4. Laboratory data
4.1 Acrylamide & Glycidamide
AMDGYD = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/AMDGYD_H.XPT")
write.csv(AMDGYD, file = "AMDGYD.csv", row.names = F)
4.2 Acrylamide & Glycidamide - Special Sample
AMDGDS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/AMDGDS_H.XPT")
write.csv(AMDGDS, file = "AMDGDS.csv", row.names = F)
4.3 Albumin & Creatinine - Urine
ALB_CR = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ALB_CR_H.XPT")
write.csv(ALB_CR, file = "ALB_CR.csv", row.names = F)
4.4 Aldehydes - Serum
ALD = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ALD_H.XPT")
write.csv(ALD, file = "ALD.csv", row.names = F)
4.5 Aldehydes - Serum - Special Sample
ALDS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ALDS_H.XPT")
write.csv(ALDS, file = "ALDS.csv", row.names = F)
4.6 Antibody to Toxocara spp. (Surplus)
SSTOCA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSTOCA_H.XPT")
write.csv(SSTOCA, file = "SSTOCA.csv", row.names = F)
4.7 Apolipoprotein B
APOB = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/APOB_H.XPT")
write.csv(APOB, file = "APOB.csv", row.names = F)
4.8 Aromatic Amines - Urine
AA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/AA_H.XPT")
write.csv(AA, file = "AA.csv", row.names = F)
4.9 Aromatic Amines - Urine - Special Sample
AAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/AAS_H.XPT")
write.csv(AAS, file = "AAS.csv", row.names = F)
4.10 Arsenic - Total - Urine
UTAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UTAS_H.XPT")
write.csv(UTAS, file = "UTAS.csv", row.names = F)
4.11 Arsenic - Total - Urine - Special Sample
UTASS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UTASS_H.XPT")
write.csv(UTASS, file = "UTASS.csv", row.names = F)
4.12 Arsenics - Speciated - Urine
UAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UAS_H.XPT")
write.csv(UAS, file = "UAS.csv", row.names = F)
4.13 Arsenics - Speciated - Urine - Special Sample
UASS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UASS_H.XPT")
write.csv(UASS, file = "UASS.csv", row.names = F)
4.14 Brominated Flame Retardants (BFRs) - Pooled Samples
BFRPOL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/BFRPOL_H.XPT")
write.csv(BFRPOL, file = "BFRPOL.csv", row.names = F)
4.16 Chlamydia - Urine
CHLMDA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/CHLMDA_H.XPT")
write.csv(CHLMDA, file = "CHLMDA.csv", row.names = F)
4.17 Chlamydia Pgp3 (plasmid gene product 3) ELISA (enzyme linked
immunosorbent assay) and multiplex bead array (MBA) results
SSCT = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSCT_H.XPT")
write.csv(SSCT, file = "SSCT.csv", row.names = F)
4.18 Cholesterol - HDL
HDL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HDL_H.XPT")
write.csv(HDL, file = "HDL.csv", row.names = F)
4.19 Cholesterol - LDL & Triglycerides
TRIGLY = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TRIGLY_H.XPT")
write.csv(TRIGLY, file = "TRIGLY.csv", row.names = F)
4.20 Cholesterol - Total
TCHOL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TCHOL_H.XPT")
write.csv(TCHOL, file = "TCHOL.csv", row.names = F)
4.21 Complete Blood Count with 5-part Differential - Whole
Blood
CBC = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/CBC_H.XPT")
write.csv(CBC, file = "CBC.csv", row.names = F)
4.22 Copper, Selenium & Zinc - Serum
CUSEZN = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/CUSEZN_H.XPT")
write.csv(CUSEZN, file = "CUSEZN.csv", row.names = F)
4.23 Cotinine and Hydroxycotinine - Serum
COT = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/COT_H.XPT")
write.csv(COT, file = "COT.csv", row.names = F)
4.27 Ethylene Oxide
ETHOX = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ETHOX_H.XPT")
write.csv(ETHOX, file = "ETHOX.csv", row.names = F)
4.28 Ethylene Oxide - Special Sample
ETHOXS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ETHOXS_H.XPT")
write.csv(ETHOXS, file = "ETHOXS.csv", row.names = F)
4.29 Fasting Questionnaire
FASTQX = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/FASTQX_H.XPT")
write.csv(FASTQX, file = "FASTQX.csv", row.names = F)
4.30 Fatty Acids - Serum
FAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/FAS_H.XPT")
write.csv(FAS, file = "FAS.csv", row.names = F)
4.32 Fluoride - Plasma
FLDEP = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/FLDEP_H.XPT")
write.csv(FLDEP, file = "FLDEP.csv", row.names = F)
4.33 Fluoride - Water
FLDEW = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/FLDEW_H.XPT")
write.csv(FLDEW, file = "FLDEW.csv", row.names = F)
4.34 Folate - RBC
FOLATE = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/FOLATE_H.XPT")
write.csv(FOLATE, file = "FOLATE.csv", row.names = F)
4.38 Glycohemoglobin
GHB = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/GHB_H.XPT")
write.csv(GHB, file = "GHB.csv", row.names = F)
4.39 Glyphosate (GLYP) - Urine
SSGLYP = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSGLYP_H.XPT")
write.csv(SSGLYP, file = "SSGLYP.csv", row.names = F)
4.40 Hepatitis A
HEPA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HEPA_H.XPT")
write.csv(HEPA, file = "HEPA.csv", row.names = F)
4.41 Hepatitis B: core antibody, surface antigen, and Hepatitis D
antibody
HEPBD = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HEPBD_H.XPT")
write.csv(HEPBD, file = "HEPBD.csv", row.names = F)
4.42 Hepatitis B: Surface Antibody
HEPB_S = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HEPB_S_H.XPT")
write.csv(HEPB_S, file = "HEPB_S.csv", row.names = F)
4.43 Hepatitis C: Confirmed Antibody (INNO-LIA)
SSHEPC = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSHEPC_H.XPT")
write.csv(SSHEPC, file = "SSHEPC.csv", row.names = F)
4.44 Hepatitis C: RNA (HCV-RNA) and Hepatitis C Genotype
HEPC = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HEPC_H.XPT")
write.csv(HEPC, file = "HEPC.csv", row.names = F)
4.45 Hepatitis E: IgG & IgM Antibodies
HEPE = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HEPE_H.XPT")
write.csv(HEPE, file = "HEPE.csv", row.names = F)
4.46 Herpes Simplex Virus Type-1 & Type-2
HSV = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HSV_H.XPT")
write.csv(HSV, file = "HSV.csv", row.names = F)
4.47 Heterocyclic Aromatic Amines - Urine
HCAA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HCAA_H.XPT")
write.csv(HCAA, file = "HCAA.csv", row.names = F)
4.47 Heterocyclic Aromatic Amines (HCAA) - Urine - Special
Sample
HCAAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HCAAS_H.XPT")
write.csv(HCAAS, file = "HCAAS.csv", row.names = F)
4.48 HIV Antibody Test
HIV = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HIV_H.XPT")
write.csv(HIV, file = "HIV.csv", row.names = F)
4.49 Human Papillomavirus (HPV) - Oral Rinse
ORHPV = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/ORHPV_H.XPT")
write.csv(ORHPV, file = "ORHPV.csv", row.names = F)
4.50 Human Papillomavirus (HPV) DNA - Vaginal Swab: Roche Cobas
& Roche Linear Array
HPVSWR = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HPVSWR_H.XPT")
write.csv(HPVSWR, file = "HPVSWR.csv", row.names = F)
4.51 Human Papillomavirus (HPV) DNA Results from Penile Swab
Samples: Roche Linear Array
HPVP = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/HPVP_H.XPT")
write.csv(HPVP, file = "HPVP.csv", row.names = F)
4.52 Insulin
INS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/INS_H.XPT")
write.csv(INS, file = "INS.csv", row.names = F)
4.53 Insulin
INS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/INS_H.XPT")
write.csv(INS, file = "INS.csv", row.names = F)
4.54 Iodine - Urine
UIO = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UIO_H.XPT")
write.csv(UIO, file = "UIO.csv", row.names = F)
4.55 Klotho - Serum (Surplus)
SSKL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSKL_H.XPT")
write.csv(SSKL, file = "SSKL.csv", row.names = F)
4.56 Lead, Cadmium, Total Mercury, Selenium, and Manganese -
Blood
PBCD = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PBCD_H.XPT")
write.csv(PBCD, file = "PBCD.csv", row.names = F)
4.57 Mercury: Inorganic - Urine
UHG = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UHG_H.XPT")
write.csv(UHG, file = "UHG.csv", row.names = F)
4.58 Mercury: Inorganic, Ethyl and Methyl - Blood
IHGEM = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/IHGEM_H.XPT")
write.csv(IHGEM, file = "IHGEM.csv", row.names = F)
4.61 Methylmalonic Acid
MMA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/MMA_H.XPT")
write.csv(MMA, file = "MMA.csv", row.names = F)
4.62 Non-dioxin-like Polychlorinated Biphenyls &
Mono-ortho-substituted Polychlorinated Biphenyls - Serum - Pooled
Samples
PCBPOL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PCBPOL_H.XPT")
write.csv(PCBPOL, file = "PCBPOL.csv", row.names = F)
4.63 Oral Glucose Tolerance Test
OGTT = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/OGTT_H.XPT")
write.csv(OGTT, file = "OGTT.csv", row.names = F)
4.64 Perchlorate, Nitrate & Thiocyanate - Urine
PERNT = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PERNT_H.XPT")
write.csv(PERNT, file = "PERNT.csv", row.names = F)
4.65 Perchlorate, Nitrate & Thiocyanate - Urine - Special
Sample
PERNTS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PERNTS_H.XPT")
write.csv(PERNTS, file = "PERNTS.csv", row.names = F)
4.66 Perfluoroalkyl and Polyfluoroalkyl Substances
SSPFSU = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSPFSU_H.XPT")
write.csv(SSPFSU, file = "SSPFSU.csv", row.names = F)
4.67 Perfluoroalkyl and Polyfluoroalkyl Substances - Linear and
Branched PFOS and PFOA Isomers (Surplus)
SSPFAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSPFAS_H.XPT")
write.csv(SSPFAS, file = "SSPFAS.csv", row.names = F)
4.69 Perfluoroalkyl and Polyfluoroalkyl Substances in US children
3-11 Years of Age
SSPFAC = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSPFAC_H.XPT")
write.csv(SSPFAC, file = "SSPFAC.csv", row.names = F)
4.71 Pesticides - Organochlorine Pesticides - Serum - Pooled
Samples
PSTPOL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PSTPOL_H.XPT")
write.csv(PSTPOL, file = "PSTPOL.csv", row.names = F)
4.74 Plasma Fasting Glucose
GLU = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/GLU_H.XPT")
write.csv(GLU, file = "GLU.csv", row.names = F)
4.75 Polycyclic Aromatic Hydrocarbons (PAH) - Urine
PAH = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/PAH_H.XPT")
write.csv(PAH, file = "PAH.csv", row.names = F)
4.76 Pooled-Sample Technical Support File
POOLTF = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/POOLTF_H.XPT")
write.csv(POOLTF, file = "POOLTF.csv", row.names = F)
4.77 Pregnancy Test - Urine
UCPREG = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UCPREG_H.XPT")
write.csv(UCPREG, file = "UCPREG.csv", row.names = F)
4.79 Serum Neurofilament Light Chain - Serum
SSSNFL = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSSNFL_H.XPT")
write.csv(SSSNFL, file = "SSSNFL.csv", row.names = F)
4.80 Sex Steroid Hormone - Serum
TST = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TST_H.XPT")
write.csv(TST, file = "TST.csv", row.names = F)
4.81 Standard Biochemistry Profile
BIOPRO = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/BIOPRO_H.XPT")
write.csv(BIOPRO, file = "BIOPRO.csv", row.names = F)
4.82 Terpenes – Serum (Surplus)
SSTERP = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSTERP_H.XPT")
write.csv(SSTERP, file = "SSTERP.csv", row.names = F)
4.83 Tissue Transglutaminase Assay (IgA-TTG) & IgA Endomyseal
Antibody Assay (IgA EMA)
TGEMA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TGEMA_H.XPT")
write.csv(TGEMA, file = "TGEMA.csv", row.names = F)
4.84 Tobacco-specific Nitrosamines (TSNAs) - Urine
TSNA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TSNA_H.XPT")
write.csv(TSNA, file = "TTSNA.csv", row.names = F)
4.85 Toxoplasma gondii Antibody - Serum (Surplus)
SSTOXO = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/SSTOXO_H.XPT")
write.csv(SSTOXO, file = "SSTOXO.csv", row.names = F)
4.86 Trichomonas - Urine
TRICH = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/TRICH_H.XPT")
write.csv(TRICH, file = "TRICH.csv", row.names = F)
4.87 Urine Flow Rate
UCFLOW = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/UCFLOW_H.XPT")
write.csv(UCFLOW, file = "UCFLOW.csv", row.names = F)
4.88 Vitamin B12
VITB12 = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VITB12_H.XPT")
write.csv(VITB12, file = "VITB12.csv", row.names = F)
4.89 Vitamin D
VID = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VID_H.XPT")
write.csv(VID, file = "VID.csv", row.names = F)
4.90 Volatile N-Nitrosamine Compounds (VNAs) - Urine
VNA = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VNA_H.XPT")
write.csv(VNA, file = "VNA.csv", row.names = F)
4.91 Volatile N-Nitrosamine Compounds (VNAs) - Urine - Special
Sample
VNAS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VNAS_H.XPT")
write.csv(VNAS, file = "VNAS.csv", row.names = F)
4.94 Volatile Organic Compounds (VOCs) and Trihalomethanes/MTBE -
Blood - Special Sample
VOCWBS = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VOCWBS_H.XPT")
write.csv(VOCWBS, file = "VOCWBS.csv", row.names = F)
4.95 Volatile Organic Compounds and Trihalomethanes/MTBE -
Blood
VOCWB = read.xport("/Users/thien/Desktop/NIBIOHN/Weekly report/NHANES 2013-2014/Laboratory data/VOCWB_H.XPT")
write.csv(VOCWB, file = "VOCWB.csv", row.names = F)