A-Maine-Tank-2022_Abiotic
McMahon
2023-10-11
this script will aim to assess the differences between abiotic factors in treatment tanks.
Set up
read in relevant files
I took the dfs Diana sent me and read them in here.
make changes
temp.ph$Tank<-as.factor(temp.ph$Tank)
temp.ph$pH_Treatment<-as.factor(temp.ph$pH_Treatment)
temp.ph$Temp_Treatment<-as.factor(temp.ph$Temp_Treatment)
levels(temp.ph$Tank)## [1] "H1" "H10" "H11" "H12" "H13" "H14" "H15" "H16" "H2" "H3" "H4" "H5"
## [13] "H6" "H7" "H8" "H9"levels(temp.ph$pH_Treatment)## [1] "7.4" "7.6" "7.8" "Ambient"levels(temp.ph$Temp_Treatment)## [1] "6" "9" "12"analyze
##
## Descriptive statistics by group
## Tank: H1
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## pH_Treatment* 3 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## Temp_Treatment* 4 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## DIC 5 20 2100.29 45.50 2106.30 2100.95 53.82 2021.30 2166.00
## TA 6 20 2118.57 57.57 2135.00 2119.47 58.41 2033.30 2202.40
## pHinsi_DIC_TA 7 20 7.59 0.07 7.58 7.59 0.08 7.43 7.70
## OmegaAragonite 8 20 0.72 0.13 0.69 0.72 0.15 0.47 0.93
## OmegaCalcite 9 20 1.14 0.20 1.09 1.14 0.23 0.75 1.47
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 12.09 0.56 11.90 12.06 0.30 11.00 13.20
## YSI_Salinity_psu 12 21 30.58 1.65 31.45 30.66 1.51 28.05 32.47
## YSI_DO_percent 13 21 98.95 12.01 101.60 98.94 15.86 79.20 117.40
## YSI_pH 14 21 7.58 0.09 7.56 7.57 0.04 7.48 7.94
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 144.70 -0.22 -1.37 10.17
## TA 169.10 -0.29 -1.53 12.87
## pHinsi_DIC_TA 0.26 -0.24 -0.89 0.02
## OmegaAragonite 0.46 -0.01 -1.28 0.03
## OmegaCalcite 0.72 -0.01 -1.27 0.05
## CO3 0.00 0.00 -1.28 0.00
## YSI_Temp_C 2.20 0.43 -0.66 0.12
## YSI_Salinity_psu 4.42 -0.21 -1.80 0.36
## YSI_DO_percent 38.20 -0.02 -1.54 2.62
## YSI_pH 0.46 2.77 8.34 0.02
## ------------------------------------------------------------
## Tank: H10
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## pH_Treatment* 3 21 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 1986.41 44.33 1999.95 1989.39 39.88 1897.50 2045.20
## TA 6 20 2115.12 60.10 2130.50 2116.35 65.31 2026.30 2198.90
## pHinsi_DIC_TA 7 20 8.00 0.05 8.00 8.00 0.05 7.88 8.12
## OmegaAragonite 8 20 1.53 0.21 1.52 1.53 0.22 1.10 1.92
## OmegaCalcite 9 20 2.43 0.33 2.43 2.44 0.34 1.75 3.06
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 9.14 0.36 9.10 9.16 0.44 8.50 9.70
## YSI_Salinity_psu 12 21 30.55 1.65 31.50 30.62 1.30 28.13 32.38
## YSI_DO_percent 13 20 102.30 8.58 104.05 102.99 8.60 83.10 113.90
## YSI_pH 14 21 8.01 0.09 8.00 8.01 0.07 7.87 8.29
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 147.70 -0.49 -1.15 9.91
## TA 172.60 -0.32 -1.51 13.44
## pHinsi_DIC_TA 0.24 -0.11 0.03 0.01
## OmegaAragonite 0.82 -0.13 -0.82 0.05
## OmegaCalcite 1.31 -0.12 -0.73 0.07
## CO3 0.00 -0.14 -0.87 0.00
## YSI_Temp_C 1.20 -0.22 -1.15 0.08
## YSI_Salinity_psu 4.25 -0.20 -1.83 0.36
## YSI_DO_percent 30.80 -0.56 -0.74 1.92
## YSI_pH 0.42 1.13 1.94 0.02
## ------------------------------------------------------------
## Tank: H11
## vars n mean sd median trimmed mad min max
## Date* 1 22 10.55 6.42 10.50 10.50 8.15 1.00 21.00
## Tank* 2 22 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## pH_Treatment* 3 22 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## Temp_Treatment* 4 22 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## DIC 5 21 1990.75 40.49 2003.20 1993.51 41.96 1907.00 2046.90
## TA 6 21 2120.96 56.50 2141.00 2122.89 52.34 2030.60 2193.20
## pHinsi_DIC_TA 7 21 8.05 0.05 8.06 8.05 0.04 7.93 8.12
## OmegaAragonite 8 21 1.52 0.21 1.56 1.53 0.20 1.08 1.83
## OmegaCalcite 9 21 2.42 0.33 2.47 2.44 0.32 1.73 2.92
## CO3 10 21 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 22 6.21 0.60 6.00 6.23 0.59 4.70 7.30
## YSI_Salinity_psu 12 21 30.55 1.65 31.48 30.63 1.35 27.90 32.39
## YSI_DO_percent 13 21 99.39 9.70 96.60 99.18 13.94 86.00 115.50
## YSI_pH 14 22 8.04 0.10 8.02 8.03 0.07 7.89 8.28
## range skew kurtosis se
## Date* 20.00 0.03 -1.40 1.37
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 139.90 -0.55 -0.91 8.84
## TA 162.60 -0.41 -1.48 12.33
## pHinsi_DIC_TA 0.19 -0.81 0.13 0.01
## OmegaAragonite 0.76 -0.51 -0.67 0.05
## OmegaCalcite 1.19 -0.52 -0.59 0.07
## CO3 0.00 -0.50 -0.73 0.00
## YSI_Temp_C 2.60 -0.31 -0.19 0.13
## YSI_Salinity_psu 4.49 -0.23 -1.78 0.36
## YSI_DO_percent 29.50 0.10 -1.44 2.12
## YSI_pH 0.39 1.07 1.04 0.02
## ------------------------------------------------------------
## Tank: H12
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## pH_Treatment* 3 21 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 1989.20 41.81 1996.90 1991.51 45.37 1908.70 2044.90
## TA 6 20 2119.32 57.54 2133.15 2120.64 63.31 2029.40 2195.50
## pHinsi_DIC_TA 7 20 8.01 0.05 8.02 8.01 0.03 7.89 8.12
## OmegaAragonite 8 20 1.54 0.22 1.55 1.54 0.26 1.13 1.92
## OmegaCalcite 9 20 2.44 0.34 2.46 2.46 0.39 1.80 3.07
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 8.67 0.30 8.60 8.65 0.30 8.20 9.20
## YSI_Salinity_psu 12 21 30.52 1.65 31.45 30.57 1.41 28.12 32.40
## YSI_DO_percent 13 21 95.41 8.39 96.80 95.64 8.15 78.60 109.30
## YSI_pH 14 21 8.02 0.08 8.00 8.01 0.07 7.87 8.24
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 136.20 -0.43 -1.15 9.35
## TA 166.10 -0.35 -1.52 12.87
## pHinsi_DIC_TA 0.23 -0.28 0.22 0.01
## OmegaAragonite 0.80 -0.18 -0.98 0.05
## OmegaCalcite 1.27 -0.18 -0.89 0.08
## CO3 0.00 -0.19 -1.03 0.00
## YSI_Temp_C 1.00 0.24 -1.05 0.06
## YSI_Salinity_psu 4.28 -0.17 -1.86 0.36
## YSI_DO_percent 30.70 -0.27 -0.83 1.83
## YSI_pH 0.37 0.77 0.97 0.02
## ------------------------------------------------------------
## Tank: H13
## vars n mean sd median trimmed mad min max
## Date* 1 22 10.55 6.42 10.50 10.50 8.15 1.00 21.00
## Tank* 2 22 5.00 0.00 5.00 5.00 0.00 5.00 5.00
## pH_Treatment* 3 22 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## Temp_Treatment* 4 22 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## DIC 5 21 2155.67 58.99 2172.00 2156.47 47.89 2059.30 2252.30
## TA 6 21 2120.70 55.98 2147.60 2122.28 47.29 2029.60 2195.50
## pHinsi_DIC_TA 7 21 7.40 0.06 7.39 7.40 0.04 7.32 7.60
## OmegaAragonite 8 21 0.47 0.07 0.46 0.46 0.06 0.38 0.73
## OmegaCalcite 9 21 0.75 0.12 0.72 0.73 0.08 0.61 1.16
## CO3 10 21 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 22 11.54 0.85 11.60 11.58 0.67 9.90 12.80
## YSI_Salinity_psu 12 21 30.54 1.61 31.63 30.61 1.08 28.08 32.36
## YSI_DO_percent 13 21 96.78 11.33 94.50 96.81 8.45 75.00 118.10
## YSI_pH 14 22 7.45 0.08 7.43 7.44 0.07 7.35 7.61
## range skew kurtosis se
## Date* 20.00 0.03 -1.40 1.37
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 193.00 -0.28 -1.38 12.87
## TA 165.90 -0.38 -1.47 12.22
## pHinsi_DIC_TA 0.28 1.53 2.79 0.01
## OmegaAragonite 0.35 1.92 4.65 0.02
## OmegaCalcite 0.55 1.98 4.88 0.03
## CO3 0.00 1.80 4.17 0.00
## YSI_Temp_C 2.90 -0.54 -0.61 0.18
## YSI_Salinity_psu 4.28 -0.23 -1.79 0.35
## YSI_DO_percent 43.10 0.12 -0.83 2.47
## YSI_pH 0.26 0.76 -0.61 0.02
## ------------------------------------------------------------
## Tank: H14
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 6.00 0.00 6.00 6.00 0.00 6.00 6.00
## pH_Treatment* 3 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 2164.01 58.52 2167.20 2161.26 82.51 2084.80 2266.70
## TA 6 20 2119.79 55.10 2135.75 2120.91 56.93 2032.20 2195.70
## pHinsi_DIC_TA 7 20 7.40 0.06 7.39 7.40 0.06 7.29 7.56
## OmegaAragonite 8 20 0.43 0.06 0.42 0.42 0.07 0.31 0.57
## OmegaCalcite 9 20 0.68 0.09 0.67 0.67 0.10 0.49 0.92
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 9.00 0.83 9.10 9.11 0.74 6.00 10.00
## YSI_Salinity_psu 12 21 30.59 1.60 31.55 30.65 1.47 28.23 32.54
## YSI_DO_percent 13 21 94.94 8.85 96.20 95.14 7.71 78.70 111.50
## YSI_pH 14 21 7.39 0.08 7.39 7.39 0.04 7.24 7.59
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 181.90 0.14 -1.39 13.08
## TA 163.50 -0.30 -1.52 12.32
## pHinsi_DIC_TA 0.27 0.46 0.18 0.01
## OmegaAragonite 0.27 0.37 0.02 0.01
## OmegaCalcite 0.42 0.43 0.14 0.02
## CO3 0.00 0.32 -0.07 0.00
## YSI_Temp_C 4.00 -2.12 5.53 0.18
## YSI_Salinity_psu 4.31 -0.18 -1.85 0.35
## YSI_DO_percent 32.80 -0.19 -0.78 1.93
## YSI_pH 0.35 0.31 0.48 0.02
## ------------------------------------------------------------
## Tank: H15
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 7.00 0.00 7.00 7.00 0.00 7.00 7.00
## pH_Treatment* 3 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## Temp_Treatment* 4 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## DIC 5 20 2182.24 63.19 2199.10 2182.75 80.21 2087.80 2286.80
## TA 6 20 2121.64 54.59 2140.60 2122.78 53.08 2035.70 2197.90
## pHinsi_DIC_TA 7 20 7.39 0.08 7.39 7.39 0.07 7.19 7.53
## OmegaAragonite 8 20 0.37 0.06 0.37 0.37 0.04 0.22 0.52
## OmegaCalcite 9 20 0.59 0.10 0.59 0.59 0.07 0.35 0.83
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 6.18 0.56 6.30 6.15 0.74 5.30 7.50
## YSI_Salinity_psu 12 21 30.60 1.61 31.58 30.66 1.23 28.16 32.41
## YSI_DO_percent 13 21 94.85 7.73 94.50 95.38 8.30 73.80 109.90
## YSI_pH 14 21 7.37 0.09 7.38 7.37 0.07 7.23 7.57
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 199.00 -0.11 -1.51 14.13
## TA 162.20 -0.30 -1.50 12.21
## pHinsi_DIC_TA 0.34 -0.50 0.10 0.02
## OmegaAragonite 0.30 -0.05 0.70 0.01
## OmegaCalcite 0.48 -0.05 0.63 0.02
## CO3 0.00 -0.06 0.74 0.00
## YSI_Temp_C 2.20 0.44 -0.62 0.12
## YSI_Salinity_psu 4.25 -0.18 -1.86 0.35
## YSI_DO_percent 36.10 -0.66 0.71 1.69
## YSI_pH 0.34 0.08 -0.81 0.02
## ------------------------------------------------------------
## Tank: H16
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 8.00 0.00 8.00 8.00 0.00 8.00 8.00
## pH_Treatment* 3 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 2163.48 63.10 2166.40 2159.07 68.72 2059.80 2325.30
## TA 6 20 2120.44 55.12 2139.95 2121.38 51.00 2033.60 2194.10
## pHinsi_DIC_TA 7 20 7.41 0.14 7.45 7.43 0.10 6.97 7.58
## OmegaAragonite 8 20 0.46 0.12 0.48 0.46 0.11 0.16 0.65
## OmegaCalcite 9 20 0.72 0.19 0.76 0.73 0.17 0.25 1.04
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 9.35 0.25 9.30 9.35 0.30 8.90 9.80
## YSI_Salinity_psu 12 21 30.52 1.62 31.51 30.57 1.38 28.09 32.44
## YSI_DO_percent 13 20 106.03 6.13 106.10 106.21 5.34 92.90 119.20
## YSI_pH 14 21 7.40 0.14 7.41 7.42 0.10 6.98 7.64
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 265.50 0.61 0.09 14.11
## TA 160.50 -0.30 -1.54 12.33
## pHinsi_DIC_TA 0.61 -1.54 2.66 0.03
## OmegaAragonite 0.50 -0.53 -0.05 0.03
## OmegaCalcite 0.79 -0.54 -0.03 0.04
## CO3 0.00 -0.52 -0.07 0.00
## YSI_Temp_C 0.90 -0.11 -0.89 0.05
## YSI_Salinity_psu 4.35 -0.17 -1.86 0.35
## YSI_DO_percent 26.30 -0.15 -0.30 1.37
## YSI_pH 0.66 -1.15 2.09 0.03
## ------------------------------------------------------------
## Tank: H2
## vars n mean sd median trimmed mad min max
## Date* 1 22 10.55 6.42 10.50 10.50 8.15 1.00 21.00
## Tank* 2 22 9.00 0.00 9.00 9.00 0.00 9.00 9.00
## pH_Treatment* 3 22 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## Temp_Treatment* 4 22 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 21 2103.05 47.51 2101.00 2104.73 62.27 2027.10 2162.60
## TA 6 21 2123.44 59.59 2144.40 2124.27 54.86 2037.40 2202.60
## pHinsi_DIC_TA 7 21 7.64 0.06 7.62 7.64 0.06 7.48 7.75
## OmegaAragonite 8 21 0.71 0.13 0.70 0.72 0.14 0.46 0.97
## OmegaCalcite 9 21 1.14 0.20 1.10 1.14 0.21 0.73 1.53
## CO3 10 21 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 22 8.99 0.33 8.95 8.96 0.30 8.60 9.70
## YSI_Salinity_psu 12 21 30.62 1.68 31.48 30.69 1.57 28.08 32.54
## YSI_DO_percent 13 21 96.71 8.05 95.80 96.05 8.90 85.80 118.40
## YSI_pH 14 22 7.63 0.10 7.61 7.62 0.04 7.49 7.96
## range skew kurtosis se
## Date* 20.00 0.03 -1.40 1.37
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 135.50 -0.23 -1.44 10.37
## TA 165.20 -0.36 -1.48 13.00
## pHinsi_DIC_TA 0.27 -0.36 0.01 0.01
## OmegaAragonite 0.51 0.01 -0.88 0.03
## OmegaCalcite 0.80 0.01 -0.86 0.04
## CO3 0.00 0.01 -0.90 0.00
## YSI_Temp_C 1.10 0.76 -0.56 0.07
## YSI_Salinity_psu 4.46 -0.20 -1.81 0.37
## YSI_DO_percent 32.60 0.67 0.27 1.76
## YSI_pH 0.47 1.78 3.57 0.02
## ------------------------------------------------------------
## Tank: H3
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 10.00 0.00 10.00 10.00 0.00 10.00 10.00
## pH_Treatment* 3 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## Temp_Treatment* 4 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## DIC 5 20 2101.42 42.48 2103.00 2100.20 51.89 2038.70 2171.10
## TA 6 20 2120.84 58.57 2136.90 2122.34 57.67 2030.00 2202.40
## pHinsi_DIC_TA 7 20 7.67 0.08 7.69 7.67 0.07 7.52 7.84
## OmegaAragonite 8 20 0.70 0.15 0.73 0.69 0.15 0.46 1.00
## OmegaCalcite 9 20 1.11 0.23 1.16 1.10 0.23 0.73 1.60
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 6.13 0.76 6.00 6.04 0.44 5.00 8.70
## YSI_Salinity_psu 12 21 30.59 1.62 31.46 30.66 1.42 28.18 32.42
## YSI_DO_percent 13 21 99.60 13.54 99.00 98.48 10.38 77.50 133.30
## YSI_pH 14 21 7.65 0.10 7.64 7.63 0.06 7.51 7.98
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 132.40 0.12 -1.34 9.50
## TA 172.40 -0.35 -1.53 13.10
## pHinsi_DIC_TA 0.31 -0.12 -0.99 0.02
## OmegaAragonite 0.55 0.13 -0.98 0.03
## OmegaCalcite 0.86 0.14 -0.97 0.05
## CO3 0.00 0.13 -0.99 0.00
## YSI_Temp_C 3.70 1.67 3.77 0.17
## YSI_Salinity_psu 4.24 -0.19 -1.82 0.35
## YSI_DO_percent 55.80 0.62 -0.01 2.95
## YSI_pH 0.47 1.51 2.80 0.02
## ------------------------------------------------------------
## Tank: H4
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 11.00 0.00 11.00 11.00 0.00 11.00 11.00
## pH_Treatment* 3 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 2098.40 42.39 2105.20 2099.41 51.22 2031.10 2160.60
## TA 6 20 2118.93 60.02 2135.30 2121.99 58.04 2011.50 2200.20
## pHinsi_DIC_TA 7 20 7.64 0.08 7.63 7.64 0.08 7.48 7.78
## OmegaAragonite 8 20 0.72 0.15 0.72 0.71 0.17 0.48 0.99
## OmegaCalcite 9 20 1.14 0.24 1.14 1.14 0.26 0.77 1.56
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 8.86 0.41 8.80 8.79 0.30 8.40 10.10
## YSI_Salinity_psu 12 21 30.56 1.62 31.46 30.63 1.38 28.16 32.39
## YSI_DO_percent 13 21 104.86 11.88 105.00 105.11 13.20 85.00 124.70
## YSI_pH 14 21 7.63 0.10 7.63 7.62 0.07 7.50 7.95
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 129.50 -0.27 -1.38 9.48
## TA 188.70 -0.40 -1.41 13.42
## pHinsi_DIC_TA 0.30 -0.21 -0.78 0.02
## OmegaAragonite 0.51 0.06 -1.13 0.03
## OmegaCalcite 0.80 0.06 -1.11 0.05
## CO3 0.00 0.06 -1.14 0.00
## YSI_Temp_C 1.70 1.55 1.95 0.09
## YSI_Salinity_psu 4.23 -0.20 -1.82 0.35
## YSI_DO_percent 39.70 -0.14 -1.14 2.59
## YSI_pH 0.45 1.36 2.41 0.02
## ------------------------------------------------------------
## Tank: H5
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 12.00 0.00 12.00 12.00 0.00 12.00 12.00
## pH_Treatment* 3 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## Temp_Treatment* 4 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## DIC 5 20 2034.32 50.47 2052.90 2039.94 45.52 1933.20 2086.80
## TA 6 20 2114.59 59.61 2128.65 2115.69 59.23 2025.30 2199.40
## pHinsi_DIC_TA 7 20 7.81 0.07 7.82 7.81 0.07 7.70 7.92
## OmegaAragonite 8 20 1.14 0.18 1.16 1.14 0.18 0.86 1.47
## OmegaCalcite 9 20 1.81 0.28 1.84 1.80 0.30 1.37 2.31
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 11.89 0.32 11.90 11.90 0.44 11.30 12.40
## YSI_Salinity_psu 12 21 30.53 1.65 31.38 30.59 1.51 28.08 32.40
## YSI_DO_percent 13 21 101.92 9.17 101.20 101.93 6.82 84.30 121.60
## YSI_pH 14 21 7.83 0.09 7.82 7.83 0.06 7.70 8.10
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 153.60 -0.66 -1.07 11.28
## TA 174.10 -0.28 -1.54 13.33
## pHinsi_DIC_TA 0.23 -0.06 -1.25 0.02
## OmegaAragonite 0.60 0.13 -0.99 0.04
## OmegaCalcite 0.94 0.11 -1.02 0.06
## CO3 0.00 0.15 -0.98 0.00
## YSI_Temp_C 1.10 -0.06 -1.20 0.07
## YSI_Salinity_psu 4.32 -0.18 -1.83 0.36
## YSI_DO_percent 37.30 0.08 -0.53 2.00
## YSI_pH 0.40 0.92 1.03 0.02
## ------------------------------------------------------------
## Tank: H6
## vars n mean sd median trimmed mad min max
## Date* 1 22 10.55 6.42 10.50 10.50 8.15 1.00 21.00
## Tank* 2 22 13.00 0.00 13.00 13.00 0.00 13.00 13.00
## pH_Treatment* 3 22 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## Temp_Treatment* 4 22 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 21 2041.47 53.73 2064.60 2046.93 36.62 1931.20 2097.80
## TA 6 21 2120.20 60.16 2142.40 2122.31 53.08 2026.30 2200.40
## pHinsi_DIC_TA 7 21 7.84 0.06 7.83 7.84 0.07 7.75 7.97
## OmegaAragonite 8 21 1.11 0.15 1.09 1.11 0.13 0.87 1.34
## OmegaCalcite 9 21 1.77 0.24 1.75 1.77 0.20 1.38 2.14
## CO3 10 21 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 22 9.22 0.39 9.30 9.22 0.52 8.60 9.80
## YSI_Salinity_psu 12 21 30.60 1.64 31.44 30.68 1.45 28.13 32.42
## YSI_DO_percent 13 21 98.71 11.04 100.00 98.96 11.27 77.20 119.80
## YSI_pH 14 22 7.85 0.10 7.84 7.84 0.08 7.73 8.13
## range skew kurtosis se
## Date* 20.00 0.03 -1.40 1.37
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 166.60 -0.67 -1.10 11.73
## TA 174.10 -0.41 -1.50 13.13
## pHinsi_DIC_TA 0.22 0.20 -0.91 0.01
## OmegaAragonite 0.47 -0.15 -1.15 0.03
## OmegaCalcite 0.76 -0.14 -1.15 0.05
## CO3 0.00 -0.16 -1.15 0.00
## YSI_Temp_C 1.20 -0.06 -1.33 0.08
## YSI_Salinity_psu 4.29 -0.20 -1.81 0.36
## YSI_DO_percent 42.60 -0.21 -0.75 2.41
## YSI_pH 0.40 0.98 0.69 0.02
## ------------------------------------------------------------
## Tank: H7
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 14.00 0.00 14.00 14.00 0.00 14.00 14.00
## pH_Treatment* 3 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## Temp_Treatment* 4 21 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## DIC 5 20 2037.94 46.35 2055.15 2041.80 39.66 1937.00 2099.70
## TA 6 20 2119.80 57.66 2132.25 2121.20 60.27 2035.00 2200.80
## pHinsi_DIC_TA 7 20 7.89 0.07 7.92 7.89 0.09 7.79 7.99
## OmegaAragonite 8 20 1.12 0.18 1.14 1.11 0.18 0.85 1.44
## OmegaCalcite 9 20 1.78 0.29 1.83 1.78 0.30 1.36 2.29
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 6.38 0.53 6.10 6.28 0.15 6.00 8.40
## YSI_Salinity_psu 12 21 30.57 1.64 31.43 30.64 1.45 28.10 32.41
## YSI_DO_percent 13 21 98.95 8.11 100.10 98.74 9.79 84.00 117.40
## YSI_pH 14 21 7.87 0.09 7.82 7.85 0.06 7.77 8.13
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 162.70 -0.57 -0.93 10.36
## TA 165.80 -0.29 -1.56 12.89
## pHinsi_DIC_TA 0.20 -0.11 -1.64 0.02
## OmegaAragonite 0.60 0.03 -1.19 0.04
## OmegaCalcite 0.93 0.02 -1.23 0.06
## CO3 0.00 0.03 -1.18 0.00
## YSI_Temp_C 2.40 2.55 7.02 0.12
## YSI_Salinity_psu 4.31 -0.20 -1.82 0.36
## YSI_DO_percent 33.40 0.19 -0.56 1.77
## YSI_pH 0.36 1.20 0.76 0.02
## ------------------------------------------------------------
## Tank: H8
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 15.00 0.00 15.00 15.00 0.00 15.00 15.00
## pH_Treatment* 3 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## Temp_Treatment* 4 21 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 20 2045.89 54.93 2070.85 2048.94 56.04 1937.20 2113.10
## TA 6 20 2117.98 57.35 2129.65 2119.08 59.30 2033.10 2199.90
## pHinsi_DIC_TA 7 20 7.82 0.06 7.81 7.82 0.07 7.72 7.94
## OmegaAragonite 8 20 1.06 0.15 1.02 1.05 0.14 0.87 1.34
## OmegaCalcite 9 20 1.68 0.23 1.62 1.67 0.23 1.39 2.13
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 8.93 0.67 9.10 9.02 0.44 6.80 9.80
## YSI_Salinity_psu 12 21 30.52 1.63 31.37 30.58 1.48 28.15 32.37
## YSI_DO_percent 13 21 97.07 9.13 94.90 96.35 7.26 83.70 118.00
## YSI_pH 14 21 7.84 0.10 7.82 7.83 0.07 7.71 8.11
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 175.90 -0.42 -1.41 12.28
## TA 166.80 -0.28 -1.53 12.82
## pHinsi_DIC_TA 0.22 0.20 -1.06 0.01
## OmegaAragonite 0.47 0.41 -1.33 0.03
## OmegaCalcite 0.74 0.40 -1.36 0.05
## CO3 0.00 0.42 -1.29 0.00
## YSI_Temp_C 3.00 -1.51 2.46 0.15
## YSI_Salinity_psu 4.22 -0.18 -1.84 0.36
## YSI_DO_percent 34.30 0.68 -0.35 1.99
## YSI_pH 0.40 1.17 1.09 0.02
## ------------------------------------------------------------
## Tank: H9
## vars n mean sd median trimmed mad min max
## Date* 1 21 11.00 6.20 11.00 11.00 7.41 1.00 21.00
## Tank* 2 21 16.00 0.00 16.00 16.00 0.00 16.00 16.00
## pH_Treatment* 3 21 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## Temp_Treatment* 4 21 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## DIC 5 20 1993.51 42.30 2003.90 1995.97 42.55 1915.90 2050.40
## TA 6 20 2116.94 56.57 2129.45 2118.09 65.53 2031.10 2194.40
## pHinsi_DIC_TA 7 20 7.94 0.05 7.94 7.94 0.04 7.81 8.03
## OmegaAragonite 8 20 1.51 0.19 1.51 1.52 0.20 1.10 1.85
## OmegaCalcite 9 20 2.38 0.29 2.39 2.40 0.29 1.74 2.93
## CO3 10 20 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 21 12.09 0.38 12.00 12.11 0.44 11.30 12.60
## YSI_Salinity_psu 12 21 30.51 1.65 31.49 30.57 1.32 28.12 32.38
## YSI_DO_percent 13 21 99.10 7.13 101.30 99.21 3.71 85.70 113.70
## YSI_pH 14 21 7.97 0.09 7.96 7.97 0.06 7.83 8.26
## range skew kurtosis se
## Date* 20.00 0.00 -1.37 1.35
## Tank* 0.00 NaN NaN 0.00
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 134.50 -0.48 -1.14 9.46
## TA 163.30 -0.30 -1.52 12.65
## pHinsi_DIC_TA 0.23 -0.65 0.98 0.01
## OmegaAragonite 0.75 -0.31 -0.42 0.04
## OmegaCalcite 1.19 -0.32 -0.31 0.07
## CO3 0.00 -0.31 -0.54 0.00
## YSI_Temp_C 1.30 -0.23 -1.11 0.08
## YSI_Salinity_psu 4.26 -0.19 -1.80 0.36
## YSI_DO_percent 28.00 -0.26 -0.63 1.56
## YSI_pH 0.43 1.23 2.44 0.02##
## Descriptive statistics by group
## Temp_Treatment: 6
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 8.44 4.08 7.00 8.42 5.93 3.00 14.00
## pH_Treatment* 3 85 2.52 1.13 3.00 2.52 1.48 1.00 4.00
## Temp_Treatment* 4 85 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## DIC 5 81 2077.01 86.88 2066.20 2073.22 87.92 1907.00 2286.80
## TA 6 81 2120.81 55.77 2140.40 2122.32 56.49 2030.00 2202.40
## pHinsi_DIC_TA 7 81 7.75 0.26 7.80 7.77 0.32 7.19 8.12
## OmegaAragonite 8 81 0.93 0.46 0.88 0.91 0.63 0.22 1.83
## OmegaCalcite 9 81 1.49 0.74 1.41 1.46 1.00 0.35 2.92
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 6.22 0.61 6.10 6.19 0.44 4.70 8.70
## YSI_Salinity_psu 12 84 30.58 1.60 31.47 30.65 1.39 27.90 32.42
## YSI_DO_percent 13 84 98.20 10.04 97.75 97.77 8.82 73.80 133.30
## YSI_pH 14 85 7.73 0.27 7.79 7.74 0.31 7.23 8.28
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 11.00 0.02 -1.31 0.44
## pH_Treatment* 3.00 -0.02 -1.41 0.12
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 379.80 0.37 -0.45 9.65
## TA 172.40 -0.36 -1.39 6.20
## pHinsi_DIC_TA 0.93 -0.36 -1.19 0.03
## OmegaAragonite 1.61 0.23 -1.24 0.05
## OmegaCalcite 2.57 0.22 -1.25 0.08
## CO3 0.00 0.23 -1.24 0.00
## YSI_Temp_C 4.00 1.10 3.38 0.07
## YSI_Salinity_psu 4.52 -0.21 -1.73 0.17
## YSI_DO_percent 59.50 0.50 0.90 1.10
## YSI_pH 1.05 -0.17 -1.01 0.03
## ------------------------------------------------------------
## Temp_Treatment: 9
## vars n mean sd median trimmed mad min max
## Date* 1 170 10.88 6.13 11.00 10.88 7.41 1.00 21.00
## Tank* 2 170 8.53 4.16 9.00 8.54 5.19 2.00 15.00
## pH_Treatment* 3 170 2.50 1.12 2.50 2.50 0.74 1.00 4.00
## Temp_Treatment* 4 170 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## DIC 5 162 2073.97 82.38 2083.15 2072.72 85.62 1897.50 2325.30
## TA 6 162 2119.43 56.94 2139.20 2121.06 56.64 2011.50 2202.60
## pHinsi_DIC_TA 7 162 7.72 0.23 7.75 7.73 0.28 6.97 8.12
## OmegaAragonite 8 162 0.94 0.44 0.89 0.92 0.54 0.16 1.92
## OmegaCalcite 9 162 1.50 0.69 1.41 1.46 0.85 0.25 3.07
## CO3 10 162 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 170 9.02 0.51 9.00 9.04 0.44 6.00 10.10
## YSI_Salinity_psu 12 168 30.56 1.60 31.47 30.62 1.42 28.08 32.54
## YSI_DO_percent 13 166 99.45 9.85 99.75 99.42 10.30 77.20 124.70
## YSI_pH 14 170 7.72 0.25 7.74 7.73 0.30 6.98 8.29
## range skew kurtosis se
## Date* 20.00 0.01 -1.23 0.47
## Tank* 13.00 -0.01 -1.14 0.32
## pH_Treatment* 3.00 0.00 -1.37 0.09
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 427.80 0.18 -0.26 6.47
## TA 191.10 -0.37 -1.35 4.47
## pHinsi_DIC_TA 1.15 -0.33 -0.70 0.02
## OmegaAragonite 1.76 0.38 -0.93 0.03
## OmegaCalcite 2.81 0.37 -0.95 0.05
## CO3 0.00 0.38 -0.93 0.00
## YSI_Temp_C 4.10 -1.55 7.51 0.04
## YSI_Salinity_psu 4.46 -0.20 -1.73 0.12
## YSI_DO_percent 47.50 0.03 -0.45 0.76
## YSI_pH 1.31 -0.18 -0.76 0.02
## ------------------------------------------------------------
## Temp_Treatment: 12
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 8.46 5.86 5.00 8.45 5.93 1.00 16.00
## pH_Treatment* 3 85 2.48 1.13 2.00 2.48 1.48 1.00 4.00
## Temp_Treatment* 4 85 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## DIC 5 81 2071.99 79.53 2070.30 2071.35 81.25 1915.90 2252.30
## TA 6 81 2117.74 56.39 2136.80 2119.11 59.16 2025.30 2202.40
## pHinsi_DIC_TA 7 81 7.68 0.22 7.70 7.68 0.31 7.32 8.03
## OmegaAragonite 8 81 0.95 0.43 0.89 0.93 0.56 0.38 1.85
## OmegaCalcite 9 81 1.51 0.67 1.40 1.48 0.88 0.61 2.93
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 11.90 0.60 11.90 11.94 0.44 9.90 13.20
## YSI_Salinity_psu 12 84 30.54 1.61 31.47 30.61 1.36 28.05 32.47
## YSI_DO_percent 13 84 99.19 10.08 99.90 99.22 11.42 75.00 121.60
## YSI_pH 14 85 7.71 0.22 7.70 7.70 0.28 7.35 8.26
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 15.00 0.02 -1.61 0.64
## pH_Treatment* 3.00 0.02 -1.41 0.12
## Temp_Treatment* 0.00 NaN NaN 0.00
## DIC 336.40 0.13 -0.66 8.84
## TA 177.10 -0.33 -1.39 6.27
## pHinsi_DIC_TA 0.71 -0.12 -1.42 0.02
## OmegaAragonite 1.47 0.31 -1.23 0.05
## OmegaCalcite 2.32 0.31 -1.24 0.07
## CO3 0.00 0.32 -1.22 0.00
## YSI_Temp_C 3.30 -0.95 2.18 0.07
## YSI_Salinity_psu 4.42 -0.22 -1.71 0.18
## YSI_DO_percent 46.60 -0.06 -0.65 1.10
## YSI_pH 0.91 0.16 -1.18 0.02##
## Descriptive statistics by group
## pH_Treatment: 7.4
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 6.48 1.13 6.00 6.48 1.48 5.00 8.00
## pH_Treatment* 3 85 1.00 0.00 1.00 1.00 0.00 1.00 1.00
## Temp_Treatment* 4 85 2.01 0.72 2.00 2.01 1.48 1.00 3.00
## DIC 5 81 2166.22 60.61 2171.60 2164.73 75.91 2059.30 2325.30
## TA 6 81 2120.64 54.17 2147.60 2121.87 47.29 2029.60 2197.90
## pHinsi_DIC_TA 7 81 7.40 0.09 7.40 7.40 0.06 6.97 7.60
## OmegaAragonite 8 81 0.43 0.09 0.42 0.43 0.08 0.16 0.73
## OmegaCalcite 9 81 0.69 0.14 0.67 0.68 0.12 0.25 1.16
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 9.04 2.03 9.30 9.06 1.19 5.30 12.80
## YSI_Salinity_psu 12 84 30.56 1.58 31.55 30.62 1.30 28.08 32.54
## YSI_DO_percent 13 83 98.06 9.73 98.40 98.37 10.38 73.80 119.20
## YSI_pH 14 85 7.40 0.10 7.41 7.41 0.07 6.98 7.64
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 3.00 0.02 -1.41 0.12
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 2.00 -0.02 -1.07 0.08
## DIC 266.00 0.13 -0.81 6.73
## TA 168.30 -0.34 -1.39 6.02
## pHinsi_DIC_TA 0.63 -1.18 5.37 0.01
## OmegaAragonite 0.57 0.23 1.52 0.01
## OmegaCalcite 0.91 0.23 1.59 0.02
## CO3 0.00 0.20 1.45 0.00
## YSI_Temp_C 7.50 -0.18 -0.82 0.22
## YSI_Salinity_psu 4.46 -0.20 -1.75 0.17
## YSI_DO_percent 45.40 -0.21 -0.29 1.07
## YSI_pH 0.66 -0.63 2.55 0.01
## ------------------------------------------------------------
## pH_Treatment: 7.6
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 7.76 3.96 9.00 8.17 1.48 1.00 11.00
## pH_Treatment* 3 85 2.00 0.00 2.00 2.00 0.00 2.00 2.00
## Temp_Treatment* 4 85 2.00 0.71 2.00 2.00 0.00 1.00 3.00
## DIC 5 81 2100.82 43.75 2101.70 2101.49 55.60 2021.30 2171.10
## TA 6 81 2120.48 57.87 2143.20 2122.10 56.64 2011.50 2202.60
## pHinsi_DIC_TA 7 81 7.63 0.08 7.63 7.63 0.09 7.43 7.84
## OmegaAragonite 8 81 0.71 0.14 0.72 0.71 0.16 0.46 1.00
## OmegaCalcite 9 81 1.13 0.22 1.14 1.13 0.25 0.73 1.60
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 9.02 2.17 8.80 8.99 1.33 5.00 13.20
## YSI_Salinity_psu 12 84 30.59 1.61 31.46 30.66 1.48 28.05 32.54
## YSI_DO_percent 13 84 100.03 11.73 99.80 99.48 12.38 77.50 133.30
## YSI_pH 14 85 7.62 0.10 7.60 7.61 0.06 7.48 7.98
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 10.00 -1.04 -0.77 0.43
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 2.00 0.00 -1.02 0.08
## DIC 149.80 -0.16 -1.24 4.86
## TA 191.10 -0.37 -1.36 6.43
## pHinsi_DIC_TA 0.40 -0.05 -0.36 0.01
## OmegaAragonite 0.55 0.05 -0.87 0.02
## OmegaCalcite 0.87 0.05 -0.84 0.02
## CO3 0.00 0.05 -0.88 0.00
## YSI_Temp_C 8.20 0.09 -0.81 0.24
## YSI_Salinity_psu 4.49 -0.21 -1.72 0.18
## YSI_DO_percent 55.80 0.37 -0.43 1.28
## YSI_pH 0.50 1.75 3.65 0.01
## ------------------------------------------------------------
## pH_Treatment: 7.8
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 13.49 1.12 13.00 13.49 1.48 12.00 15.00
## pH_Treatment* 3 85 3.00 0.00 3.00 3.00 0.00 3.00 3.00
## Temp_Treatment* 4 85 2.00 0.71 2.00 2.00 0.00 1.00 3.00
## DIC 5 81 2039.92 50.72 2059.20 2044.20 45.52 1931.20 2113.10
## TA 6 81 2118.17 57.66 2137.90 2119.66 58.27 2025.30 2200.80
## pHinsi_DIC_TA 7 81 7.84 0.07 7.83 7.84 0.08 7.70 7.99
## OmegaAragonite 8 81 1.11 0.17 1.11 1.10 0.20 0.85 1.47
## OmegaCalcite 9 81 1.76 0.26 1.75 1.75 0.33 1.36 2.31
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 9.10 2.01 9.20 9.10 1.78 6.00 12.40
## YSI_Salinity_psu 12 84 30.55 1.61 31.41 30.62 1.48 28.08 32.42
## YSI_DO_percent 13 84 99.16 9.42 99.50 99.02 9.27 77.20 121.60
## YSI_pH 14 85 7.85 0.09 7.82 7.84 0.07 7.70 8.13
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 3.00 0.01 -1.39 0.12
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 2.00 0.00 -1.02 0.08
## DIC 181.90 -0.59 -0.97 5.64
## TA 175.50 -0.34 -1.41 6.41
## pHinsi_DIC_TA 0.30 0.14 -0.72 0.01
## OmegaAragonite 0.62 0.17 -0.91 0.02
## OmegaCalcite 0.95 0.16 -0.95 0.03
## CO3 0.00 0.17 -0.91 0.00
## YSI_Temp_C 6.40 -0.01 -1.03 0.22
## YSI_Salinity_psu 4.34 -0.20 -1.73 0.18
## YSI_DO_percent 44.40 0.11 -0.37 1.03
## YSI_pH 0.43 1.10 1.18 0.01
## ------------------------------------------------------------
## pH_Treatment: Ambient
## vars n mean sd median trimmed mad min max
## Date* 1 85 10.88 6.15 11.00 10.87 7.41 1.00 21.00
## Tank* 2 85 6.21 5.68 3.00 5.57 1.48 2.00 16.00
## pH_Treatment* 3 85 4.00 0.00 4.00 4.00 0.00 4.00 4.00
## Temp_Treatment* 4 85 1.99 0.72 2.00 1.99 1.48 1.00 3.00
## DIC 5 81 1989.98 41.51 1999.20 1992.58 46.41 1897.50 2050.40
## TA 6 81 2118.12 56.63 2136.80 2119.68 59.16 2026.30 2198.90
## pHinsi_DIC_TA 7 81 8.00 0.06 8.01 8.00 0.06 7.81 8.12
## OmegaAragonite 8 81 1.52 0.20 1.52 1.53 0.21 1.08 1.92
## OmegaCalcite 9 81 2.42 0.32 2.43 2.43 0.31 1.73 3.07
## CO3 10 81 0.00 0.00 0.00 0.00 0.00 0.00 0.00
## YSI_Temp_C 11 85 8.99 2.15 8.90 8.98 2.37 4.70 12.60
## YSI_Salinity_psu 12 84 30.53 1.62 31.48 30.60 1.33 27.90 32.40
## YSI_DO_percent 13 83 99.01 8.69 99.80 99.15 9.64 78.60 115.50
## YSI_pH 14 85 8.01 0.09 8.00 8.00 0.07 7.83 8.29
## range skew kurtosis se
## Date* 20.00 0.01 -1.25 0.67
## Tank* 14.00 1.10 -0.72 0.62
## pH_Treatment* 0.00 NaN NaN 0.00
## Temp_Treatment* 2.00 0.02 -1.07 0.08
## DIC 152.90 -0.52 -0.92 4.61
## TA 172.60 -0.37 -1.38 6.29
## pHinsi_DIC_TA 0.32 -0.32 -0.11 0.01
## OmegaAragonite 0.85 -0.28 -0.54 0.02
## OmegaCalcite 1.34 -0.28 -0.45 0.04
## CO3 0.00 -0.28 -0.63 0.00
## YSI_Temp_C 7.90 0.13 -0.92 0.23
## YSI_Salinity_psu 4.50 -0.21 -1.73 0.18
## YSI_DO_percent 36.90 -0.18 -0.78 0.95
## YSI_pH 0.46 1.03 1.75 0.01DIC, TA, pHinsi, aragonite, calcite, co3, temp, salinity, do, ysiph
colnames(temp.ph)## [1] "Date" "Tank" "pH_Treatment" "Temp_Treatment"
## [5] "DIC" "TA" "pHinsi_DIC_TA" "OmegaAragonite"
## [9] "OmegaCalcite" "CO3" "YSI_Temp_C" "YSI_Salinity_psu"
## [13] "YSI_DO_percent" "YSI_pH"leveneTest(DIC~Temp_Treatment*pH_Treatment, data = temp.ph)## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 1.3044 0.2206
## 312leveneTest(TA~Temp_Treatment*pH_Treatment, data = temp.ph)## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 0.0509 1
## 312leveneTest(pHinsi_DIC_TA~Temp_Treatment*pH_Treatment, data = temp.ph) #significant ## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 2.0269 0.02562 *
## 312
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(OmegaAragonite~Temp_Treatment*pH_Treatment, data = temp.ph)#significant## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 5.8748 1.118e-08 ***
## 312
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(OmegaCalcite~Temp_Treatment*pH_Treatment, data = temp.ph)#significant## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 5.5519 4.002e-08 ***
## 312
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(CO3~Temp_Treatment*pH_Treatment, data = temp.ph)#significant## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 6.1297 4.091e-09 ***
## 312
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(YSI_Temp_C~Temp_Treatment*pH_Treatment, data = temp.ph) #somewhat## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 1.6956 0.07301 .
## 328
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(YSI_Salinity_psu~Temp_Treatment*pH_Treatment, data = temp.ph)## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 0.0056 1
## 324leveneTest(YSI_DO_percent~Temp_Treatment*pH_Treatment, data = temp.ph)#somewhat## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 1.5996 0.0974 .
## 322
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1leveneTest(YSI_pH~Temp_Treatment*pH_Treatment, data = temp.ph)## Levene's Test for Homogeneity of Variance (center = median)
## Df F value Pr(>F)
## group 11 0.3333 0.978
## 328look at the data
temp.ph.long<-melt(temp.ph, id=c("Date", "Tank", "pH_Treatment", "Temp_Treatment"))## Warning in melt(temp.ph, id = c("Date", "Tank", "pH_Treatment",
## "Temp_Treatment")): The melt generic in data.table has been passed a
## spec_tbl_df and will attempt to redirect to the relevant reshape2 method;
## please note that reshape2 is deprecated, and this redirection is now deprecated
## as well. To continue using melt methods from reshape2 while both libraries are
## attached, e.g. melt.list, you can prepend the namespace like
## reshape2::melt(temp.ph). In the next version, this warning will become an
## error.#temp.ph.long$pH_Treatment <- factor(temp.ph.long$pH_Treatment, levels=c('7.4', '7.6', '7.8','8'))
#levels(temp.ph.long$pH_Treatment)
box.plot<-ggplot(temp.ph.long,aes(y=pH_Treatment, x= value, fill=Temp_Treatment))+
geom_boxplot()+
theme_classic()+
#scale_color_viridis_d( option = "plasma", guide = FALSE, breaks = c(6, 9, 12))+
scale_fill_viridis_d( option= "plasma")+
facet_grid(.~variable, scales = "free")+
theme(axis.text.x = element_text(angle = 90))+
labs(x="", y="pH", fill = "Temp (C)")+
scale_y_discrete(labels=c("7.4", "7.6", "7.8", "8"))+
theme(legend.direction = "horizontal",legend.position = "bottom")
box.plot## Warning: Removed 106 rows containing non-finite values (`stat_boxplot()`).
box.plot.2<-ggplot(temp.ph.long,aes(y=Temp_Treatment, x= value, fill=pH_Treatment))+
geom_boxplot()+
theme_classic()+
#scale_color_viridis_d( option = "plasma", guide = FALSE, breaks = c(6, 9, 12))+
#scale_color_viridis_d( option = "cividis", direction = -1)+
scale_fill_viridis_d( option = "cividis", direction = -1, labels=c("7.4", "7.6", "7.8", "8"))+
facet_grid(.~variable, scales = "free")+
theme(axis.text.x = element_text(angle = 90))+
labs(x="", y="Temp (C)", fill = "pH ")+
theme(legend.direction = "horizontal",legend.position = "bottom")
box.plot.2## Warning: Removed 106 rows containing non-finite values (`stat_boxplot()`).
abiotic.both<-ggarrange(box.plot,box.plot.2,
labels = c("A","B"),
ncol = 1, nrow = 2)## Warning: Removed 106 rows containing non-finite values (`stat_boxplot()`).## Warning: Removed 106 rows containing non-finite values (`stat_boxplot()`).ggsave("02_output/02_plots/abiotic.png", abiotic.both, width = 14, height = 10, dpi = 600)