National AMR Surveillance Sites

Yearly isolates summary

Weighted-Incidence Syndromic Combination Antibiogram (WISCA)

Resistance per genus and antibiotic

## Warning: The geom_rsi() function has been replaced with geom_sir(), see
## ?AMR-deprecated.
## This warning will be shown once per session.
## Warning: The facet_rsi() function has been replaced with facet_sir(), see
## ?AMR-deprecated.
## This warning will be shown once per session.
## Warning: The scale_rsi_colours() function has been replaced with
## scale_sir_colours(), see ?AMR-deprecated.
## This warning will be shown once per session.
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_41".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_40".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_41".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_40".

## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_40".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_41".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_75".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_40".
## Warning: in as.ab(): these values could not be coerced to a valid antimicrobial
## ID: "co_trimoxazole_interpretation_74".
## Warning: Removed 254 rows containing missing values (`position_stack()`).

Antimicrobial Susceptibility Patterns

Specimen isolated per genus