Iftach
## 0.40034328
## unit_siteMediterranean Maquis_Kerem Maharal
## 1.51050311
## unit_siteMediterranean Maquis_Kfar Shamai
## 0.85967795
## unit_siteMediterranean Maquis_Margaliot
## 0.53026866
## unit_siteMediterranean Maquis_Nehusha
## 1.63638210
## unit_siteMediterranean Maquis_Nir Etzion
## 1.67257023
## unit_siteMediterranean Maquis_Ofer
## 2.14357684
## unit_siteMediterranean Maquis_Ramat Raziel
## 2.08336627
## unit_siteMediterranean Maquis_Yagur
## 2.41708222
## unit_siteNegev Highlands_Ashalim
## 0.19346835
## unit_siteNegev Highlands_Bislach
## 0.70603125
## unit_siteNegev Highlands_Ezuz
## 1.82727231
## unit_siteNegev Highlands_Mashabei Sadeh
## 1.89821644
## unit_siteNegev Highlands_Merhav Am
## 0.89105403
## unit_siteNegev Highlands_Mitzpe Ramon
## 0.88527389
## unit_siteNegev Highlands_Sde Boker
## 0.26442373
## unit_siteNegev Highlands_Yeruham
## 0.02800091
## unit_sitePlanted Conifer Forest_Aderet
## -13.11325418
## unit_sitePlanted Conifer Forest_Amatzia
## -13.12596975
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -13.10139981
## unit_sitePlanted Conifer Forest_Eitanim
## -13.10132754
## unit_sitePlanted Conifer Forest_Elyakim
## -13.10587438
## unit_sitePlanted Conifer Forest_Eshtaol
## -13.11288686
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -13.10908598
## unit_sitePlanted Conifer Forest_Kabri
## -13.10962911
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -13.10046914
## unit_sitePlanted Conifer Forest_Manara
## -13.09904348
## unit_sitePlanted Conifer Forest_Meron
## -13.09558210
## unit_sitePlanted Conifer Forest_Ofer
## -13.09811736
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -13.10270251
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -13.09857874
## unit_sitePlanted Conifer Forest_Zuriel
## -13.10891088
## sin_td_rad
## 0.08620500
##
##
## *** individual model call ***
## Spilopelia.senegalensis ~ year_ct + unit_site + sin_td_rad
## <environment: 0x000002064f5c1e30>
##
##
## *** individual model coefficients ***
## (Intercept)
## -1.21452039
## year_ct
## -0.08479297
## unit_siteArid South_Lotan
## 1.34302047
## unit_siteArid South_Paran
## 0.13977757
## unit_siteArid South_Samar
## 1.07858453
## unit_siteArid South_Yahel
## 1.76131559
## unit_siteArid South_Yotvata
## 1.96323369
## unit_siteArid South_Zofar
## 0.63792065
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -31.61390166
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## -31.62744849
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -31.61935300
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -31.62144568
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## -31.61951558
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -31.61434832
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -31.61660983
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -31.61949795
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## -31.61331213
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -31.61453653
## unit_siteInland Sands_Beer Milka
## -31.43241078
## unit_siteInland Sands_Secher
## -31.42351142
## unit_siteInland Sands_Shunra East
## -31.42739727
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## -31.63468458
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 1.36496460
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## -1.23157792
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## -32.10905437
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 1.73146312
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -31.61275090
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -32.17294402
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -31.61669592
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -31.70785157
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 0.83738035
## unit_siteMediterranean-Desert Transition Zone_Dvir
## -32.06461703
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 1.63210486
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 0.94685312
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 1.09018069
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 2.26072921
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 1.05648340
## unit_siteMediterranean Maquis_Abirim
## 0.86411356
## unit_siteMediterranean Maquis_Aderet
## 2.56132929
## unit_siteMediterranean Maquis_Beit Oren
## 1.06704557
## unit_siteMediterranean Maquis_Ein Yaakov
## 1.29630332
## unit_siteMediterranean Maquis_Givat Yearim
## 1.44756404
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 2.12190111
## unit_siteMediterranean Maquis_Goren
## 0.21225138
## unit_siteMediterranean Maquis_Iftach
## 0.40034248
## unit_siteMediterranean Maquis_Kerem Maharal
## 1.51050126
## unit_siteMediterranean Maquis_Kfar Shamai
## 0.85967535
## unit_siteMediterranean Maquis_Margaliot
## 0.53026243
## unit_siteMediterranean Maquis_Nehusha
## 1.63638154
## unit_siteMediterranean Maquis_Nir Etzion
## 1.67257182
## unit_siteMediterranean Maquis_Ofer
## 2.14357691
## unit_siteMediterranean Maquis_Ramat Raziel
## 2.08336683
## unit_siteMediterranean Maquis_Yagur
## 2.41708738
## unit_siteNegev Highlands_Ashalim
## 0.19347242
## unit_siteNegev Highlands_Bislach
## 0.70603510
## unit_siteNegev Highlands_Ezuz
## 1.82727688
## unit_siteNegev Highlands_Mashabei Sadeh
## 1.89822052
## unit_siteNegev Highlands_Merhav Am
## 0.89105550
## unit_siteNegev Highlands_Mitzpe Ramon
## 0.88527776
## unit_siteNegev Highlands_Sde Boker
## 0.26442203
## unit_siteNegev Highlands_Yeruham
## 0.02800389
## unit_sitePlanted Conifer Forest_Aderet
## -31.61097293
## unit_sitePlanted Conifer Forest_Amatzia
## -31.61839165
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -31.59295595
## unit_sitePlanted Conifer Forest_Eitanim
## -31.59738885
## unit_sitePlanted Conifer Forest_Elyakim
## -31.59897415
## unit_sitePlanted Conifer Forest_Eshtaol
## -31.60580263
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -31.60588849
## unit_sitePlanted Conifer Forest_Kabri
## -31.60152698
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -31.59493630
## unit_sitePlanted Conifer Forest_Manara
## -31.59148807
## unit_sitePlanted Conifer Forest_Meron
## -31.59096465
## unit_sitePlanted Conifer Forest_Ofer
## -31.59172712
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -31.59692745
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -31.59086269
## unit_sitePlanted Conifer Forest_Zuriel
## -31.60192654
## sin_td_rad
## 0.08621794
##
##
## [1] "RESULTS FOR Spilopelia senegalensis"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.02
## 3: unit_site 0.01
## 4: sin_td_rad 1.00
## [1] "change in Spilopelia senegalensis abundance over monitoring period: -53.3798221530995 %"Parus major
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## -1.525002e+01
## year_ct
## -3.942317e-02
## unit_siteArid South_Lotan
## 9.237773e-02
## unit_siteArid South_Paran
## 2.430874e-02
## unit_siteArid South_Samar
## -6.425083e-03
## unit_siteArid South_Yahel
## 9.258837e-02
## unit_siteArid South_Yotvata
## 9.998894e-02
## unit_siteArid South_Zofar
## -1.445716e-02
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## 1.483740e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 1.252736e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## 1.500986e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## 1.309751e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 1.353768e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## 1.501932e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## 1.599815e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## 1.351710e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 1.489055e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## 1.533873e+01
## unit_siteInland Sands_Beer Milka
## 9.315379e-02
## unit_siteInland Sands_Secher
## -6.364373e-04
## unit_siteInland Sands_Shunra East
## 3.619562e-02
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 2.903602e-01
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 1.503323e-01
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 1.299272e-01
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 6.896222e-01
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 3.517876e-01
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 8.102727e-02
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 1.241352e+00
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## 1.723199e-01
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 1.129515e-01
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 1.180098e+01
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 2.116189e-01
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 1.430305e+01
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 1.328665e+01
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 1.131450e+01
## unit_siteMediterranean-Desert Transition Zone_Meitar
## -1.869767e-01
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 4.674410e-02
## unit_siteMediterranean Maquis_Abirim
## 1.553920e+01
## unit_siteMediterranean Maquis_Aderet
## 1.434494e+01
## unit_siteMediterranean Maquis_Beit Oren
## 1.567917e+01
## unit_siteMediterranean Maquis_Ein Yaakov
## 1.565216e+01
## unit_siteMediterranean Maquis_Givat Yearim
## 1.487003e+01
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 1.498815e+01
## unit_siteMediterranean Maquis_Goren
## 1.514040e+01
## unit_siteMediterranean Maquis_Iftach
## 1.477997e+01
## unit_siteMediterranean Maquis_Kerem Maharal
## 1.590139e+01
## unit_siteMediterranean Maquis_Kfar Shamai
## 1.482492e+01
## unit_siteMediterranean Maquis_Margaliot
## 1.557098e+01
## unit_siteMediterranean Maquis_Nehusha
## 1.421724e+01
## unit_siteMediterranean Maquis_Nir Etzion
## 1.445081e+01
## unit_siteMediterranean Maquis_Ofer
## 1.510822e+01
## unit_siteMediterranean Maquis_Ramat Raziel
## 1.492654e+01
## unit_siteMediterranean Maquis_Yagur
## 1.647390e+01
## unit_siteNegev Highlands_Ashalim
## -3.028024e-01
## unit_siteNegev Highlands_Bislach
## 3.061416e-02
## unit_siteNegev Highlands_Ezuz
## -1.198924e-01
## unit_siteNegev Highlands_Mashabei Sadeh
## -3.028024e-01
## unit_siteNegev Highlands_Merhav Am
## 7.679299e-02
## unit_siteNegev Highlands_Mitzpe Ramon
## -2.900471e-01
## unit_siteNegev Highlands_Sde Boker
## -2.945879e-02
## unit_siteNegev Highlands_Yeruham
## -1.087190e-01
## unit_sitePlanted Conifer Forest_Aderet
## 1.561405e+01
## unit_sitePlanted Conifer Forest_Amatzia
## 1.542199e+01
## unit_sitePlanted Conifer Forest_Bat Shlomo
## 1.534087e+01
## unit_sitePlanted Conifer Forest_Eitanim
## 1.522038e+01
## unit_sitePlanted Conifer Forest_Elyakim
## 1.568142e+01
## unit_sitePlanted Conifer Forest_Eshtaol
## 1.411235e+01
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## 1.571453e+01
## unit_sitePlanted Conifer Forest_Kabri
## 1.489644e+01
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 1.581094e+01
## unit_sitePlanted Conifer Forest_Manara
## 1.586992e+01
## unit_sitePlanted Conifer Forest_Meron
## 1.485054e+01
## unit_sitePlanted Conifer Forest_Ofer
## 1.600380e+01
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## 1.576767e+01
## unit_sitePlanted Conifer Forest_Ramot Naftali
## 1.544025e+01
## unit_sitePlanted Conifer Forest_Zuriel
## 1.583131e+01
## sin_td_rad
## -8.195693e-01
##
##
## *** individual model call ***
## Parus.major ~ year_ct + unit_site + sin_td_rad
## <environment: 0x000002064571bfa8>
##
##
## *** individual model coefficients ***
## (Intercept)
## -3.173382e+01
## year_ct
## -3.942313e-02
## unit_siteArid South_Lotan
## 8.757808e-02
## unit_siteArid South_Paran
## 2.191976e-02
## unit_siteArid South_Samar
## -9.697156e-03
## unit_siteArid South_Yahel
## 8.931630e-02
## unit_siteArid South_Yotvata
## 9.419704e-02
## unit_siteArid South_Zofar
## -1.355831e-02
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## 3.132120e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 2.901116e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## 3.149366e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## 2.958131e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 3.002148e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## 3.150313e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## 3.248195e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## 3.000090e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 3.137436e+01
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## 3.182254e+01
## unit_siteInland Sands_Beer Milka
## 8.939549e-02
## unit_siteInland Sands_Secher
## -8.836705e-04
## unit_siteInland Sands_Shunra East
## 3.567643e-02
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 2.752378e-01
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 1.481452e-01
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 1.372172e-01
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 6.584481e-01
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 3.402742e-01
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## 7.553532e-02
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## 1.238080e+00
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## 1.526528e-01
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## 1.080685e-01
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 2.828478e+01
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 2.083468e-01
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 3.078685e+01
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 2.977046e+01
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 2.779831e+01
## unit_siteMediterranean-Desert Transition Zone_Meitar
## -1.902488e-01
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 4.078162e-02
## unit_siteMediterranean Maquis_Abirim
## 3.202300e+01
## unit_siteMediterranean Maquis_Aderet
## 3.082874e+01
## unit_siteMediterranean Maquis_Beit Oren
## 3.216297e+01
## unit_siteMediterranean Maquis_Ein Yaakov
## 3.213596e+01
## unit_siteMediterranean Maquis_Givat Yearim
## 3.135383e+01
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 3.147195e+01
## unit_siteMediterranean Maquis_Goren
## 3.162420e+01
## unit_siteMediterranean Maquis_Iftach
## 3.126377e+01
## unit_siteMediterranean Maquis_Kerem Maharal
## 3.238519e+01
## unit_siteMediterranean Maquis_Kfar Shamai
## 3.130873e+01
## unit_siteMediterranean Maquis_Margaliot
## 3.205479e+01
## unit_siteMediterranean Maquis_Nehusha
## 3.070104e+01
## unit_siteMediterranean Maquis_Nir Etzion
## 3.093461e+01
## unit_siteMediterranean Maquis_Ofer
## 3.159202e+01
## unit_siteMediterranean Maquis_Ramat Raziel
## 3.141034e+01
## unit_siteMediterranean Maquis_Yagur
## 3.295770e+01
## unit_siteNegev Highlands_Ashalim
## -3.060745e-01
## unit_siteNegev Highlands_Bislach
## 2.707245e-02
## unit_siteNegev Highlands_Ezuz
## -1.286514e-01
## unit_siteNegev Highlands_Mashabei Sadeh
## -3.060745e-01
## unit_siteNegev Highlands_Merhav Am
## 6.679047e-02
## unit_siteNegev Highlands_Mitzpe Ramon
## -2.933192e-01
## unit_siteNegev Highlands_Sde Boker
## -3.938197e-02
## unit_siteNegev Highlands_Yeruham
## -1.170365e-01
## unit_sitePlanted Conifer Forest_Aderet
## 3.209785e+01
## unit_sitePlanted Conifer Forest_Amatzia
## 3.190579e+01
## unit_sitePlanted Conifer Forest_Bat Shlomo
## 3.182468e+01
## unit_sitePlanted Conifer Forest_Eitanim
## 3.170418e+01
## unit_sitePlanted Conifer Forest_Elyakim
## 3.216523e+01
## unit_sitePlanted Conifer Forest_Eshtaol
## 3.059616e+01
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## 3.219833e+01
## unit_sitePlanted Conifer Forest_Kabri
## 3.138024e+01
## unit_sitePlanted Conifer Forest_Kerem Maharal
## 3.229474e+01
## unit_sitePlanted Conifer Forest_Manara
## 3.235372e+01
## unit_sitePlanted Conifer Forest_Meron
## 3.133435e+01
## unit_sitePlanted Conifer Forest_Ofer
## 3.248760e+01
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## 3.225147e+01
## unit_sitePlanted Conifer Forest_Ramot Naftali
## 3.192405e+01
## unit_sitePlanted Conifer Forest_Zuriel
## 3.231511e+01
## sin_td_rad
## -8.195694e-01
##
##
## [1] "RESULTS FOR Parus major"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.04
## 3: unit_site 0.01
## 4: sin_td_rad 0.02
## [1] "change in Parus major abundance over monitoring period: -29.8692051588581 %"Passer domesticus
## Warning in RColorBrewer::brewer.pal(n, pal): n too large, allowed maximum for palette Dark2 is 8
## Returning the palette you asked for with that many colors
##
## *****
##
## num_plots num_sites num_units
## 1: 1595 70 8
## unit site
## 1: Arid South Ein Yahav
## 2: Arid South Lotan
## 3: Arid South Paran
## 4: Arid South Samar
## 5: Arid South Yahel
## 6: Arid South Yotvata
## 7: Arid South Zofar
## 8: Herbaceous and Dwarf-Shrub Vegetation Batot Taninim
## 9: Herbaceous and Dwarf-Shrub Vegetation Gamla
## 10: Herbaceous and Dwarf-Shrub Vegetation Hatzor
## 11: Herbaceous and Dwarf-Shrub Vegetation Karei Deshe
## 12: Herbaceous and Dwarf-Shrub Vegetation Natur
## 13: Herbaceous and Dwarf-Shrub Vegetation Ramat Hashofet
## 14: Herbaceous and Dwarf-Shrub Vegetation Sde Eliezer
## 15: Herbaceous and Dwarf-Shrub Vegetation Shaal
## 16: Herbaceous and Dwarf-Shrub Vegetation Yavneel
## 17: Herbaceous and Dwarf-Shrub Vegetation Yiron
## 18: Inland Sands Beer Milka
## 19: Inland Sands Secher
## 20: Inland Sands Shunra East
## 21: Loess Covered Areas in the Northern Negev Eshel Hanasi
## 22: Loess Covered Areas in the Northern Negev Givot Bar
## 23: Loess Covered Areas in the Northern Negev Givot Goral
## 24: Loess Covered Areas in the Northern Negev Hatzerim Base
## 25: Loess Covered Areas in the Northern Negev Mishmar Hanegev
## 26: Loess Covered Areas in the Northern Negev Nahal Ashan
## 27: Loess Covered Areas in the Northern Negev Nevatim Base
## 28: Loess Covered Areas in the Northern Negev Park Loess
## 29: Loess Covered Areas in the Northern Negev Sayeret Shaked
## 30: Mediterranean-Desert Transition Zone Beit Yatir
## 31: Mediterranean-Desert Transition Zone Dvir
## 32: Mediterranean-Desert Transition Zone Har Amasa
## 33: Mediterranean-Desert Transition Zone Lahav
## 34: Mediterranean-Desert Transition Zone Lehavim
## 35: Mediterranean-Desert Transition Zone Meitar
## 36: Mediterranean-Desert Transition Zone Mirsham
## 37: Mediterranean Maquis Aderet
## 38: Mediterranean Maquis Givat Yearim
## 39: Mediterranean Maquis Givat Yeshayahu
## 40: Mediterranean Maquis Nehusha
## 41: Mediterranean Maquis Ramat Raziel
## 42: Mediterranean Maquis Beit Oren
## 43: Mediterranean Maquis Kerem Maharal
## 44: Mediterranean Maquis Nir Etzion
## 45: Mediterranean Maquis Ofer
## 46: Mediterranean Maquis Yagur
## 47: Mediterranean Maquis Abirim
## 48: Mediterranean Maquis Ein Yaakov
## 49: Mediterranean Maquis Goren
## 50: Mediterranean Maquis Iftach
## 51: Mediterranean Maquis Kfar Shamai
## 52: Mediterranean Maquis Margaliot
## 53: Negev Highlands Ashalim
## 54: Negev Highlands Bislach
## 55: Negev Highlands Ezuz
## 56: Negev Highlands Mashabei Sadeh
## 57: Negev Highlands Merhav Am
## 58: Negev Highlands Mitzpe Ramon
## 59: Negev Highlands Sde Boker
## 60: Negev Highlands Yeruham
## 61: Planted Conifer Forest Aderet
## 62: Planted Conifer Forest Amatzia
## 63: Planted Conifer Forest Eitanim
## 64: Planted Conifer Forest Eshtaol
## 65: Planted Conifer Forest Givat Yeshayahu
## 66: Planted Conifer Forest Bat Shlomo
## 67: Planted Conifer Forest Elyakim
## 68: Planted Conifer Forest Kerem Maharal
## 69: Planted Conifer Forest Ofer
## 70: Planted Conifer Forest Ramat Hashofet
## 71: Planted Conifer Forest Kabri
## 72: Planted Conifer Forest Manara
## 73: Planted Conifer Forest Meron
## 74: Planted Conifer Forest Ramot Naftali
## 75: Planted Conifer Forest Zuriel
## unit site
##
##
## *****
##
##
##
## *** manyglm call ***
## spp_no_rare ~ year_ct + unit_site + sin_td_rad
##
##
## *** manyglm coefficients ***
## (Intercept)
## 0.48487187
## year_ct
## -0.04945968
## unit_siteArid South_Lotan
## -1.00335027
## unit_siteArid South_Paran
## -0.21988759
## unit_siteArid South_Samar
## 0.99529262
## unit_siteArid South_Yahel
## 0.74494283
## unit_siteArid South_Yotvata
## 0.42802220
## unit_siteArid South_Zofar
## 0.82872485
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -15.36223112
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 0.39267248
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -1.48348064
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -0.21949630
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 0.41947026
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -15.35710826
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -15.34390254
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -0.44988330
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 0.29193530
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -15.35898525
## unit_siteInland Sands_Beer Milka
## -0.01099236
## unit_siteInland Sands_Secher
## -15.36450270
## unit_siteInland Sands_Shunra East
## -15.34324906
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 0.27144511
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 2.43129537
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 0.87567660
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 0.72728942
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 1.74844127
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -0.75231515
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -14.83479927
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -15.31812135
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -3.93904785
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 1.21112692
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 1.09126017
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 0.72172856
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 0.56522656
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 1.08696102
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 1.07831828
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 1.12131722
## unit_siteMediterranean Maquis_Abirim
## -1.85838332
## unit_siteMediterranean Maquis_Aderet
## 0.81679278
## unit_siteMediterranean Maquis_Beit Oren
## -3.85059068
## unit_siteMediterranean Maquis_Ein Yaakov
## 1.00510556
## unit_siteMediterranean Maquis_Givat Yearim
## 0.12408251
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 0.68782691
## unit_siteMediterranean Maquis_Goren
## 0.55228452
## unit_siteMediterranean Maquis_Iftach
## -0.15413885
## unit_siteMediterranean Maquis_Kerem Maharal
## -0.54677428
## unit_siteMediterranean Maquis_Kfar Shamai
## 1.54115498
## unit_siteMediterranean Maquis_Margaliot
## 1.48127169
## unit_siteMediterranean Maquis_Nehusha
## -0.13956316
## unit_siteMediterranean Maquis_Nir Etzion
## -1.00566524
## unit_siteMediterranean Maquis_Ofer
## -0.08012877
## unit_siteMediterranean Maquis_Ramat Raziel
## 0.10327637
## unit_siteMediterranean Maquis_Yagur
## -2.61991093
## unit_siteNegev Highlands_Ashalim
## 0.59374680
## unit_siteNegev Highlands_Bislach
## 0.06634374
## unit_siteNegev Highlands_Ezuz
## 1.60411975
## unit_siteNegev Highlands_Mashabei Sadeh
## 1.76381806
## unit_siteNegev Highlands_Merhav Am
## 0.79528568
## unit_siteNegev Highlands_Mitzpe Ramon
## 1.53937676
## unit_siteNegev Highlands_Sde Boker
## 0.35272906
## unit_siteNegev Highlands_Yeruham
## 0.72128811
## unit_sitePlanted Conifer Forest_Aderet
## -15.29996721
## unit_sitePlanted Conifer Forest_Amatzia
## -15.23020886
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -15.36500099
## unit_sitePlanted Conifer Forest_Eitanim
## -15.36539747
## unit_sitePlanted Conifer Forest_Elyakim
## -15.34045327
## unit_sitePlanted Conifer Forest_Eshtaol
## -15.30198237
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -15.32283423
## unit_sitePlanted Conifer Forest_Kabri
## -15.31985456
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -15.37010675
## unit_sitePlanted Conifer Forest_Manara
## -15.37792801
## unit_sitePlanted Conifer Forest_Meron
## -15.39691731
## unit_sitePlanted Conifer Forest_Ofer
## -15.38300876
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -15.35785431
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -15.38047759
## unit_sitePlanted Conifer Forest_Zuriel
## -15.32379486
## sin_td_rad
## -0.47292589
##
##
## *** individual model call ***
## Passer.domesticus ~ year_ct + unit_site + sin_td_rad
## <environment: 0x0000020645849c90>
##
##
## *** individual model coefficients ***
## (Intercept)
## 0.48487416
## year_ct
## -0.04945919
## unit_siteArid South_Lotan
## -1.00335225
## unit_siteArid South_Paran
## -0.21988769
## unit_siteArid South_Samar
## 0.99529265
## unit_siteArid South_Yahel
## 0.74494235
## unit_siteArid South_Yotvata
## 0.42802226
## unit_siteArid South_Zofar
## 0.82872332
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Batot Taninim
## -31.77296567
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Gamla
## 0.39266961
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Hatzor
## -1.48348261
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Karei Deshe
## -0.21949923
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Natur
## 0.41946756
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Ramat Hashofet
## -31.76717390
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Sde Eliezer
## -31.76274725
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Shaal
## -0.44988646
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yavneel
## 0.29193247
## unit_siteHerbaceous and Dwarf-Shrub Vegetation_Yiron
## -31.77700125
## unit_siteInland Sands_Beer Milka
## -0.01099462
## unit_siteInland Sands_Secher
## -31.85045431
## unit_siteInland Sands_Shunra East
## -31.82779222
## unit_siteLoess Covered Areas in the Northern Negev_Eshel Hanasi
## 0.27144275
## unit_siteLoess Covered Areas in the Northern Negev_Givot Bar
## 2.43129398
## unit_siteLoess Covered Areas in the Northern Negev_Givot Goral
## 0.87567554
## unit_siteLoess Covered Areas in the Northern Negev_Hatzerim Base
## 0.72728486
## unit_siteLoess Covered Areas in the Northern Negev_Mishmar Hanegev
## 1.74843796
## unit_siteLoess Covered Areas in the Northern Negev_Nahal Ashan
## -0.75231569
## unit_siteLoess Covered Areas in the Northern Negev_Nevatim Base
## -31.32188035
## unit_siteLoess Covered Areas in the Northern Negev_Park Loess
## -31.76785611
## unit_siteLoess Covered Areas in the Northern Negev_Sayeret Shaked
## -3.93904905
## unit_siteMediterranean-Desert Transition Zone_Beit Yatir
## 1.21112404
## unit_siteMediterranean-Desert Transition Zone_Dvir
## 1.09125906
## unit_siteMediterranean-Desert Transition Zone_Har Amasa
## 0.72172629
## unit_siteMediterranean-Desert Transition Zone_Lahav
## 0.56522491
## unit_siteMediterranean-Desert Transition Zone_Lehavim
## 1.08695859
## unit_siteMediterranean-Desert Transition Zone_Meitar
## 1.07831927
## unit_siteMediterranean-Desert Transition Zone_Mirsham
## 1.12131534
## unit_siteMediterranean Maquis_Abirim
## -1.85838683
## unit_siteMediterranean Maquis_Aderet
## 0.81679056
## unit_siteMediterranean Maquis_Beit Oren
## -3.85059269
## unit_siteMediterranean Maquis_Ein Yaakov
## 1.00510345
## unit_siteMediterranean Maquis_Givat Yearim
## 0.12407963
## unit_siteMediterranean Maquis_Givat Yeshayahu
## 0.68782437
## unit_siteMediterranean Maquis_Goren
## 0.55228120
## unit_siteMediterranean Maquis_Iftach
## -0.15413897
## unit_siteMediterranean Maquis_Kerem Maharal
## -0.54677567
## unit_siteMediterranean Maquis_Kfar Shamai
## 1.54115384
## unit_siteMediterranean Maquis_Margaliot
## 1.48126985
## unit_siteMediterranean Maquis_Nehusha
## -0.13956609
## unit_siteMediterranean Maquis_Nir Etzion
## -1.00566802
## unit_siteMediterranean Maquis_Ofer
## -0.08013051
## unit_siteMediterranean Maquis_Ramat Raziel
## 0.10327245
## unit_siteMediterranean Maquis_Yagur
## -2.61991257
## unit_siteNegev Highlands_Ashalim
## 0.59374840
## unit_siteNegev Highlands_Bislach
## 0.06634283
## unit_siteNegev Highlands_Ezuz
## 1.60411902
## unit_siteNegev Highlands_Mashabei Sadeh
## 1.76381965
## unit_siteNegev Highlands_Merhav Am
## 0.79528479
## unit_siteNegev Highlands_Mitzpe Ramon
## 1.53937829
## unit_siteNegev Highlands_Sde Boker
## 0.35272801
## unit_siteNegev Highlands_Yeruham
## 0.72128820
## unit_sitePlanted Conifer Forest_Aderet
## -31.75732171
## unit_sitePlanted Conifer Forest_Amatzia
## -31.70906693
## unit_sitePlanted Conifer Forest_Bat Shlomo
## -31.84142742
## unit_sitePlanted Conifer Forest_Eitanim
## -31.84392447
## unit_sitePlanted Conifer Forest_Elyakim
## -31.81821791
## unit_sitePlanted Conifer Forest_Eshtaol
## -31.77613917
## unit_sitePlanted Conifer Forest_Givat Yeshayahu
## -31.76873017
## unit_sitePlanted Conifer Forest_Kabri
## -31.77422301
## unit_sitePlanted Conifer Forest_Kerem Maharal
## -31.85098822
## unit_sitePlanted Conifer Forest_Manara
## -31.85242539
## unit_sitePlanted Conifer Forest_Meron
## -31.87895904
## unit_sitePlanted Conifer Forest_Ofer
## -31.86121267
## unit_sitePlanted Conifer Forest_Ramat Hashofet
## -31.84416501
## unit_sitePlanted Conifer Forest_Ramot Naftali
## -31.85499026
## unit_sitePlanted Conifer Forest_Zuriel
## -31.78027327
## sin_td_rad
## -0.47292157
##
##
## [1] "RESULTS FOR Passer domesticus"
## [1] "P-values"
## term p
## 1: (Intercept) NA
## 2: year_ct 0.32
## 3: unit_site 0.01
## 4: sin_td_rad 0.94
## [1] "change in Passer domesticus abundance over monitoring period: -35.9260785009912 %"Session information
## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 4.2.3 (2023-03-15 ucrt)
## os Windows 10 x64 (build 22631)
## system x86_64, mingw32
## ui RTerm
## language (EN)
## collate Hebrew_Israel.utf8
## ctype Hebrew_Israel.utf8
## tz Asia/Jerusalem
## date 2024-03-21
## pandoc 3.1.1 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## abind 1.4-7 2017-09-03 [1] R-Forge (R 4.2.3)
## alabama 2023.1.0 2023-08-22 [1] CRAN (R 4.2.3)
## betareg 3.2-0 2021-02-09 [1] R-Forge (R 4.2.3)
## boot 1.3-28.1 2022-11-22 [1] CRAN (R 4.2.3)
## bslib 0.4.2 2022-12-16 [1] CRAN (R 4.2.3)
## cachem 1.0.7 2023-02-24 [1] CRAN (R 4.2.3)
## Cairo * 1.6-0 2022-07-05 [1] CRAN (R 4.2.2)
## callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.3)
## car * 3.1-2 2023-03-30 [1] CRAN (R 4.2.3)
## carData * 3.0-5 2022-01-06 [1] CRAN (R 4.2.3)
## cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.2.3)
## cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.3)
## cluster 2.1.4 2022-08-22 [1] CRAN (R 4.2.3)
## coda 0.19-4 2020-09-30 [1] CRAN (R 4.2.3)
## codetools 0.2-19 2023-02-01 [1] CRAN (R 4.2.2)
## colorspace 2.1-1 2023-03-08 [1] R-Forge (R 4.2.2)
## crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.3)
## data.table * 1.14.8 2023-02-17 [1] CRAN (R 4.2.3)
## devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.2.3)
## digest 0.6.31 2022-12-11 [1] CRAN (R 4.2.3)
## doParallel 1.0.17 2022-02-07 [1] CRAN (R 4.2.3)
## dplyr * 1.1.1 2023-03-22 [1] CRAN (R 4.2.3)
## ecoCopula * 1.0.2 2022-03-02 [1] CRAN (R 4.2.3)
## ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.3)
## emmeans * 1.8.6 2023-05-11 [1] CRAN (R 4.2.3)
## estimability 1.4.1 2022-08-05 [1] CRAN (R 4.2.1)
## evaluate 0.20 2023-01-17 [1] CRAN (R 4.2.3)
## extrafont * 0.19 2023-01-18 [1] CRAN (R 4.2.2)
## extrafontdb 1.0 2012-06-11 [1] CRAN (R 4.2.0)
## fansi 1.0.4 2023-01-22 [1] CRAN (R 4.2.3)
## farver 2.1.1 2022-07-06 [1] CRAN (R 4.2.3)
## fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.2.3)
## flexmix 2.3-19 2023-03-16 [1] CRAN (R 4.2.3)
## foreach 1.5.2 2022-02-02 [1] CRAN (R 4.2.3)
## Formula 1.2-6 2023-02-25 [1] R-Forge (R 4.2.2)
## fs 1.6.1 2023-02-06 [1] CRAN (R 4.2.3)
## generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.3)
## ggnewscale * 0.4.9 2023-05-25 [1] CRAN (R 4.2.3)
## ggplot2 * 3.5.0 2024-02-23 [1] CRAN (R 4.2.3)
## gllvm * 1.4.1 2023-01-07 [1] CRAN (R 4.2.3)
## glm2 1.2.1 2018-08-11 [1] CRAN (R 4.2.0)
## glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.3)
## gtable 0.3.3 2023-03-21 [1] CRAN (R 4.2.3)
## highr 0.10 2022-12-22 [1] CRAN (R 4.2.3)
## htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.2.3)
## htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.2.3)
## httpuv 1.6.9 2023-02-14 [1] CRAN (R 4.2.3)
## interactions * 1.1.5 2021-07-02 [1] CRAN (R 4.2.3)
## iterators 1.0.14 2022-02-05 [1] CRAN (R 4.2.3)
## jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.2.3)
## jsonlite 1.8.4 2022-12-06 [1] CRAN (R 4.2.3)
## jtools * 2.2.1 2022-12-02 [1] CRAN (R 4.2.3)
## kableExtra * 1.4.0 2024-01-24 [1] CRAN (R 4.2.3)
## knitr 1.42 2023-01-25 [1] CRAN (R 4.2.3)
## labeling 0.4.2 2020-10-20 [1] CRAN (R 4.2.0)
## later 1.3.0 2021-08-18 [1] CRAN (R 4.2.3)
## lattice * 0.21-8 2023-04-05 [1] CRAN (R 4.2.3)
## lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.3)
## lme4 * 1.1-32 2023-03-14 [1] CRAN (R 4.2.3)
## lmtest 0.9-40 2022-03-21 [1] CRAN (R 4.2.3)
## lubridate * 1.9.2 2023-02-10 [1] CRAN (R 4.2.3)
## magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.3)
## MASS * 7.3-58.3 2023-03-07 [1] CRAN (R 4.2.3)
## Matrix * 1.5-5 2023-04-05 [1] R-Forge (R 4.2.3)
## memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.3)
## mgcv 1.8-42 2023-03-02 [1] CRAN (R 4.2.3)
## mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
## miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.3)
## minqa 1.2.5 2022-10-19 [1] CRAN (R 4.2.3)
## modeltools 0.2-23 2020-03-05 [1] CRAN (R 4.2.0)
## multcomp 1.4-23 2023-03-09 [1] CRAN (R 4.2.3)
## munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.3)
## mvabund * 4.2.1 2022-02-16 [1] CRAN (R 4.2.3)
## mvtnorm 1.2-0 2023-04-05 [1] R-Forge (R 4.2.3)
## nlme 3.1-162 2023-01-31 [1] CRAN (R 4.2.3)
## nloptr 2.0.3 2022-05-26 [1] CRAN (R 4.2.3)
## nnet 7.3-18 2022-09-28 [1] CRAN (R 4.2.3)
## numDeriv 2022.9-1 2022-09-27 [1] R-Forge (R 4.2.1)
## ordinal 2022.11-16 2022-11-16 [1] CRAN (R 4.2.3)
## pander 0.6.5 2022-03-18 [1] CRAN (R 4.2.3)
## permute * 0.9-7 2022-01-27 [1] CRAN (R 4.2.3)
## pillar 1.9.0 2023-03-22 [1] CRAN (R 4.2.3)
## pkgbuild 1.4.2.9000 2023-07-11 [1] Github (r-lib/pkgbuild@7048654)
## pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.3)
## pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.2.3)
## prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.3)
## processx 3.8.0 2022-10-26 [1] CRAN (R 4.2.3)
## profvis 0.3.7 2020-11-02 [1] CRAN (R 4.2.3)
## promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.3)
## ps 1.7.4 2023-04-02 [1] CRAN (R 4.2.3)
## purrr 1.0.1 2023-01-10 [1] CRAN (R 4.2.3)
## R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.3)
## RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.2.0)
## Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.2.3)
## readxl * 1.4.2 2023-02-09 [1] CRAN (R 4.2.3)
## remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.3)
## rlang * 1.1.0 2023-03-14 [1] CRAN (R 4.2.3)
## rmarkdown 2.21 2023-03-26 [1] CRAN (R 4.2.3)
## rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.3)
## Rttf2pt1 1.3.12 2023-01-22 [1] CRAN (R 4.2.2)
## sandwich 3.1-0 2023-04-04 [1] R-Forge (R 4.2.3)
## sass 0.4.5 2023-01-24 [1] CRAN (R 4.2.3)
## scales 1.3.0 2023-11-28 [1] CRAN (R 4.2.3)
## sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.3)
## shiny 1.7.4 2022-12-15 [1] CRAN (R 4.2.3)
## solartime * 0.0.2 2021-04-22 [1] CRAN (R 4.2.3)
## statmod 1.5.0 2023-01-06 [1] CRAN (R 4.2.3)
## stringi 1.7.12 2023-01-11 [1] CRAN (R 4.2.2)
## stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.3)
## survival 3.5-5 2023-03-12 [1] CRAN (R 4.2.3)
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## systemfonts 1.0.4 2022-02-11 [1] CRAN (R 4.2.3)
## TH.data 1.1-2 2022-11-07 [1] R-Forge (R 4.2.3)
## tibble 3.2.1 2023-03-20 [1] CRAN (R 4.2.3)
## tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.3)
## timechange 0.2.0 2023-01-11 [1] CRAN (R 4.2.3)
## TMB * 1.9.6 2023-08-11 [1] CRAN (R 4.2.3)
## tweedie 2.3.5 2022-08-17 [1] CRAN (R 4.2.3)
## ucminf 1.1-4.1 2022-09-29 [1] CRAN (R 4.2.1)
## urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.2.3)
## usethis * 2.1.6 2022-05-25 [1] CRAN (R 4.2.3)
## utf8 1.2.3 2023-01-31 [1] CRAN (R 4.2.3)
## vctrs 0.6.1 2023-03-22 [1] CRAN (R 4.2.3)
## vegan * 2.6-4 2022-10-11 [1] CRAN (R 4.2.3)
## viridisLite 0.4.1 2022-08-22 [1] CRAN (R 4.2.3)
## withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.3)
## xfun 0.38 2023-03-24 [1] CRAN (R 4.2.3)
## xml2 1.3.3 2021-11-30 [1] CRAN (R 4.2.3)
## xtable 1.8-6 2020-06-19 [1] R-Forge (R 4.2.3)
## yaml 2.3.7 2023-01-23 [1] CRAN (R 4.2.3)
## zoo 1.8-11 2022-09-17 [1] CRAN (R 4.2.3)
##
## [1] C:/Users/Ron Chen/AppData/Local/R/win-library/4.2.3
## [2] C:/Program Files/R/R-4.2.3/library
##
## ──────────────────────────────────────────────────────────────────────────────