Installation of special packages

Required packages

require(BiocManager)

## Loading required package: BiocManager

require(devtools)

## Loading required package: devtools

## Loading required package: usethis

## 
## Attaching package: 'devtools'

## The following object is masked from 'package:BiocManager':
## 
##     install

LEA

• https://pubmed.ncbi.nlm.nih.gov/33638893/
• https://bioconductor.org/packages/release/bioc/html/LEA.html

if(!nzchar(system.file(package = "LEA"))) {
  BiocManager::install("LEA")
}

pcaMethods

• https://academic.oup.com/bioinformatics/article/23/9/1164/272597
• https://www.bioconductor.org/packages/release/bioc/html/pcaMethods.html

if(!nzchar(system.file(package = "pcaMethods"))) {
  BiocManager::install("pcaMethods")
}

GAPIT

• https://www.sciencedirect.com/science/article/pii/S1672022921001777
• https://github.com/jiabowang/GAPIT

if(!nzchar(system.file(package = "GAPIT"))) {
  devtools::install_github("jiabowang/GAPIT")
}