Banner, Katharine M., Kathryn M. Irvine, Thomas J. Rodhouse, Wilson J.
Wright, Roger M. Rodriguez, and Andrea R. Litt. 2018. “Improving
Geographically-Extensive Acoustic Survey Designs for Modeling Species
Occurrence with Imperfect Detection and Misidentification.”
Ecology and Evolution 8 (12): 6144–56.
Chambert, Thierry, David A. W. Miller, and James D. Nichols. 2015.
“Modeling False Positive Detections in Species Occurrence Data
Under Different Study Designs.” Ecology 96 (2): 332–39.
Chambert, Thierry, J. Hardin Waddle, David A. W. Miller, Susan C. Walls,
and James D. Nichols. 2018.
“A New Framework for Analysing
Automated Acoustic Species Detection Data: Occupancy Estimation and
Optimization of Recordings Post-Processing.” Methods in
Ecology and Evolution 9 (3): 560–70. https://doi.org/
https://doi.org/10.1111/2041-210X.12910.
Clement, Matthew J., Thomas J. Rodhouse, Patricia C. Ormsbee, Joseph M.
Szewczak, and James D. Nichols. 2014.
“Accounting for
False-Positive Acoustic Detections of Bats Using Occupancy
Models.” Journal of Applied Ecology 51: 1460–67.
https://doi.org/doi:10.1111/1365-2664.12303.
Clement, Matthew J., J. Andrew Royle, and Ronald J. Mixan. 2022.
“Estimating Occupancy from Autonomous Recording Unit Data in the
Presence of Misclassifications and Detection Heterogeneity.”
Methods in Ecology and Evolution 13 (8): 1719–29.
https://doi.org/
https://doi.org/10.1111/2041-210X.13895.
Fiske, Ian, and Richard Chandler. 2011.
“Unmarked: An r Package
for Fitting Hierarchical Models of Wildlife Occurance and
Abundance.” Journal of Statistical Software 43 (10):
1–23.
http://www.jstatsoft.org/v43/i10/.
Kahle, David, and Hadley Wickham. 2013.
“Ggmap: Spatial
Visualization with Ggplot2.” The R Journal 5 (1):
144–61.
http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf.
Larsen, David P., Anthony R. Olsen, and Jr. Donald L. Stevens. 2008.
“Using a Master Sample to Integrate Stream Monitoring
Programs.” Journal of Agricultural, Biological, and
Environmental Statistics 13 (3): 243–54.
Loeb, Susan C., Thomas J. Rodhouse, Laura E. Ellison, Cori L. Lausen,
Jonathan D. Reichard, Kathryn M. Irvine, Thomas E. Ingersoll, et al.
2015. “A Plan for the North American Bat Monitoring Program
(NABat).” Report SRS-208. United States Deparment of Agriculture.
MacKenzie, Darryl I., James D. Nichols, Gideon B. Lachman, Sam Droege,
Andrew J. Royle, and Catherine A. Langtimm. 2002. “Estimating Site
Occupancy Rates When Detection Probabilities Are Less Than One.”
Ecology 83 (8): 2248–55.
MacKenzie, Darryl I., James D. Nichols, James E. Hines abd Melinda G.
Knutson, and Alan B. Franklin. 2003. “Estimating Site Occupancy,
Colonization, and Local Extinction When a Species Is Detected
Imperfectly.” Ecology 84 (8): 2200–2207.
Miller, David A. W., James D. Nichols, Justin A. Gude, Lindsey N. Rich,
Kevin M. Podruzny, James E. Hines, and Michael S. Mitchell. 2013.
“Determining Occurrence Dynamics When False Positivies Occur:
Estimating the Range Dynamics of Wolves from Public Survey Data.”
Plos One 8 (6): 1–9.
Miller, David A., James D. Nichols, Brett T. McClintock, Evan H.
Campbell, Larissa L. Bailey, and Linda A. Weir. 2011. “Improving
Occupancy Estimation When Two Types of Observational Error Occur:
Non-Detection and Species Identification.” Ecology 97
(2): 1422–28.
R Core Team. 2016.
R: A Language and Environment for Statistical
Computing. Vienna, Austria: R Foundation for Statistical Computing.
https://www.R-project.org/.
Rodhouse, Thomas J., Patricia C. Ormsbee, Kathryn M. Irvine, Lee A.
Vierling, Joseph M. Szewczak, and Kerri T. Vierling. 2012.
“Assessing the Status and Trend of Bat Populations Across Broad
Geographic Regions with Dynamic Distribution Models.”
Ecological Applications 22 (4): 1098–1113.
———. 2015. “Establishing Conservation Baselines with Dynamic
Distribution Models for Bat Populations Facing Imminent Decline.”
Diversity and Distributions, 1–13.
Royle, Andrew J., and William A. Link. 2006. “Generalized Site
Occupancy Models Allowing for False Positive and False Negative
Errors.” Ecology 87 (4): 835–41.
Ruiz-Gutierrez, Viviana, Mevin B. Hooten, and Evan H. Campbell Grant.
2016. “Uncertainty in Biological Monitoring: A Framework for Data
Collection and Analysis to Account for Multiple Sources of Sampling
Bias.” Methods in Ecology and Evolution 7: 900–909.
Spiers, Anna I., J. Andrew Royle, Christa L. Torrens, and Maxwell B.
Joseph. 2022.
“Estimating Species Misclassification with Occupancy
Dynamics and Encounter Rates: A Semi-Supervised, Individual-Level
Approach.” Methods in Ecology and Evolution 13 (7):
1528–39. https://doi.org/
https://doi.org/10.1111/2041-210X.13858.
Stratton, Christian, Kathryn M. Irvine, Katharine M. Banner, Wilson J.
Wright, Cori Lausen, and Jason Rae. 2022.
“Coupling Validation
Effort with in Situ Bioacoustic Data Improves Estimating Relative
Activity and Occupancy for Multiple Species with Cross-Species
Misclassifications.” Methods in Ecology and Evolution 13
(6): 1288–1303. https://doi.org/
https://doi.org/10.1111/2041-210X.13831.
Wickham, Hadley. 2009.
Ggplot2: Elegant Graphics for Data
Analysis. Springer New York.
http://had.co.nz/ggplot2/book.
Wright, Wilson J., Kathryn M. Irvine, Emily S. Almberg, and Andrea R.
Litt. 2020.
“Modelling Misclassification in Multi‐species Acoustic
Data When Estimating Occupancy and Relative Activity.”
Methods in Ecology and Evolution 11: 71–81.
DOI:
10.1111/2041-210X.13315.
Wright, Wilson J., Kathryn M. Irvine, and Thomas J. Rodhouse. 2016.
“A Goodness-of-Fit Test for Ocupancy Models with Correlated
Within-Season Revisits.” Ecology and Evolution 6 (15):
5404–15.