Microbiota Analysis

Python

Conda

• Anaconda https://repo.anaconda.com/archive/

• Miniconda https://repo.anaconda.com/miniconda/

Ambientes

• Crear conda create --name <nombre_ambiente>

• Lista conda info --envs

• Activar activate <nombre_ambiente>

• Instalar paquetes conda install -c conda-forge jupyterlab

• Actualizar conda update conda

WSL

PowerShell o CMD como Administrador

• wsl --install

• <Win10

QIIME

• wget conda install wget

• Mac wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2023.9-py38-osx-conda.yml

conda env create -n qiime2-amplicon-2023.9 --file qiime2-amplicon-2023.9-py38-osx-conda.yml

• Win wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2023.9-py38-linux-conda.yml

conda env create -n qiime2-amplicon-2023.9 --file qiime2-amplicon-2023.9-py38-linux-conda.yml

• Lin wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2023.9-py38-linux-conda.yml

conda env create -n qiime2-amplicon-2023.9 --file qiime2-amplicon-2023.9-py38-linux-conda.yml

• Limpieza

  • rm qiime2-amplicon-2023.9-py38-osx-conda.yml

  • rm qiime2-amplicon-2023.9-py38-linux-conda.yml

• Activar ambiente conda activate qiime2-amplicon-2023.9

• Ayuda qiime --help

R

• R 4.3.1

• RStudio

Web

Microbiome Analyst