The goal project is to replace the gene names with Entrez ID extracted from the “gene_info” file
# reading the important R Library
library(tidyverse)## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr 1.1.2 ✔ readr 2.1.4
## ✔ forcats 1.0.0 ✔ stringr 1.5.0
## ✔ ggplot2 3.4.2 ✔ tibble 3.2.1
## ✔ lubridate 1.9.2 ✔ tidyr 1.3.0
## ✔ purrr 1.0.1
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## ✖ dplyr::filter() masks stats::filter()
## ✖ dplyr::lag() masks stats::lag()
## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errorslibrary(stringr)
library(readr)# Required package
# Define the file path
file_path <- "D:\\R_Tutorials\\BioInformatics\\Entrez_geneIDmapping\\Homo_sapiens.gene_info.gz"
# Read the gzipped .csv file into a DataFrame
data <- read_tsv(gzfile(file_path))## Rows: 191242 Columns: 16
## ── Column specification ────────────────────────────────────────────────────────
## Delimiter: "\t"
## chr (13): Symbol, LocusTag, Synonyms, dbXrefs, chromosome, map_location, des...
## dbl (3): #tax_id, GeneID, Modification_date
##
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.# Print the first few rows
head(data)## # A tibble: 6 × 16
## `#tax_id` GeneID Symbol LocusTag Synonyms dbXrefs chromosome map_location
## <dbl> <dbl> <chr> <chr> <chr> <chr> <chr> <chr>
## 1 9606 1 A1BG - A1B|ABG|GAB|… MIM:13… 19 19q13.43
## 2 9606 2 A2M - A2MD|CPAMD5|… MIM:10… 12 12p13.31
## 3 9606 3 A2MP1 - A2MP HGNC:H… 12 12p13.31
## 4 9606 9 NAT1 - AAC1|MNAT|NA… MIM:10… 8 8p22
## 5 9606 10 NAT2 - AAC2|NAT-2|P… MIM:61… 8 8p22
## 6 9606 11 NATP - AACP|NATP1 HGNC:H… 8 8p22
## # ℹ 8 more variables: description <chr>, type_of_gene <chr>,
## # Symbol_from_nomenclature_authority <chr>,
## # Full_name_from_nomenclature_authority <chr>, Nomenclature_status <chr>,
## # Other_designations <chr>, Modification_date <dbl>, Feature_type <chr>The file contains a lot of information, but following columns are important: 2, 3, 5. These are GeneID (Entrez Id), Symbol and Synonyms.
# List of columns to drop
cols_to_drop <- c("#tax_id", "LocusTag", "dbXrefs", "chromosome", "map_location", "description",
"type_of_gene", "Symbol_from_nomenclature_authority",
"Full_name_from_nomenclature_authority", "Nomenclature_status",
"Other_designations", "Modification_date", "Feature_type")
# Drop columns
filtered_data <- data[, !(names(data) %in% cols_to_drop)]
head(filtered_data)## # A tibble: 6 × 3
## GeneID Symbol Synonyms
## <dbl> <chr> <chr>
## 1 1 A1BG A1B|ABG|GAB|HYST2477
## 2 2 A2M A2MD|CPAMD5|FWP007|S863-7
## 3 3 A2MP1 A2MP
## 4 9 NAT1 AAC1|MNAT|NAT-1|NATI
## 5 10 NAT2 AAC2|NAT-2|PNAT
## 6 11 NATP AACP|NATP1The Synonym column have multiple Symbol names separated by “|” (pipe), like this AACT|ACT|GIG24|GIG25. extracted the individual gene names from this column add them to the Symbol to GeneId map.
# Load required packages
# Separate the 'Synonyms' column into multiple rows
exploded_data <- filtered_data %>%
separate_rows(Synonyms, sep = "\\|")
# View the DataFrame
head(exploded_data)## # A tibble: 6 × 3
## GeneID Symbol Synonyms
## <dbl> <chr> <chr>
## 1 1 A1BG A1B
## 2 1 A1BG ABG
## 3 1 A1BG GAB
## 4 1 A1BG HYST2477
## 5 2 A2M A2MD
## 6 2 A2M CPAMD5“h.all.v2023.1.Hs.symbols.gmt” This is a gene matrix transposed file. This is a tab-delimited text file. This type of file is used for pathway analysis. It is a very simple file format, however, each line can be of different lengths. This file, therefore, should be read line by line, not by columns. If split each line on tab, it will create a number of values (or fields). The first two values are “pathway name” and”pathway description”. All subsequent values are gene names that belong to the particular pathway.
# Define the function to read a GMT file
read_gmt <- function(file_path) {
# Check if the file exists
if (!file.exists(file_path)) {
stop("File does not exist: ", file_path)
}
# Read the file line by line
lines <- readLines(file_path)
# Check if the file is empty
if (length(lines) == 0) {
stop("File is empty: ", file_path)
}
# Initialize the list to store the gene sets
gene_sets <- list()
# Process each line
for(line in lines) {
# Split the line into components
split_line <- strsplit(line, "\t")[[1]]
# Extract the gene set name, description, and genes
gene_set_name <- split_line[1]
description <- split_line[2]
genes <- split_line[3:length(split_line)]
# If there is no description, adjust accordingly
if(description %in% genes) {
genes <- genes[genes != description]
description <- NA
}
# Add the gene set to the list
gene_sets[[gene_set_name]] <- list(description = description, genes = genes)
}
return(gene_sets)
}
# Define the function to print all gene sets
print_all_gene_sets <- function(gene_sets) {
for(gene_set in names(gene_sets)) {
cat("Gene Set:", gene_set, "\n")
cat("Description:", gene_sets[[gene_set]]$description, "\n")
cat("Genes:", paste(gene_sets[[gene_set]]$genes, collapse = ", "), "\n\n")
}
}
# Use the function
file_path <- "D:\\R_Tutorials\\BioInformatics\\Entrez_geneIDmapping\\h.all.v2023.1.Hs.symbols.gmt"
gene_sets <- read_gmt(file_path)
# Check if there are any gene sets
if (length(gene_sets) == 0) {
print("No gene sets found.")
} else {
# Print all gene sets
print_all_gene_sets(gene_sets)
}## Gene Set: HALLMARK_TNFA_SIGNALING_VIA_NFKB
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_TNFA_SIGNALING_VIA_NFKB
## Genes: JUNB, CXCL2, ATF3, NFKBIA, TNFAIP3, PTGS2, CXCL1, IER3, CD83, CCL20, CXCL3, MAFF, NFKB2, TNFAIP2, HBEGF, KLF6, BIRC3, PLAUR, ZFP36, ICAM1, JUN, EGR3, IL1B, BCL2A1, PPP1R15A, ZC3H12A, SOD2, NR4A2, IL1A, RELB, TRAF1, BTG2, DUSP1, MAP3K8, ETS2, F3, SDC4, EGR1, IL6, TNF, KDM6B, NFKB1, LIF, PTX3, FOSL1, NR4A1, JAG1, CCL4, GCH1, CCL2, RCAN1, DUSP2, EHD1, IER2, REL, CFLAR, RIPK2, NFKBIE, NR4A3, PHLDA1, IER5, TNFSF9, GEM, GADD45A, CXCL10, PLK2, BHLHE40, EGR2, SOCS3, SLC2A6, PTGER4, DUSP5, SERPINB2, NFIL3, SERPINE1, TRIB1, TIPARP, RELA, BIRC2, CXCL6, LITAF, TNFAIP6, CD44, INHBA, PLAU, MYC, TNFRSF9, SGK1, TNIP1, NAMPT, FOSL2, PNRC1, ID2, CD69, IL7R, EFNA1, PHLDA2, PFKFB3, CCL5, YRDC, IFNGR2, SQSTM1, BTG3, GADD45B, KYNU, G0S2, BTG1, MCL1, VEGFA, MAP2K3, CDKN1A, CCN1, TANK, IFIT2, IL18, TUBB2A, IRF1, FOS, OLR1, RHOB, AREG, NINJ1, ZBTB10, PLPP3, KLF4, CXCL11, SAT1, CSF1, GPR183, PMEPA1, PTPRE, TLR2, ACKR3, KLF10, MARCKS, LAMB3, CEBPB, TRIP10, F2RL1, KLF9, LDLR, TGIF1, RNF19B, DRAM1, B4GALT1, DNAJB4, CSF2, PDE4B, SNN, PLEK, STAT5A, DENND5A, CCND1, RIGI, SPHK1, CD80, TNFAIP8, CCNL1, FUT4, CCRL2, SPSB1, TSC22D1, B4GALT5, SIK1, CLCF1, NFE2L2, FOSB, PER1, NFAT5, ATP2B1, IL12B, IL6ST, SLC16A6, ABCA1, HES1, BCL6, IRS2, SLC2A3, CEBPD, IL23A, SMAD3, TAP1, MSC, IFIH1, IL15RA, TNIP2, BCL3, PANX1, FJX1, EDN1, EIF1, BMP2, DUSP4, PDLIM5, ICOSLG, GFPT2, KLF2, TNC, SERPINB8, MXD1
##
## Gene Set: HALLMARK_HYPOXIA
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HYPOXIA
## Genes: PGK1, PDK1, GBE1, PFKL, ALDOA, ENO2, PGM1, NDRG1, HK2, ALDOC, GPI, MXI1, SLC2A1, P4HA1, ADM, P4HA2, ENO1, PFKP, AK4, FAM162A, PFKFB3, VEGFA, BNIP3L, TPI1, ERO1A, KDM3A, CCNG2, LDHA, GYS1, GAPDH, BHLHE40, ANGPTL4, JUN, SERPINE1, LOX, GCK, PPFIA4, MAFF, DDIT4, SLC2A3, IGFBP3, NFIL3, FOS, RBPJ, HK1, CITED2, ISG20, GALK1, WSB1, PYGM, STC1, ZNF292, BTG1, PLIN2, CSRP2, VLDLR, JMJD6, EXT1, F3, PDK3, ANKZF1, UGP2, ALDOB, STC2, ERRFI1, ENO3, PNRC1, HMOX1, PGF, GAPDHS, CHST2, TMEM45A, BCAN, ATF3, CAV1, AMPD3, GPC3, NDST1, IRS2, SAP30, GAA, SDC4, STBD1, IER3, PKLR, IGFBP1, PLAUR, CAVIN3, CCN5, LARGE1, NOCT, S100A4, RRAGD, ZFP36, EGFR, EDN2, IDS, CDKN1A, RORA, DUSP1, MIF, PPP1R3C, DPYSL4, KDELR3, DTNA, ADORA2B, HS3ST1, CAVIN1, NR3C1, KLF6, GPC4, CCN1, TNFAIP3, CA12, HEXA, BGN, PPP1R15A, PGM2, PIM1, PRDX5, NAGK, CDKN1B, BRS3, TKTL1, MT1E, ATP7A, MT2A, SDC3, TIPARP, PKP1, ANXA2, PGAM2, DDIT3, PRKCA, SLC37A4, CXCR4, EFNA3, CP, KLF7, CCN2, CHST3, TPD52, LXN, B4GALNT2, PPARGC1A, BCL2, GCNT2, HAS1, KLHL24, SCARB1, SLC25A1, SDC2, CASP6, VHL, FOXO3, PDGFB, B3GALT6, SLC2A5, SRPX, EFNA1, GLRX, ACKR3, PAM, TGFBI, DCN, SIAH2, PLAC8, FBP1, TPST2, PHKG1, MYH9, CDKN1C, GRHPR, PCK1, INHA, HSPA5, NDST2, NEDD4L, TPBG, XPNPEP1, IL6, SLC6A6, MAP3K1, LDHC, AKAP12, TES, KIF5A, LALBA, COL5A1, GPC1, HDLBP, ILVBL, NCAN, TGM2, ETS1, HOXB9, SELENBP1, FOSL2, SULT2B1, TGFB3
##
## Gene Set: HALLMARK_CHOLESTEROL_HOMEOSTASIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_CHOLESTEROL_HOMEOSTASIS
## Genes: FDPS, CYP51A1, IDI1, FDFT1, DHCR7, SQLE, HMGCS1, NSDHL, LSS, MVD, LDLR, TM7SF2, ALDOC, EBP, SCD, PMVK, MVK, LPL, SC5D, FADS2, HMGCR, HSD17B7, ANXA13, SREBF2, PCYT2, ACSS2, ATF3, ADH4, ETHE1, ECH1, CBS, GUSB, FASN, LGALS3, ATF5, ANXA5, TP53INP1, CHKA, GSTM2, ACAT2, AVPR1A, PLSCR1, CLU, ERRFI1, TRIB3, CXCL16, TNFRSF12A, ACTG1, JAG1, LGMN, FBXO6, GPX8, PNRC1, ANTXR2, MAL2, CD9, PPARG, GLDC, STX5, STARD4, CTNNB1, TMEM97, NIBAN1, PDK3, PLAUR, SEMA3B, GNAI1, ABCA2, ATXN2, NFIL3, ALCAM, FABP5, S100A11, CPEB2
##
## Gene Set: HALLMARK_MITOTIC_SPINDLE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MITOTIC_SPINDLE
## Genes: ARHGEF2, CLASP1, KIF11, KIF23, ALS2, ARF6, MYO9B, MYH9, TUBGCP3, CKAP5, RACGAP1, PREX1, ARHGEF3, NUMA1, SPTBN1, KIF2C, KIF5B, TTK, APC, CEP250, PAFAH1B1, CDC42EP2, KIF3B, CCDC88A, KIF15, BIRC5, CNTROB, NF1, TSC1, CDC27, CNTRL, TUBGCP5, KIF4A, MAPRE1, FGD6, BRCA2, PLK1, RASA1, NEK2, WASF1, TOP2A, TRIO, ARHGEF11, KATNB1, PRC1, ANLN, CDK5RAP2, SMC3, TUBGCP2, ESPL1, MAP1S, ARHGAP27, DOCK4, SAC3D1, INCENP, ARHGAP5, GSN, NET1, LRPPRC, RABGAP1, FLNB, ARAP3, FGD4, ABR, CENPJ, NCK1, CENPF, KIF20B, WASF2, MYH10, CENPE, CYTH2, MID1, KLC1, MARK4, ARL8A, CEP57, UXT, ARHGAP4, CDC42EP4, SASS6, LATS1, OPHN1, WASL, MAP3K11, SOS1, ABL1, TIAM1, KIF1B, ITSN1, SHROOM1, NCK2, DLGAP5, BCR, RANBP9, EPB41L2, SEPTIN9, KATNA1, TUBD1, TPX2, KIF3C, SHROOM2, TUBGCP6, SPTAN1, PALLD, ARFIP2, KNTC1, HOOK3, SUN2, MID1IP1, DLG1, FLNA, ARHGAP10, CDC42BPA, ARHGEF12, MARCKS, NIN, PCM1, RALBP1, EZR, SSH2, CDK1, RAB3GAP1, FARP1, SYNPO, RHOF, ECT2, EPB41, RAPGEF6, KIF22, PCGF5, STAU1, ARHGDIA, AURKA, FBXO5, NUSAP1, PXN, BCAR1, CD2AP, AKAP13, HDAC6, CEP131, LLGL1, ATG4B, PCNT, ALMS1, KPTN, DST, KIFAP3, PPP4R2, ARHGAP29, RASAL2, CCNB2, PIF1, RASA2, NEDD9, SMC1A, ACTN4, PKD2, CLIP2, CDC42, NDC80, TLK1, TAOK2, TBCD, CAPZB, DOCK2, CTTN, SMC4, ARFGEF1, TUBA4A, LMNB1, ABI1, ROCK1, CEP192, BUB1, GEMIN4, PLEKHG2, RICTOR, BCL2L11, DYNC1H1, FSCN1, ARHGEF7, DYNLL2, MYO1E, BIN1, NOTCH2, RFC1, PDLIM5, RHOT2, SORBS2, CDC42EP1, VCL, CLIP1, STK38L, YWHAE, RAPGEF5, CEP72, CSNK1D
##
## Gene Set: HALLMARK_WNT_BETA_CATENIN_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_WNT_BETA_CATENIN_SIGNALING
## Genes: MYC, CTNNB1, JAG2, NOTCH1, DLL1, AXIN2, PSEN2, FZD1, NOTCH4, LEF1, AXIN1, NKD1, WNT5B, CUL1, JAG1, MAML1, KAT2A, GNAI1, WNT6, PTCH1, NCOR2, DKK4, HDAC2, DKK1, TCF7, WNT1, NUMB, ADAM17, DVL2, PPARD, NCSTN, HDAC5, CCND2, FRAT1, CSNK1E, RBPJ, FZD8, TP53, SKP2, HEY2, HEY1, HDAC11
##
## Gene Set: HALLMARK_TGF_BETA_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_TGF_BETA_SIGNALING
## Genes: TGFBR1, SMAD7, TGFB1, SMURF2, SMURF1, BMPR2, SKIL, SKI, ACVR1, PMEPA1, NCOR2, SERPINE1, JUNB, SMAD1, SMAD6, PPP1R15A, TGIF1, FURIN, SMAD3, FKBP1A, MAP3K7, BMPR1A, CTNNB1, HIPK2, KLF10, BMP2, ENG, APC, PPM1A, XIAP, CDH1, ID1, LEFTY2, CDKN1C, TRIM33, RAB31, TJP1, SLC20A1, CDK9, ID3, NOG, ARID4B, IFNGR2, ID2, PPP1CA, SPTBN1, WWTR1, BCAR3, THBS1, FNTA, HDAC1, UBE2D3, LTBP2, RHOA
##
## Gene Set: HALLMARK_IL6_JAK_STAT3_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_IL6_JAK_STAT3_SIGNALING
## Genes: IL4R, IL6ST, STAT1, IL1R1, CSF2RB, SOCS3, STAT3, OSMR, IL2RG, IFNGR1, TYK2, IL13RA1, TLR2, IFNGR2, IL10RB, IL6, IL1R2, IL3RA, IFNAR1, TNFRSF1A, MYD88, ACVR1B, CSF3R, ITGB3, REG1A, CXCL1, A2M, CSF2RA, IL15RA, IRF9, PDGFC, HAX1, BAK1, EBI3, INHBE, CRLF2, TNFRSF1B, CD14, PTPN1, PTPN2, IL1B, CSF1, IL18R1, TNF, PF4, CXCL13, LTBR, FAS, IL17RA, CXCL10, IL9R, STAM2, TNFRSF12A, STAT2, HMOX1, LEPR, CBL, CD9, CXCL3, TGFB1, MAP3K8, ITGA4, CD38, JUN, SOCS1, ACVRL1, PIM1, TNFRSF21, PIK3R5, GRB2, IRF1, DNTT, CSF2, IL2RA, PTPN11, IL12RB1, CCR1, CNTFR, PLA2G2A, CXCL9, CD44, IL7, CXCL11, CCL7, LTB, IL17RB, CD36
##
## Gene Set: HALLMARK_DNA_REPAIR
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_DNA_REPAIR
## Genes: POLR2H, POLR2A, POLR2G, POLR2E, POLR2J, POLR2F, POLR2C, POLR2K, GTF2H3, POLR2D, ERCC3, DDB2, POLR1C, XPC, PCNA, POLR2I, SUPT4H1, POLD3, POLR3GL, POLR3C, GTF2B, POLR1D, NCBP2, NELFE, GTF2F1, ERCC5, LIG1, ERCC1, ERCC4, POLD4, NELFB, RFC2, ELL, TAF10, RRM2B, SUPT5H, RPA3, SNAPC5, SSRP1, RFC3, RPA2, ELOA, TAF12, NELFCD, TAF13, TAF6, TAF9, GTF2A2, VPS37D, NME1, RNMT, ERCC2, POLE4, VPS37B, NT5C3A, SNAPC4, AAAS, POLR1H, RFC4, ITPA, POM121, BRF2, RFC5, SAC3D1, CLP1, NME4, PRIM1, VPS28, TSG101, USP11, TAF1C, TARBP2, POLH, CETN2, POLD1, CANT1, PDE4B, DGCR8, RAD51, SURF1, PNP, ADA, NME3, GTF3C5, NT5C, AK1, GTF2H1, HCLS1, APRT, ERCC8, IMPDH2, POLB, SDCBP, SF3A3, DAD1, UPF3B, GUK1, TP53, ADRM1, SEC61A1, POLA2, FEN1, ZNF707, NUDT9, PDE6G, TYMS, BCAP31, DDB1, NFX1, RAD52, ADCY6, ARL6IP1, DGUOK, POLL, SMAD5, MPG, DUT, POLA1, AGO4, RALA, ZWINT, BCAM, TK2, CSTF3, GTF2H5, HPRT1, BOLA2, GPX4, MPC2, CDA, ALYREF, MRPL40, NPR2, REV3L, EDF1, GSDME, TMED2, STX3, RAE1, UMPS, EIF1B, AK3, NUDT21, RBX1, SRSF6, GMPR2, DCTN4, COX17, CMPK2, CCNO
##
## Gene Set: HALLMARK_G2M_CHECKPOINT
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_G2M_CHECKPOINT
## Genes: AURKA, CCNA2, TOP2A, CCNB2, CENPA, BIRC5, CDC20, PLK1, TTK, PRC1, NDC80, KIF11, NUSAP1, CKS2, KIF2C, MKI67, AURKB, TPX2, SMC4, BUB1, CENPF, RACGAP1, CENPE, KIF23, UBE2C, MCM6, MCM3, PTTG1, CDK1, KIF4A, ESPL1, MAD2L1, NEK2, KIF22, HMMR, KPNA2, CDKN3, CDC25A, H2AX, CDC25B, PLK4, CDC6, CCNF, MCM5, LMNB1, E2F3, KIF15, CHEK1, UBE2S, NSD2, HMGB3, DBF4, TACC3, MCM2, CDKN2C, CDKN1B, FANCC, NASP, STAG1, GINS2, FBXO5, POLQ, EZH2, RAD21, STMN1, SUV39H1, PRIM2, E2F1, CHAF1A, NOLC1, GSPT1, BUB3, SMC1A, ILF3, CDC7, INCENP, CKS1B, EXO1, H2AZ1, TFDP1, CCND1, KPNB1, JPT1, LBR, HUS1, KIF20B, TOP1, PDS5B, SRSF1, STIL, ABL1, DTYMK, CDC27, BARD1, ATF5, CDC45, ODC1, XPO1, SFPQ, TMPO, PML, BRCA2, CTCF, KNL1, KMT5A, SLC38A1, TRA2B, MYBL2, TROAP, TENT4A, CUL3, MAPK14, H2BC12, MYC, AMD1, CBX1, CHMP1A, DKC1, YTHDC1, CCNT1, TGFB1, ATRX, LIG3, NUP50, SLC7A5, RBL1, NUMA1, RAD54L, EFNA5, PRPF4B, UCK2, ARID4A, CUL1, UPF1, DR1, MNAT1, SMC2, RBM14, RPA2, SQLE, ORC6, CDK4, POLE, RASAL2, HOXC10, RPS6KA5, CUL4A, SLC7A1, FOXN3, HMGA1, SS18, TRAIP, PRMT5, CUL5, DDX39A, MARCKS, PBK, ORC5, SAP30, KATNA1, HNRNPD, POLA2, HIRA, HIF1A, SYNCRIP, TLE3, NCL, RAD23B, E2F2, EGF, HMGN2, SRSF10, SNRPD1, CASP8AP2, SMARCC1, SLC12A2, NOTCH2, TNPO2, SMAD3, MAP3K20, HSPA8, G3BP1, PTTG3P, DMD, MEIS1, HNRNPU, SRSF2, MT2A, NUP98, EWSR1, KIF5B, MTF2, E2F4, BCL3, PURA, MEIS2, PAFAH1B1, WRN, H2AZ2, ODF2
##
## Gene Set: HALLMARK_APOPTOSIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APOPTOSIS
## Genes: CASP3, CASP9, DFFA, CASP7, CFLAR, BIRC3, PMAIP1, CASP8, JUN, BCL2L11, MCL1, IL1B, SPTAN1, DIABLO, BAX, BIK, IL1A, BID, CDKN1A, GADD45A, DDIT3, CDKN1B, TNF, GSN, TNFSF10, CASP6, SQSTM1, FASLG, EGR3, CD44, FAS, IL18, IGFBP6, PRF1, DAP, CCND1, BTG3, F2R, SATB1, BNIP3L, CASP4, TNFRSF12A, CREBBP, RHOB, GPX3, PDGFRB, TSPO, CCND2, XIAP, TIMP1, CTNNB1, IRF1, HSPB1, ADD1, TIMP2, BTG2, TIMP3, LEF1, CASP1, GPX1, BCL10, IGF2R, CDC25B, AIFM3, CD38, PPP3R1, HGF, CLU, ATF3, LGALS3, LUM, LMNA, GADD45B, CDK2, IFNB1, RETSAT, SMAD7, SOD1, PTK2, ENO2, HMOX1, IER3, BCL2L10, CD2, GCH1, MMP2, VDAC2, TAP1, PLAT, IFNGR1, APP, BRCA1, ROCK1, PSEN1, DCN, PSEN2, SOD2, BMF, EREG, KRT18, TGFB2, RELA, WEE1, RARA, CD14, CD69, PEA15, DNAJC3, CASP2, CTH, PLCB2, BMP2, HMGB2, PLPPR4, H1-0, TGFBR3, EBP, TXNIP, ANKH, RHOT2, CYLD, GSTM1, GSR, BGN, BCL2L1, GNA15, MGMT, PPT1, F2, IL6, SC5D, IFITM3, RNASEL, EMP1, CAV1, DNM1L, ANXA1, TOP2A, ISG20, SLC20A1, MADD, PPP2R5B, BCAP31, ERBB3, NEDD9, SAT1, PDCD4, BCL2L2, FEZ1, ERBB2, DNAJA1, DAP3, DPYD, NEFH, PAK1, FDXR, GPX4, ETF1, CCNA1, GUCY2D, AVPR1A
##
## Gene Set: HALLMARK_NOTCH_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_NOTCH_SIGNALING
## Genes: JAG1, NOTCH3, NOTCH2, APH1A, HES1, CCND1, FZD1, PSEN2, FZD7, DTX1, DLL1, FZD5, MAML2, NOTCH1, PSENEN, WNT5A, CUL1, WNT2, DTX4, SAP30, PPARD, KAT2A, HEYL, SKP1, RBX1, TCF7L2, ARRB1, LFNG, PRKCA, DTX2, ST3GAL6, FBXW11
##
## Gene Set: HALLMARK_ADIPOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ADIPOGENESIS
## Genes: FABP4, ADIPOQ, PPARG, LIPE, DGAT1, LPL, CPT2, CD36, GPAM, ADIPOR2, ACAA2, ETFB, ACOX1, ACADM, HADH, IDH1, SORBS1, ACADS, UCK1, SCP2, DECR1, CDKN2C, TALDO1, TST, MCCC1, PGM1, REEP5, BCL2L13, SLC25A10, ME1, PHYH, PIM3, YWHAG, NDUFAB1, GPD2, ADIG, ECHS1, QDPR, CS, ECH1, SLC25A1, ACADL, TOB1, GRPEL1, CRAT, GBE1, CAVIN2, SCARB1, PEMT, CHCHD10, AK2, APOE, UQCR10, TANK, ANGPTL4, ACO2, FAH, ACLY, IFNGR1, SLC5A6, JAGN1, EPHX2, IDH3G, GPX3, ELMOD3, ORM1, RETSAT, ESRRA, HIBCH, SUCLG1, STAT5A, ITGA7, MRAP, PLIN2, CYC1, ALDH2, RNF11, ALDOA, SULT1A1, DDT, SDHB, CD151, SLC27A1, BCKDHA, C3, LEP, ADCY6, ELOVL6, LTC4S, SPARCL1, RMDN3, MTCH2, SOWAHC, SLC1A5, CMPK1, REEP6, NDUFA5, FZD4, DRAM2, MGST3, ATP1B3, RETN, STOM, ESYT1, GHITM, DNAJC15, GADD45A, VEGFB, PFKL, COQ3, NABP1, CYP4B1, PPM1B, ARAF, CAVIN1, COL4A1, IMMT, DHRS7, COL15A1, NMT1, COQ5, LAMA4, AGPAT3, BAZ2A, IDH3A, LIFR, PREB, PTGER3, GPHN, PFKFB3, GPX4, SSPN, SQOR, MTARC2, DLD, ITIH5, CD302, ATL2, GPAT4, LPCAT3, TKT, UQCRC1, CAT, OMD, DLAT, MRPL15, RIOK3, RTN3, CHUK, G3BP2, SDHC, SAMM50, ARL4A, SNCG, PDCD4, COQ9, APLP2, SOD1, PTCD3, PHLDB1, ENPP2, HSPB8, AIFM1, CCNG2, PPP1R15B, MDH2, ABCA1, COX7B, MYLK, COX8A, DHRS7B, MIGA2, MGLL, ITSN1, DHCR7, RREB1, CMBL, UBC, ATP5PO, PRDX3, DBT, NDUFS3, NKIRAS1, RAB34, CIDEA, UQCRQ, PEX14, BCL6, COX6A1, DNAJB9, MAP4K3, ANGPT1, UBQLN1, NDUFB7, SLC19A1, ABCB8, SLC66A3, POR, UCP2, UQCR11
##
## Gene Set: HALLMARK_ESTROGEN_RESPONSE_EARLY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ESTROGEN_RESPONSE_EARLY
## Genes: GREB1, CA12, SLC9A3R1, MYB, ANXA9, IGFBP4, SYBU, NPY1R, PDZK1, NRIP1, MLPH, HSPB8, EGR3, KRT19, LRIG1, KDM4B, PGR, RHOBTB3, TPD52L1, ELOVL2, RET, TPBG, TFF1, MAPT, SCNN1A, ABAT, FLNB, XBP1, CELSR2, RAB31, MYBL1, MREG, FAM102A, MSMB, STC2, RETREG1, SIAH2, ZNF185, SLC19A2, SLC1A4, FHL2, BCL2, PMAIP1, AREG, OVOL2, TSKU, ADCY9, RASGRP1, MUC1, KAZN, SLC27A2, FKBP4, CXCL12, TMPRSS3, RARA, IL17RB, CBFA2T3, TFF3, UGCG, CCND1, SLC22A5, WFS1, PTGES, WWC1, CCN5, MYC, ITPK1, TMEM164, ARL3, MED13L, SEMA3B, KRT18, SLC16A1, TJP3, SLC26A2, FCMR, SULT2B1, SNX24, TFAP2C, TTC39A, GJA1, PRSS23, OLFM1, RAPGEFL1, ASB13, TIPARP, ABCA3, FRK, DHRS2, AQP3, KCNK15, TGIF2, FOXC1, ELF3, REEP1, PEX11A, PODXL, KLF4, BAG1, CELSR1, PLAAT3, SLC7A5, MPPED2, TIAM1, CLDN7, MYOF, RBBP8, OLFML3, GFRA1, FARP1, SVIL, TGM2, DEPTOR, CYP26B1, PAPSS2, SLC1A1, DLC1, JAK2, AFF1, KLK10, P2RY2, BLVRB, CISH, GLA, ADD3, PDLIM3, MINDY1, FOS, KRT8, SLC37A1, B4GALT1, CALCR, ESRP2, IGF1R, NBL1, SFN, OPN3, ABHD2, AR, SLC39A6, SYT12, CD44, MED24, BCL11B, CANT1, KRT13, KRT15, TOB1, SLC7A2, LAD1, TUBB2B, TBC1D30, SEC14L2, ENDOD1, HR, SCARB1, NCOR2, RHOD, INPP5F, PPIF, DHRS3, FDFT1, GAB2, UNC119, KLF10, HES1, FKBP5, SLC2A1, AMFR, NADSYN1, INHBB, BHLHE40, CALB2, FASN, CHPT1, MYBBP1A, ELOVL5, DYNLT3, ABLIM1, SOX3, SLC24A3, RAB17, MAST4, KCNK5, ELF1, RPS6KA2, ISG20L2, IL6ST, SYNGR1, SH3BP5, ALDH3B1, THSD4, CLIC3, NXT1, NAV2, RRP12, ADCY1, DHCR7, MICB, AKAP1
##
## Gene Set: HALLMARK_ESTROGEN_RESPONSE_LATE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ESTROGEN_RESPONSE_LATE
## Genes: TFF1, SLC9A3R1, TPD52L1, PRSS23, CA12, PDZK1, ANXA9, CELSR2, TJP3, PGR, RET, MYB, TPBG, EGR3, ARL3, OLFM1, NPY1R, SCNN1A, XBP1, AREG, IL17RB, NRIP1, ASS1, TFF3, FKBP4, SLC27A2, SEMA3B, GPER1, LLGL2, AGR2, KRT19, CCN5, BLVRB, FLNB, PDCD4, CALCR, IGFBP4, DNAJC12, TIAM1, TSPAN13, CXCL12, RAB31, PKP3, CYP26B1, FKBP5, SIAH2, ISG20, TMPRSS3, SERPINA3, WFS1, MAPT, PDLIM3, RBBP8, GJB3, PRLR, SLC1A4, FOS, PLAAT3, SLC7A5, SERPINA5, IMPA2, DHCR7, MYOF, CDH1, EMP2, OVOL2, DLG5, SOX3, CHPT1, KLK10, ELOVL5, RAPGEFL1, JAK2, SLC26A2, SLC22A5, ITPK1, PCP4, PAPSS2, NAB2, FAM102A, BCL2, LSR, CACNA2D2, CA2, ASCL1, ACOX2, CISH, GLA, PTGES, PERP, OPN3, KRT13, HSPB8, UGDH, CLIC3, KLK11, PLAC1, ABHD2, SCARB1, DCXR, CCND1, SFN, ABCA3, SULT2B1, CCNA1, STIL, MICB, ZFP36, CAV1, NBL1, CD44, HR, HOMER2, BTG3, GAL, ETFB, BAG1, FRK, SLC16A1, AFF1, TFAP2C, IGSF1, HPRT1, CDC6, FARP1, AMFR, DHRS2, NXT1, S100A9, SLC29A1, SLC24A3, FOXC1, KIF20A, TOB1, FDFT1, DNAJC1, TPSAB1, GFUS, FGFR3, SGK1, ID2, GALE, BATF, MAPK13, FABP5, MEST, JAK1, CYP4F11, KCNK5, CPE, XRCC3, CXCL14, SCUBE2, CDC20, IL6ST, GINS2, TRIM29, UNC13B, LAMC2, LARGE1, SLC2A8, PLXNB1, PRKAR2B, RPS6KA2, HSPA4L, TFPI2, SERPINA1, TNNC1, HMGCS2, ALDH3A2, CD9, IDH2, SORD, MDK, ALDH3B1, PTGER3, RABEP1, KLF4, PPIF, SNX10, METTL3, PLK4, COX6C, ST14, NCOR2, MOCS2, NMU, TH, RNASEH2A, CHST8, TST, TOP2A, CKB, LTF, DUSP2, PTPN6, ATP2B4, ST6GALNAC2, ADD3, DYNLT3
##
## Gene Set: HALLMARK_ANDROGEN_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ANDROGEN_RESPONSE
## Genes: KLK3, KLK2, ACSL3, PIAS1, CAMKK2, NKX3-1, TMPRSS2, APPBP2, CENPN, BMPR1B, MAF, FADS1, ZBTB10, HMGCR, SPCS3, INSIG1, NGLY1, UBE2J1, ELK4, ABCC4, ELOVL5, ALDH1A3, TARP, AZGP1, ABHD2, SAT1, DBI, DHCR24, SORD, STK39, TPD52, IDI1, B2M, MAP7, DNAJB9, FKBP5, HERC3, PGM3, HOMER2, ELL2, UAP1, SEC24D, LMAN1, PMEPA1, INPP4B, RRP12, SELENOP, NDRG1, KRT19, ITGAV, B4GALT1, MAK, SPDEF, GSR, KRT8, LIFR, PLPP1, STEAP4, GUCY1A1, SRP19, CCND3, IQGAP2, RAB4A, SLC26A2, SMS, ZMIZ1, SGK1, MERTK, HPGD, ANKH, GNAI3, SRF, SLC38A2, HMGCS1, ARID5B, CDC14B, TNFAIP8, XRCC5, GPD1L, ACTN1, RPS6KA3, TSC22D1, PDLIM5, TMEM50A, ADAMTS1, NCOA4, AKAP12, SCD, PTK2B, CDK6, ADRM1, H1-0, HSD17B14, VAPA, CCND1, XRCC6, MYL12A, UBE2I, PTPN21, AKT1, PA2G4
##
## Gene Set: HALLMARK_MYOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYOGENESIS
## Genes: ACTA1, TNNI2, MYL1, TNNC1, TNNC2, MYH3, MYL11, TNNT3, TNNT2, CASQ2, ACTC1, MYOM1, MYL4, MYBPH, MYH7, MYH8, ACTN2, TNNI1, CRYAB, SGCG, HRC, TNNT1, DES, MYOZ1, RYR1, CSRP3, ADAM12, ATP2A1, CKM, SVIL, MYOM2, MYL6B, TPM2, MYL2, CKMT2, BIN1, MYH1, ENO3, FLII, FXYD1, TPM3, DMD, IGFBP3, CHRNB1, SPEG, FHL1, ACTN3, TCAP, MYLK, MYL3, PYGM, LDB3, COX6A2, FABP3, MYL7, ITGB5, CHRNA1, SSPN, COL3A1, KCNH1, GJA5, MYF6, MYH2, MAPK12, PGAM2, MYOG, MYH4, AEBP1, HBEGF, MEF2C, NOS1, CNN3, IGFBP7, CACNA1H, GSN, CACNG1, PPFIA4, MB, SPHK1, SCHIP1, MEF2D, SMTN, CDKN1A, GAA, TPD52L1, HSPB2, SGCA, BDKRB2, COX7A1, COL4A2, PLXNB2, CTF1, COL15A1, KCNH2, AGRN, MYO1C, SIRT2, SGCD, SORBS1, VIPR1, FGF2, FKBP1B, TEAD4, CASQ1, KLF5, PDLIM7, AK1, TAGLN, RIT1, MEF2A, ANKRD2, AKT2, LAMA2, DENND2B, IFRD1, NCAM1, SYNGR2, PICK1, COL6A3, CRAT, DMPK, MYH11, MYH9, IGF1, CKB, FST, GPX3, PVALB, PTP4A3, ITGB1, HSPB8, ACHE, CHRNG, PKIA, NAV2, HDAC5, ATP6AP1, CLU, ACSL1, COL1A1, MRAS, PDE4DIP, AGL, ERBB3, GABARAPL2, CAV3, BHLHE40, PPP1R3C, LARGE1, LPIN1, CDH13, NQO1, PRNP, PSEN2, DAPK2, LSP1, SLC6A8, REEP1, EIF4A2, SH2B1, MYBPC3, ITGA7, SPTAN1, SORBS3, PC, SCD, GNAO1, STC2, CFD, RB1, BAG1, ABLIM1, PTGIS, MAPRE3, OCEL1, SH3BGR, NOTCH1, TSC2, TGFB1, FDPS, CAMK2B, EPHB3, GADD45B, APP, APLNR, ITGB4, SOD3, FOXO4, EFS, PFKM, COL6A2, DTNA, KIFC3, SPARC, SPDEF, SLN, WWTR1, CD36, ADCY9, APOD
##
## Gene Set: HALLMARK_PROTEIN_SECRETION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PROTEIN_SECRETION
## Genes: ARCN1, TMED10, COPB2, RAB14, ATP7A, COPB1, LAMP2, EGFR, IGF2R, COPE, PPT1, AP3S1, BET1, CLCN3, AP2S1, CLTC, AP2M1, RER1, KIF1B, ARF1, OCRL, ICA1, MON2, ARFGEF2, TMED2, NAPG, TMX1, PAM, SCAMP1, SH3GL2, RAB2A, COG2, VAMP3, ERGIC3, DOP1A, VAMP4, VPS4B, NAPA, GNAS, STX7, SEC22B, VPS45, STX16, YKT6, SNX2, ARFGEF1, CLTA, CLN5, M6PR, SGMS1, USO1, TSG101, DNM1L, LMAN1, YIPF6, ARFIP1, ANP32E, TSPAN8, DST, SCRN1, SEC31A, VAMP7, SCAMP3, AP2B1, RAB22A, AP3B1, TPD52, ATP6V1H, GBF1, KRT18, CAV2, ATP1A1, BNIP3, ZW10, GALC, ADAM10, RAB5A, GOLGA4, SEC24D, AP1G1, MAPK1, GOSR2, RPS6KA3, STAM, ABCA1, SNAP23, SOD1, GLA, ATP6V1B1, STX12, CD63, TOM1L1, SSPN, ARFGAP3, RAB9A, CTSC
##
## Gene Set: HALLMARK_INTERFERON_ALPHA_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INTERFERON_ALPHA_RESPONSE
## Genes: MX1, ISG15, OAS1, IFIT3, IFI44, IFI35, IRF7, RSAD2, IFI44L, IFITM1, IFI27, IRF9, OASL, EIF2AK2, IFIT2, CXCL10, TAP1, SP110, DDX60, UBE2L6, USP18, PSMB8, IFIH1, BST2, LGALS3BP, ADAR, ISG20, GBP2, IRF1, PLSCR1, PSMB9, HERC6, SAMD9, CMPK2, IFITM3, RTP4, STAT2, SAMD9L, LY6E, IFITM2, HELZ2, CXCL11, TRIM21, PARP14, TRIM26, PARP12, NMI, RNF31, HLA-C, CASP1, TRIM14, TDRD7, DHX58, PARP9, PNPT1, TRIM25, PSME1, WARS1, EPSTI1, UBA7, PSME2, B2M, TRIM5, C1S, LAP3, LAMP3, GBP4, NCOA7, TMEM140, CD74, GMPR, PSMA3, PROCR, IL7, IFI30, IRF2, CSF1, IL15, CNP, TENT5A, IL4R, CMTR1, CD47, LPAR6, MOV10, CASP8, TXNIP, SLC25A28, SELL, TRAFD1, BATF2, RIPK2, CCRL2, NUB1, OGFR, MVB12A, ELF1
##
## Gene Set: HALLMARK_INTERFERON_GAMMA_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INTERFERON_GAMMA_RESPONSE
## Genes: STAT1, ISG15, IFIT1, MX1, IFIT3, IFI35, IRF7, IFIT2, OAS2, TAP1, EIF2AK2, RSAD2, MX2, IRF1, OAS3, TNFSF10, IRF9, CXCL10, IFI44, BST2, XAF1, SP110, OASL, PSMB8, IFI44L, IFITM3, DDX60, LGALS3BP, GBP4, IRF8, PSMB9, PML, IFIH1, UBE2L6, IFI27, ADAR, LY6E, STAT2, CXCL9, IL10RA, PLA2G4A, TRIM21, USP18, PTGS2, EPSTI1, C1S, RIGI, IL15, NLRC5, NMI, IDO1, PSMB10, CXCL11, ITGB7, SAMHD1, HERC6, CMPK2, SAMD9L, RTP4, PTPN2, PARP14, TNFAIP2, IFITM2, PLSCR1, SOCS1, CASP1, ICAM1, WARS1, PSME1, ISG20, IRF2, TRIM14, FCGR1A, MARCHF1, SOCS3, JAK2, HLA-DMA, PARP12, TNFAIP6, TRIM26, VCAM1, CD274, CIITA, NAMPT, SELP, GPR18, FPR1, HELZ2, PSME2, SERPING1, CCL5, RNF31, SOD2, TRIM25, LAP3, PSMA3, RNF213, PELI1, CFB, CD86, TXNIP, HLA-DQA1, GCH1, PNP, CCL7, PTPN6, SPPL2A, IL4R, PNPT1, DHX58, BTG1, CASP8, IFI30, CCL2, FGL2, CASP7, SECTM1, IL15RA, CD40, TRAFD1, HLA-DRB1, GBP6, LCP2, HLA-G, MT2A, RIPK1, KLRK1, UPP1, PSMB2, TDRD7, HIF1A, EIF4E3, VAMP8, PFKP, CD38, ZBP1, BANK1, TOR1B, RBCK1, PDE4B, MVP, IL7, BPGM, CMTR1, AUTS2, B2M, RIPK2, CD69, MYD88, PSMA2, PIM1, NOD1, CFH, TAPBP, SLC25A28, PTPN1, TNFAIP3, SSPN, NUP93, MTHFD2, CDKN1A, IRF4, NFKB1, BATF2, HLA-B, LATS2, IRF5, SLAMF7, ISOC1, P2RY14, STAT3, NCOA3, HLA-A, IL6, GZMA, IFNAR2, CD74, RAPGEF6, CASP4, FAS, OGFR, ARL4A, SRI, LYSMD2, CSF2RB, ST3GAL5, C1R, CASP3, CMKLR1, NFKBIA, METTL7B, ST8SIA4, XCL1, IL2RB, VAMP5, IL18BP, ZNFX1, ARID5B, APOL6, STAT4
##
## Gene Set: HALLMARK_APICAL_JUNCTION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APICAL_JUNCTION
## Genes: ACTN1, CLDN7, ACTN3, CLDN19, DLG1, TJP1, COL17A1, NECTIN1, CLDN9, CDH3, CTNND1, CDH1, LIMA1, VCL, SHROOM2, NECTIN3, NECTIN2, CLDN14, PTPRC, THY1, VASP, ITGB1, ZYX, ACTN4, CLDN4, CADM3, ITGA3, NF2, B4GALT1, NEXN, CDH6, ADAM15, PTK2, HADH, LAMB3, CLDN11, CDH4, IRS1, SORBS3, CLDN8, EVL, CLDN15, THBS3, NECTIN4, JAM3, CDH11, ITGB4, RASA1, AKT2, TMEM8B, LAMA3, RSU1, ICAM1, CLDN18, GTF2F1, TSC1, LAMC2, NRAP, CTNNA1, CD99, FSCN1, COL16A1, GNAI2, TGFBI, PALS1, JUP, ACTN2, INSIG1, LAYN, PFN1, CNN2, TAOK2, AMIGO2, MDK, INPPL1, CLDN6, ARPC2, SRC, PBX2, MAPK14, MAP4K2, PTEN, CALB2, CNTN1, TSPAN4, VCAN, CDH8, ATP1A3, EPB41L2, MYL9, SPEG, ADRA1B, SYK, CADM2, ALOX15B, CX3CL1, MYH10, DMP1, CDSN, MAPK13, MYL12B, RAC2, FBN1, DSC1, CD34, ICAM4, MSN, MAPK11, ACTC1, TRAF1, CRB3, ITGA2, ITGA10, BAIAP2, ARHGEF6, ACTG1, MVD, PDZD3, ADAM9, PCDH1, SLIT2, KRT31, SGCE, GNAI1, PIK3CB, NLGN2, YWHAH, PARVA, CRAT, ADAMTS5, AMH, EGFR, ICAM2, CD274, CDH15, SHC1, MPZL2, WNK4, NFASC, PIK3R3, SDC3, SIRPA, GRB7, FLNC, PARD6G, COL9A1, NRXN2, MAP3K20, SLC30A3, RHOF, BMP1, MMP2, ICAM5, VWF, MYH9, CD209, VCAM1, DHX16, ACTG2, NEGR1, NF1, ADAM23, PLCG1, KCNH2, CERCAM, NRTN, IKBKG, DSC3, ACTB, TUBG1, PPP2R2C, HRAS, MMP9, TNFRSF11B, PKD1, CDK8, FYB1, AMIGO1, CD276, GAMT, NLGN3, SKAP2, RRAS, CAP1, EXOC4, ACTA1, TIAL1, LDLRAP1, VAV2, AKT3, SYMPK, STX4, PECAM1, MADCAM1, ITGA9, CD86, TRO, CLDN5, MPZL1, WASL
##
## Gene Set: HALLMARK_APICAL_SURFACE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APICAL_SURFACE
## Genes: B4GALT1, RHCG, MAL, LYPD3, PKHD1, ATP6V0A4, CRYBG1, SHROOM2, SRPX, MDGA1, TMEM8B, THY1, PCSK9, EPHB4, DCBLD2, GHRL, LYN, GAS1, FLOT2, PLAUR, AKAP7, ATP8B1, EFNA5, SLC34A3, APP, GSTM3, HSPB1, SLC2A4, IL2RB, RTN4RL1, NCOA6, SULF2, ADAM10, BRCA1, GATA3, AFAP1L2, IL2RG, CD160, ADIPOR2, SLC22A12, NTNG1, SCUBE1, CX3CL1, CROCC
##
## Gene Set: HALLMARK_HEDGEHOG_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HEDGEHOG_SIGNALING
## Genes: SHH, PTCH1, NRCAM, NRP1, SCG2, AMOT, UNC5C, ADGRG1, HEY1, GLI1, THY1, SLIT1, CDK6, HEY2, NRP2, TLE3, TLE1, L1CAM, PLG, NKX6-1, NF1, RASA1, ETS2, RTN1, CRMP1, MYH9, VEGFA, CELSR1, CNTFR, ACHE, PML, CDK5R1, VLDLR, OPHN1, LDB1, DPYSL2
##
## Gene Set: HALLMARK_COMPLEMENT
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_COMPLEMENT
## Genes: C2, C1S, CFB, C1R, SERPINE1, MMP14, SERPING1, CTSL, F5, MMP13, F7, CTSS, LGMN, PLG, C1QA, CASP1, GZMA, ADAM9, CALM3, C1QC, TIMP1, DPP4, KLK1, KLKB1, CD59, CR2, MMP15, LAP3, SPOCK2, F10, CTSB, SERPINA1, CTSO, CD40LG, CBLB, PDP1, C4BPB, PLEK, GP9, PLAUR, C3, F2, CASP4, STX4, CTSC, USP15, CR1, DUSP6, SERPINB2, GPD2, CFH, FN1, CD36, CA2, PSMB9, APOBEC3G, FCN1, GZMK, PDGFB, CLU, CASP10, LRP1, CTSD, S100A9, WAS, BRPF3, PLAT, CDA, MT3, CASP7, PRSS36, PFN1, GZMB, RNF4, ZEB1, CASP5, IRF1, CPQ, CDK5R1, ATOX1, PIK3CA, TMPRSS6, CPM, RCE1, CALM1, DOCK9, KYNU, RASGRP1, USP14, LCP2, GP1BA, KIF2A, GNB4, LCK, OLR1, PREP, MSRB1, LTA4H, ZFPM2, LYN, ACTN2, SIRT6, APOC1, PRKCD, ITGAM, DGKH, LTF, MAFF, KCNIP2, PCLO, DOCK10, SH2B3, RABIF, SRC, HPCAL4, CD46, PRDM4, GNAI3, C9, PPP2CB, IRF2, FYN, JAK2, PLA2G4A, PRCP, USP8, RHOG, L3MBTL4, LAMP2, PIM1, CXCL1, F3, GNAI2, CASP9, XPNPEP1, PLSCR1, IRF7, CD55, HSPA5, GNB2, DYRK2, PLA2G7, S100A12, GRB2, PHEX, GNGT2, DOCK4, MMP12, KCNIP3, FDX1, TIMP2, MMP8, FCER1G, RBSN, ANXA5, CTSV, GCA, EHD1, PRSS3, COL4A2, CSRP1, PIK3R5, SERPINC1, ANG, APOBEC3F, GATA3, DUSP5, CASP3, USP16, CP, PSEN1, LIPA, PCSK9, DGKG, GNG2, ME1, GMFB, SCG3, PPP4C, CCL5, CTSH, F8, APOA4, IL6, AKAP10, ERAP2, VCPIP1, HSPA1A, RAF1, NOTCH4, ADRA2B, CEBPB, HNF4A, LGALS3, TNFAIP3, CDH13, ITIH1, TFPI2, PIK3CG, S100A13
##
## Gene Set: HALLMARK_UNFOLDED_PROTEIN_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UNFOLDED_PROTEIN_RESPONSE
## Genes: ATF4, HERPUD1, PARN, EXOSC4, HSP90B1, XBP1, EXOSC9, HSPA5, ATF3, EXOSC1, EXOSC5, ASNS, ARFGAP1, WFS1, SRPRB, DNAJB9, TSPYL2, NFYA, CALR, KHSRP, DNAJC3, EXOSC2, NOP14, ATF6, HYOU1, RRP9, NOP56, CXXC1, IGFBP1, CNOT4, DCP2, PDIA6, ATP6V0D1, PREB, SEC31A, GOSR2, SERP1, NFYB, NHP2, DCTN1, SLC7A5, SSR1, EDEM1, EDC4, EIF2AK3, MTHFD2, SRPRA, NOLC1, ERN1, FKBP14, ZBTB17, WIPI1, YIF1A, CCL2, DKC1, EIF4EBP1, EIF4A1, EIF2S1, TATDN2, XPOT, LSM4, CHAC1, STC2, PDIA5, NABP1, LSM1, SDAD1, EIF4A2, EIF4E, IARS1, DDX10, GEMIN4, TARS1, ALDH18A1, DDIT4, HSPA9, SEC11A, EIF4A3, POP4, ERO1A, CEBPG, BAG3, KDELR3, CEBPB, CNOT2, SHC1, SPCS3, H2AX, SLC1A4, RPS14, NPM1, CNOT6, CKS1B, PSAT1, EIF4G1, YWHAZ, SLC30A5, MTREX, KIF5B, DCP1A, IFIT1, IMP3, SPCS1, DNAJA4, VEGFA, SKIC3, TUBB2A, FUS, EXOSC10, EEF2, EXOC2, PAIP1, BANF1
##
## Gene Set: HALLMARK_PI3K_AKT_MTOR_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PI3K_AKT_MTOR_SIGNALING
## Genes: MAPK8, PIK3R3, GRB2, NFKBIB, MAP2K6, MAPK9, AKT1, MAPK1, PLCG1, TRIB3, GSK3B, MAP2K3, CDKN1A, RAC1, RIPK1, AKT1S1, ACTR2, PRKAR2A, YWHAB, HRAS, PDK1, PIKFYVE, TBK1, ACTR3, E2F1, MYD88, ITPR2, SQSTM1, RPS6KA1, PTPN11, MAPKAP1, PLCB1, RAF1, CAMK4, RPTOR, CFL1, CDK4, TRAF2, GNGT1, UBE2N, ADCY2, CDKN1B, VAV3, FGF6, ECSIT, RALB, ARF1, MKNK1, CDK1, PTEN, ARHGDIA, GRK2, FGF17, DDIT3, IRAK4, TIAM1, CDK2, SFN, PRKCB, GNA14, EIF4E, CLTC, TSC2, FGF22, PPP1CA, DUSP3, HSP90B1, IL4, STAT2, SLA, EGFR, PLA2G12A, MAPK10, CALR, THEM4, RIT1, MKNK2, PPP2R1B, CAB39L, ARPC3, PITX2, NCK1, IL2RG, PFN1, FASLG, NOD1, DAPP1, UBE2D3, CAB39, AP2M1, MAP3K7, PRKAG1, CSNK2B, PRKAA2, ATF1, SLC2A1, PIN1, TNFRSF1A, LCK, RPS6KA3, NGF, CXCR4, ACACA, SMAD2, PAK4
##
## Gene Set: HALLMARK_MTORC1_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MTORC1_SIGNALING
## Genes: FADS1, DDIT4, CALR, HK2, PGK1, SLC7A5, CTSC, ACSL3, SLC1A5, M6PR, TFRC, DDIT3, TMEM97, IFRD1, PLOD2, TUBA4A, PSAT1, CORO1A, LDHA, MTHFD2, FADS2, VLDLR, WARS1, SCD, P4HA1, ACTR2, IDH1, SLC2A1, GBE1, SERPINH1, NUPR1, PSMG1, PSPH, NAMPT, CDKN1A, BHLHE40, HSPA9, HSPA5, EGLN3, LGMN, PNP, XBP1, SLA, DDX39A, HSPE1, ACLY, SLC7A11, SSR1, GLA, SQSTM1, PDK1, PSMC2, PRDX1, SERP1, TRIB3, NFIL3, HMGCS1, GOT1, TPI1, ELOVL6, ASNS, PSMD14, PSMA4, PPA1, HPRT1, AURKA, HMGCR, GAPDH, DHFR, DHCR7, IMMT, UCHL5, YKT6, INSIG1, SQLE, IGFBP5, IFI30, CYP51A1, FGL2, ENO1, IDI1, CYB5B, SHMT2, TXNRD1, G6PD, SLC9A3R1, RAB1A, EBP, PNO1, PIK3R3, ACTR3, LDLR, SLC2A3, UBE2D3, ELOVL5, CACYBP, EDEM1, ATP6V1D, TES, TM7SF2, PSMA3, ITGB2, AK4, SLC1A4, TOMM40, SLC6A6, PPIA, ADD3, ME1, CCNF, SLC37A4, ALDOA, BTG2, UFM1, CCNG1, STC1, NMT1, PSMC6, FDXR, RRM2, DHCR24, PSMC4, CTH, PSME3, CFP, POLR3G, ACACA, QDPR, MCM2, PSMD12, SC5D, CANX, RPN1, HSPA4, NIBAN1, TBK1, SEC11A, BCAT1, PSMB5, PSMD13, PGM1, PLK1, GLRX, COPS5, ETF1, GSK3B, NUP205, SORD, PHGDH, GMPS, RRP9, EEF1E1, LTA4H, SDF2L1, FKBP2, RDH11, CXCR4, MLLT11, GCLC, TCEA1, MAP2K3, HSPD1, SYTL2, MCM4, PPP1R15A, USO1, NFKBIB, UNG, GTF2H1, RPA1, HSP90B1, ERO1A, GSR, PITPNB, EPRS1, SRD5A1, TUBG1, MTHFD2L, ADIPOR2, NUFIP1, CDC25A, PDAP1, STARD4, BUB1, ARPC5L, GPI, EIF2S2, CD9, ATP2A2, GGA2, HMBS, RIT1, SKAP2, STIP1, DAPP1, ABCF2, NFYC, ATP5MC1, PFKL, CCT6A
##
## Gene Set: HALLMARK_E2F_TARGETS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_E2F_TARGETS
## Genes: AURKA, BRCA2, CCP110, CENPE, CKS2, DCLRE1B, DNMT1, DONSON, EED, GINS1, GINS4, H2AZ1, LIG1, MAD2L1, MCM2, MCM4, MCM5, MCM7, MELK, MMS22L, NAA38, NASP, NUDT21, NUP205, ORC6, PCNA, PLK4, POLE, PRIM2, RAD51AP1, RFC2, RPA2, RPA3, SUV39H1, TMPO, UBE2T, WDR90, CDK1, MCM3, TOP2A, MCM6, BIRC5, CCNB2, RRM2, HMGB2, BUB1B, RFC3, EZH2, CHEK1, SMC4, MKI67, CDC20, PLK1, KIF2C, DLGAP5, AURKB, CDC25A, TRIP13, H2AX, HMMR, E2F8, BRCA1, MYBL2, POLD1, RACGAP1, CKS1B, KPNA2, MSH2, CDKN3, ATAD2, RPA1, STMN1, TIPIN, TK1, CDCA8, ESPL1, NCAPD2, RANBP1, MRE11, KIF4A, LMNB1, KIF22, UNG, SMC1A, CCNE1, CDCA3, ASF1B, POLA2, TIMELESS, HELLS, UBE2S, PRKDC, RAN, USP1, SPAG5, POLD3, DUT, TACC3, KIF18B, CDC25B, SRSF1, GINS3, NOLC1, SLBP, CHEK2, SPC25, BARD1, DCTPP1, SMC3, RNASEH2A, DEK, CENPM, RAD51C, CBX5, RFC1, POLD2, DSCC1, ILF3, DEPDC1, DCK, CDKN2C, MYC, TCF19, RAD1, LBR, NBN, PTTG1, UBR7, POLE4, TUBG1, CTCF, CNOT9, TUBB, SMC6, ZW10, PA2G4, SSRP1, NAP1L1, ANP32E, HMGB3, IPO7, RAD21, CDK4, CDKN1A, BRMS1L, CTPS1, RAD50, TRA2B, CSE1L, PAICS, STAG1, LUC7L3, PPM1D, NME1, SRSF2, XPO1, HNRNPD, PMS2, ASF1A, EXOSC8, MLH1, NUP107, ORC2, TP53, TFRC, HMGA1, PSIP1, DDX39A, SNRPB, CDKN1B, MTHFD2, WEE1, PRDX4, PHF5A, TBRG4, SHMT1, PRPS1, DIAPH3, NUP153, PSMC3IP, XRCC6, PNN, HUS1, RBBP7, PDS5B, NOP56, MXD3, PPP1R8, GSPT1, CDKN2A, AK2, CIT, ING3, JPT1, POP7, SYNCRIP, EIF2S1, LYAR, PAN2, SPC24
##
## Gene Set: HALLMARK_MYC_TARGETS_V1
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYC_TARGETS_V1
## Genes: PCNA, PSMD8, PSMD7, SET, SNRPA1, RAN, SRSF2, G3BP1, STARD7, NPM1, BUB3, EIF3D, XPO1, FBL, EIF4A1, CANX, NAP1L1, CBX3, CCT3, C1QBP, U2AF1, UBE2L3, SSBP1, SRSF1, TCP1, MCM2, EIF3B, PSMD14, SNRPA, PWP1, APEX1, TXNL4A, HNRNPR, PSMB2, HPRT1, MCM6, NME1, SNRPD1, EEF1B2, HSPD1, CAD, RPL18, PGK1, DDX18, RPS2, LDHA, RUVBL2, RNPS1, EIF2S1, RANBP1, MCM5, IARS1, UBE2E1, MYC, AP3S1, RFC4, DUT, PSMA4, RPS3, SNRPG, PHB2, SSB, EIF4H, SRSF3, CCT4, TFDP1, EIF2S2, CDK4, SNRPD3, PSMD1, RACK1, GOT2, PABPC4, CCT5, PRPS2, ACP1, PRPF31, CCT2, KARS1, DEK, EIF4G2, XPOT, SRM, UBA2, KPNB1, PSMA7, TRA2B, COX5A, PA2G4, PCBP1, HNRNPA1, CCNA2, PPIA, EIF3J, ORC2, PSMA2, SYNCRIP, HDAC2, LSM2, VBP1, PSMA6, CNBP, CDK2, TARDBP, NOLC1, GSPT1, HNRNPA2B1, ETF1, RPL6, TOMM70, PTGES3, PSMA1, PSMC6, CTPS1, HSPE1, FAM120A, PPM1G, HNRNPD, SERBP1, CSTF2, PRDX4, EIF4E, ODC1, USP1, RPL22, HNRNPA3, NCBP1, RPLP0, ABCE1, EIF1AX, YWHAE, MCM7, YWHAQ, VDAC1, SMARCC1, SNRPD2, HNRNPU, HDDC2, PSMD3, RRM1, SF3A1, LSM7, ERH, RPL14, PSMB3, IFRD1, NCBP2, GLO1, NDUFAB1, CUL1, NHP2, CLNS1A, TRIM28, RSL1D1, HNRNPC, COPS5, XRCC6, SLC25A3, MRPL9, POLE3, POLD2, H2AZ1, AIMP2, NOP56, PRDX3, MRPS18B, EPRS1, KPNA2, HSP90AB1, RPL34, SRPK1, MAD2L1, DHX15, MCM4, RPS5, CCT7, HDGF, RPS6, SNRPB2, PSMC4, CDC20, TUFM, RRP9, CDC45, TYMS, ILF2, VDAC3, IMPDH2, SF3B3, NOP16, SRSF7, GNL3, EXOSC7, MRPL23, RAD23B, RPS10, PHB1, DDX21, CYC1, PABPC1
##
## Gene Set: HALLMARK_MYC_TARGETS_V2
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYC_TARGETS_V2
## Genes: SLC19A1, MRTO4, TMEM97, RRP9, PES1, TFB2M, EXOSC5, IPO4, NDUFAF4, NOC4L, MYC, SRM, PA2G4, GNL3, NOLC1, WDR43, RABEPK, NOP16, TBRG4, DDX18, NIP7, WDR74, BYSL, HSPD1, PLK4, NOP2, PPAN, NOP56, RCL1, NPM1, AIMP2, RRP12, PPRC1, TCOF1, MCM5, HK2, CBX3, PLK1, PHB1, MCM4, CDK4, DUSP2, MYBBP1A, UTP20, PRMT3, FARSA, MAP3K6, LAS1L, PUS1, HSPE1, SLC29A2, DCTPP1, SUPV3L1, SORD, IMP4, GRWD1, UNG, MPHOSPH10
##
## Gene Set: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
## Genes: COL3A1, COL5A2, COL5A1, FBN1, COL1A1, FN1, COL6A3, SERPINE1, COL1A2, COL4A1, COL4A2, VCAN, IGFBP3, TGFBI, SPARC, LUM, LAMC1, LOX, LAMC2, CCN2, TAGLN, COL7A1, LOXL2, COL6A2, ITGAV, THBS2, COL16A1, NNMT, TPM1, CDH2, MMP2, COL11A1, THBS1, FAP, BGN, SERPINH1, FSTL1, POSTN, THY1, SPP1, TNC, TFPI2, NID2, ITGB5, MMP3, VIM, LOXL1, FBLN5, COL12A1, ELN, CDH11, COMP, SPOCK1, BMP1, IL32, LAMA3, TIMP1, QSOX1, TIMP3, VCAM1, CCN1, EDIL3, CALD1, MAGEE1, FBLN1, SGCB, ECM1, LAMA2, FSTL3, TPM2, INHBA, DAB2, EMP3, BASP1, ITGA5, MGP, VEGFA, CXCL1, WNT5A, SDC1, PLOD2, PCOLCE, GREM1, ITGB1, COL5A3, RHOB, HTRA1, FGF2, SNTB1, GADD45A, MEST, LRRC15, TNFRSF11B, CD59, ACTA2, EFEMP2, MATN2, PCOLCE2, SERPINE2, GPC1, ABI3BP, FUCA1, SLIT3, LAMA1, PMEPA1, COL8A2, FBN2, IGFBP2, PFN2, SDC4, CD44, GADD45B, CXCL8, GLIPR1, ANPEP, P3H1, VEGFC, MMP14, SGCD, PLOD1, MATN3, MYL9, SLC6A8, CALU, PRRX1, TNFRSF12A, FMOD, ID2, GEM, PLAUR, MYLK, TGFB1, SFRP1, PLOD3, IL6, APLP1, FBLN2, MSX1, PTX3, FZD8, JUN, FERMT2, DKK1, SNAI2, DST, TPM4, DCN, GJA1, PMP22, IGFBP4, COPA, LRP1, ITGA2, FLNA, MFAP5, PTHLH, TGFBR3, SFRP4, LGALS1, RGS4, CDH6, SAT1, NT5E, DPYSL3, PPIB, TGM2, SGCG, ITGB3, PDLIM4, CTHRC1, ECM2, CRLF1, AREG, IL15, MCM7, GAS1, PRSS2, CADM1, OXTR, SCG2, CXCL6, MMP1, TNFAIP3, CAPG, CAP2, MXRA5, FOXC2, NTM, ENO2, FAS, BDNF, ADAM12, PVR, CXCL12, PDGFRB, SLIT2, NOTCH2, COLGALT1, GPX7, WIPF1
##
## Gene Set: HALLMARK_INFLAMMATORY_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INFLAMMATORY_RESPONSE
## Genes: CXCL10, CCL2, CCL5, FPR1, CCL20, IL1A, CXCL8, CCL7, CCL22, CXCL11, CCR7, EDN1, CD40, CXCL9, IL6, IL1B, TLR2, IL1R1, CD69, ICAM1, CCRL2, AQP9, EREG, C3AR1, GNA15, CMKLR1, PTGER4, LIF, IL15, NAMPT, OPRK1, ITGB8, PTAFR, ADM, PLAUR, NFKB1, INHBA, OSM, TNFSF10, TNFSF15, IFNGR2, ADGRE1, IL12B, CSF1, CXCL6, TNFRSF9, LYN, ACVR2A, LDLR, BDKRB1, HRH1, F3, BST2, PTGIR, CD55, CALCRL, CSF3, GPR132, IL4R, NLRP3, IL15RA, ADORA2B, GCH1, OLR1, PTGER2, CSF3R, MYC, RELA, TNFAIP6, IL7R, IL18, GABBR1, CD82, TNFSF9, NMUR1, IL2RB, TLR1, LPAR1, IRAK2, RIPK2, MMP14, P2RX7, SLC11A2, SELL, P2RY2, ABCA1, FFAR2, PROK2, GNAI3, TACR1, SLC7A1, CDKN1A, CYBB, TIMP1, HBEGF, SCARF1, EBI3, NFKBIA, SRI, SLC7A2, CCL17, TLR3, APLNR, OSMR, IL10RA, PSEN1, GPR183, ATP2B1, TNFRSF1B, BEST1, GPC3, SCN1B, ACVR1B, HPN, SEMA4D, KLF6, CD48, CXCR6, SLC1A2, GP1BA, TAPBP, RGS16, SLAMF1, LCK, HIF1A, AHR, NMI, RHOG, TPBG, NPFFR2, IFNAR1, ICOSLG, RASGRP1, IFITM1, KCNJ2, LY6E, IL18R1, IL10, KCNA3, HAS2, DCBLD2, LAMP3, VIP, CD70, RGS1, SLC31A1, ADRM1, KCNMB2, SERPINE1, MXD1, AXL, MEFV, PVR, CCL24, PDE4B, LCP2, PDPN, IRF7, MET, ATP2A2, SLC31A2, FZD5, ITGA5, SGMS2, MARCO, CD14, EIF2AK2, ROS1, ATP2C1, NDP, BTG2, MSR1, PTPRE, RNF144B, PCDH7, SPHK1, IL18RAP, RTP4, RAF1, CHST2, ITGB3, KIF1B, SELE, NOD2, C5AR1, EMP3, CLEC5A, TACR3, SLC4A4, MEP1A, SELENOS, LTA, PIK3R5, STAB1, IRF1, ICAM4, P2RX4, ABI1, CX3CL1, SLC28A2
##
## Gene Set: HALLMARK_XENOBIOTIC_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_XENOBIOTIC_METABOLISM
## Genes: CYP1A1, FAH, DCXR, CYP1A2, GSTA3, CYP2J2, CYP27A1, ADH1C, UGDH, ASL, NQO1, ALAS1, GSTM4, CYP2C18, PTS, CYB5A, ACOX2, EPHX1, LCAT, SLC35D1, GSS, FMO3, IDH1, AKR1C3, SLC22A1, GSTO1, ARG1, CDO1, FMO1, ALDH9A1, POR, NDRG2, UPB1, ECH1, PTGES, PDK4, AHCY, COMT, AOX1, CFB, DDAH2, HGFAC, F11, CYP26A1, MCCC2, SERPINA6, GNMT, BLVRB, HACL1, MAOA, KYNU, DHPS, SERPINE1, SLC6A12, GCH1, DHRS7, PAPSS2, ALDH2, HSD11B1, SLC35B1, KARS1, CA2, LPIN2, CAT, CYP2S1, RAP1GAP, FBP1, RBP4, GCKR, CDA, MTHFD1, ADH7, DHRS1, VNN1, CNDP2, SLC6A6, FETUB, CROT, GAD1, AKR1C2, TKFC, IGF1, SSR3, GABARAPL1, TMBIM6, CD36, CES1, SHMT2, TMEM176B, GSTT2, PLG, HMOX1, SPINT2, ALDH3A1, GSR, ABHD6, XDH, PPARD, ELOVL5, CYP4F2, RETSAT, CYFIP2, PINK1, GCLC, ESR1, PMM1, TDO2, MT2A, ATP2A2, DDT, FABP1, ACP2, ABCD2, G6PC1, DDC, ACOX3, SAR1B, FBLN1, ADH5, CRP, ABCC2, ETS2, NPC1, CASP6, BPHL, IL1R1, ENTPD5, TNFRSF1A, IGFBP4, PYCR1, CSAD, VTN, ID2, ETFDH, HRG, TYR, UPP1, BCAR1, CBR1, APOE, SLC12A4, TMEM97, SLC46A3, PTGDS, MPP2, PTGR1, AQP9, EPHA2, PSMB10, FAS, ACOX1, GART, HPRT1, PGD, ABCC3, SMOX, TTPA, HES6, GCNT2, MAN1A1, IGFBP1, ITIH4, PROS1, TPST1, LEAP2, NFS1, PGRMC1, CYP17A1, ARPP19, SERTAD1, ARG2, HNF4A, REG1A, CCL25, PEMT, ACO2, LONP1, NMT1, PTGES3, F10, TAT, MARCHF6, JUP, ACP1, MBL2, TGFB2, ENPEP, HSD17B2, ANGPTL3, PC, PDLIM5, CYP2E1, BCAT1, ATOH8, SLC1A5, IRF8, NINJ1, AP4B1, ACSM1, ITIH1
##
## Gene Set: HALLMARK_FATTY_ACID_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_FATTY_ACID_METABOLISM
## Genes: ACAA1, ACAA2, ACADL, ACADM, ACOT8, ACOX1, ACSL1, ALDH3A2, MIX23, CPT2, CYP4A11, DECR1, ECH1, ECI1, ELOVL5, FABP1, FABP2, HADH, HIBCH, HMGCL, HSD17B11, IDH1, ME1, MGLL, MLYCD, PCBD1, RETSAT, S100A10, SUCLG1, VNN1, EHHADH, ALDH9A1, HADHB, ECHS1, ACADS, CA2, HSD17B10, ALDH1A1, ACADVL, HSD17B4, CA4, ADH1C, ADH7, PTS, MAOA, HAO2, HSD17B7, MCEE, ACAT2, AUH, HPGD, FH, HMGCS2, ALAD, GPD1, ACO2, CBR1, GRHPR, ACOT2, G0S2, MDH2, HSP90AA1, BCKDHB, UROS, YWHAH, LDHA, CRYZ, RDH16, INMT, UGDH, GSTZ1, IDH3B, MDH1, CRAT, ETFDH, CD36, ECI2, SDHD, ACSL5, HSDL2, HMGCS1, SDHC, CD1D, GCDH, GPD2, ALDH3A1, SLC22A5, PDHB, TDO2, FASN, NBN, PSME1, PPARA, NCAPH2, BPHL, ODC1, CA6, DLD, HCCS, EPHX1, DLST, FMO1, AOC3, UROD, CPT1A, KMT5A, UBE2L6, MIF, SUCLG2, CPOX, SMS, CBR3, NTHL1, CIDEA, IDI1, AADAT, REEP6, HSPH1, APEX1, NSDHL, ADIPOR2, ACSL4, ACSS1, ENO3, IDH3G, LGALS1, METAP1, ALDOA, ACSM3, LTC4S, D2HGDH, ADSL, SUCLA2, SDHA, XIST, OSTC, GLUL, CYP4A22, GABARAPL1, AQP7, CYP1A1, PRDX6, ERP29, H2AZ1, GAPDHS, DHCR24, GAD2, PTPRG, IL4I1, TP53INP2, PDHA1, RAP1GDS1, CEL, BLVRA, SERINC1, BMPR1B, RDH11, ENO2
##
## Gene Set: HALLMARK_OXIDATIVE_PHOSPHORYLATION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_OXIDATIVE_PHOSPHORYLATION
## Genes: NDUFS3, UQCRB, NDUFS2, SDHA, UQCRC1, NDUFA9, NDUFS4, NDUFS1, NDUFA2, NDUFS8, SDHB, NNT, ATP5PO, ATP5MC3, NDUFS7, ATP5F1A, NDUFV1, COX5B, UQCRH, NDUFA1, ATP5F1C, ATP5F1B, COX7B, SDHD, CYCS, NDUFA6, NDUFAB1, COX8A, ACO2, ATP5MC1, CYC1, NDUFB6, ATP5F1E, COX5A, UQCRC2, COX6A1, ATP5F1D, COX6C, ATP5PF, NDUFB3, IDH3B, OGDH, NDUFB8, SURF1, COX6B1, NDUFB5, NDUFA4, NDUFB1, COX4I1, COX7C, UQCRFS1, SDHC, ATP6V1F, COX7A2, SUCLG1, NDUFS6, NDUFA7, FH, NDUFV2, OXA1L, NDUFC1, UQCR11, NDUFA5, CS, ATP6V1G1, ATP5PB, HCCS, HADHB, ATP5PD, PDHA1, NDUFA8, DLD, OPA1, SLC25A11, ATP5ME, PDHB, ATP5MF, NDUFB7, IDH2, MTX2, VDAC3, MDH1, ATP5MC2, IMMT, MDH2, SLC25A3, ATP6V1D, VDAC2, ACADM, COX7A2L, TIMM17A, ATP6V1E1, NDUFA3, SLC25A6, IDH3G, ACADVL, ETFA, TIMM9, IDH3A, TIMM8B, ATP6AP1, TIMM13, UQCRQ, ABCB7, VDAC1, ATP5MG, PHB2, DECR1, SUCLA2, GOT2, DLAT, ATP6V1H, NDUFB2, FDX1, HADHA, ATP6V1C1, MAOB, NDUFB4, UQCR10, ETFDH, GPX4, PDHX, MFN2, AIFM1, ACAA2, ETFB, COX11, ECHS1, PMPCA, ATP6V0B, SLC25A5, DLST, COX15, CYB5A, ALAS1, SLC25A4, CPT1A, SLC25A20, MTRR, COX17, CYB5R3, TOMM22, ACAT1, MRPS11, ATP6V0C, PDK4, TIMM10, LDHA, ECI1, MRPL11, FXN, MRPS12, COX10, RHOT1, ACAA1, ACADSB, LDHB, MRPS30, ATP1B1, BDH2, SLC25A12, TIMM50, MRPL34, ISCA1, MRPL35, IDH1, HSPA9, MRPL15, MRPS15, TOMM70, TCIRG1, ISCU, POLR2F, NQO2, NDUFC2, MRPS22, POR, ATP6V0E1, PHYH, MPC1, GPI, AFG3L2, HSD17B10, CASP7, PRDX3, MGST3, HTRA2, BCKDHA, LRPPRC, RETSAT, ECH1, RHOT2, BAX, MTRF1, GLUD1, SUPV3L1, GRPEL1, PDP1, ALDH6A1, OAT
##
## Gene Set: HALLMARK_GLYCOLYSIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_GLYCOLYSIS
## Genes: PGK1, ALDOA, ENO1, TPI1, PFKP, ERO1A, ALDOB, VEGFA, MXI1, PKM, HK2, LDHA, EXT1, SLC25A10, GUSB, PFKFB1, PGAM1, PYGB, AK4, P4HA1, PMM2, FAM162A, SDC1, EGLN3, PC, B4GALT7, FBP2, IGFBP3, CHPF, B3GAT3, CHST12, HS2ST1, MPI, GNPDA1, AKR1A1, PPFIA4, B3GAT1, CHPF2, G6PD, MDH2, CHST6, PGLS, PGAM2, CHST1, GPC1, GFUS, ALG1, GFPT1, PRPS1, GOT1, MDH1, SLC35A3, GALK1, EGFR, ANGPTL4, CITED2, PLOD2, QSOX1, ME2, SPAG4, P4HA2, GAPDHS, ENO2, GOT2, EXT2, SLC25A13, HMMR, PDK3, CXCR4, GPC4, ECD, GNE, B4GALT2, FUT8, MIOX, VCAN, GPC3, B3GALT6, HSPA5, ME1, ADORA2B, UGP2, MIF, NANP, ZNF292, STC2, TPST1, PGM2, GYS1, TKTL1, TGFA, CHST2, PHKA2, STMN1, GALE, MET, LCT, IRS2, POLR3K, B4GALT1, EFNA3, LHX9, KDELR3, TALDO1, DPYSL4, VLDLR, CD44, AGL, SOX9, DDIT4, IDUA, CASP6, GLCE, COPB2, DSC2, HS6ST2, CDK1, PLOD1, SDC2, GMPPB, PAXIP1, NSDHL, RARS1, SLC16A3, GLRX, SRD5A3, SDC3, HDLBP, COL5A1, CLDN9, TFF3, STC1, KIF20A, GYS2, SLC37A4, LHPP, SDHC, NASP, AURKA, B3GNT3, ISG20, LDHC, ARPP19, CENPA, HOMER1, BIK, CYB5A, HAX1, COG2, IL13RA1, NOL3, CLDN3, AGRN, CLN6, TXN, PAM, CAPN5, PKP2, ABCB6, DCN, GMPPA, BPNT1, ANG, GPR87, GAL3ST1, ALDH7A1, NT5E, IDH1, PYGL, NDUFV3, NDST3, PPP2CB, PSMC4, TPBG, TGFBI, GALK2, CTH, KIF2A, CACNA1H, ANKZF1, SAP30, RBCK1, ELF3, RPE, B4GALT4, DEPDC1, RRAGD, IER3, ALDH9A1, DLD, MERTK, GCLC, FKBP4, SOD1, MED24, AK3, XYLT2, ARTN, PPIA, CHST4
##
## Gene Set: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
## Genes: GSR, PRDX2, TXNRD1, SOD1, GCLC, CAT, GPX4, MPO, PRDX1, PRDX6, GCLM, TXN, SOD2, PRDX4, SELENOS, PDLIM1, TXNRD2, LAMTOR5, G6PD, MSRA, MBP, SRXN1, NQO1, OXSR1, GLRX2, HMOX2, FES, PFKP, NDUFB4, GPX3, SCAF4, CDKN2D, MGST1, ABCC1, FTL, ATOX1, STK25, EGLN2, ERCC2, SBNO2, JUNB, PTPA, LSP1, NDUFA6, HHEX, GLRX, NDUFS2, PRNP, IPCEF1
##
## Gene Set: HALLMARK_P53_PATHWAY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_P53_PATHWAY
## Genes: CDKN1A, BTG2, MDM2, CCNG1, FAS, TOB1, GADD45A, PHLDA3, TAP1, CDKN2B, SFN, ZMAT3, DDB2, EI24, PERP, DDIT4, ATF3, BAX, SESN1, FDXR, PIDD1, SAT1, CDKN2A, AEN, PPM1D, FOXO3, BTG1, TXNIP, SLC19A2, IER3, TP53, NOTCH1, RRAD, DCXR, NINJ1, FOS, S100A10, FBXW7, PLK3, XPC, AK1, TRIAP1, BAK1, CCND2, APAF1, PDGFA, NDRG1, RALGDS, SERPINB5, DGKA, CYFIP2, KLF4, IP6K2, ADA, TNFSF9, KLK8, PRKAB1, STOM, SOCS1, PLK2, CASP1, RCHY1, PCNA, RPS27L, RB1, PPP1R15A, POLH, RAB40C, ERCC5, CDH13, DDIT3, TGFB1, FUCA1, H2AC25, TP63, HSPA4L, EPHX1, ABHD4, H2AJ, TRAF4, CTSF, IER5, TAX1BP3, TSC22D1, RGS16, HRAS, PVT1, ZFP36L1, SDC1, WRAP73, RAP2B, COQ8A, PLXNB2, HEXIM1, PROCR, SPHK1, NOL8, DEF6, SP1, JAG2, CCP110, DRAM1, RPL18, CEBPA, KIF13B, MXD1, TRAFD1, OSGIN1, ANKRA2, HBEGF, RAD51C, ITGB4, TRIB3, INHBB, VAMP8, VWA5A, ABAT, CTSD, PTPRE, HINT1, ALOX15B, VDR, ELP1, WWP1, NUPR1, TCN2, CDKN2AIP, POM121, ZNF365, EPHA2, JUN, MAPKAPK3, SLC7A11, SERTAD3, IRAK1, ABCC5, UPP1, CD81, LIF, RPL36, FAM162A, RNF19B, CDK5R1, STEAP3, PITPNC1, SLC35D1, TPRKB, RRP8, IL1A, PMM1, TPD52L1, IFI30, GM2A, RPS12, EPS8L2, TM4SF1, BLCAP, MKNK2, CD82, RACK1, ST14, TCHH, HDAC3, CCNK, RHBDF2, NUDT15, TGFA, ISCU, LDHB, TNNI1, FGF13, RXRA, APP, F2R, CLCA2, CGRRF1, CSRNP2, ACVR1B, BMP2, GPX2, KRT17, TM7SF3, ZBTB16, PTPN14, TSPYL2, SLC3A2, S100A4, GLS2, CCND3, PRMT2, NHLH2, BAIAP2, RETSAT, IRAG2, H1-2, DNTTIP2, MXD4, SEC61A1, HMOX1, RAD9A
##
## Gene Set: HALLMARK_UV_RESPONSE_UP
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UV_RESPONSE_UP
## Genes: NXF1, SLC6A8, BAK1, CDC5L, HSPA2, POLR2H, ALAS1, TUBA4A, C4BPB, CCNE1, EPHX1, GRPEL1, ICAM1, FEN1, ARRB2, JUNB, CTSV, DGAT1, ATF3, CASP3, RASGRP1, TMBIM6, FOS, TAP1, E2F5, RAB27A, CCND3, SLC25A4, SPR, CDKN2B, SHOX2, OLFM1, IGFBP2, LYN, CLTB, BCL2L11, LHX2, NFKBIA, MSX1, H2AX, NR4A1, GLS, CDC34, MMP14, STK25, PDAP1, ABCB1, BSG, SELENOW, IRF1, RXRB, TFRC, PPIF, CDKN1C, HLA-F, CREG1, APOM, BMP2, TGFBRAP1, NAT1, CYB5R1, RRAD, POLE3, IL6, YKT6, ACAA1, CLCN2, AGO2, SOD2, PPP1R2, RHOB, RET, PDLIM3, EPCAM, DNAJA1, SULT1A1, CHKA, CYP1A1, ATP6V1F, CDO1, ALDOA, NPTXR, EIF2S3, CNP, GRINA, BID, POLG2, IL6ST, HYAL2, FOSB, MGAT1, NKX2-5, PPAT, FURIN, MRPL23, HTR7, CXCL2, KLHDC3, PRPF3, DNAJB1, AP2S1, PSMC3, TST, SIGMAR1, GCH1, BTG2, CEBPG, TARS1, UROD, PARP2, BTG3, DLG4, CHRNA5, NPTX2, ATP6V1C1, AQP3, PLCL1, NUP58, TYRO3, HMOX1, RPN1, BTG1, FMO1, ASNS, DDX21, KCNH2, COL2A1, MAOA, TCHH, CYB5B, HSPA13, GGH, GAL, NTRK3, PPT1, FGF18, FKBP4, STIP1, EIF5, ENO2, GPX3, PRKACA, PRKCD, STARD3, MARK2, SLC6A12, SQSTM1, PTPRD, MAPK8IP2, CDK2, ONECUT1, RFC4, CA2, TACR3, AMD1, HNRNPU, WIZ, CCK
##
## Gene Set: HALLMARK_UV_RESPONSE_DN
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UV_RESPONSE_DN
## Genes: TJP1, NFIB, TGFBR3, TFPI, MMP16, ABCC1, MAP2K5, AGGF1, PLCB4, MET, IRS1, PTPRM, AKT3, SIPA1L1, NR1D2, ATRN, ANXA2, ADD3, CDKN1B, ATXN1, CAP2, PRDM2, TOGARAM1, SDC2, SMAD3, SLC7A1, GCNT1, RUNX1, RND3, PLPP3, NR3C1, YTHDC1, PPARG, ADGRL2, DLG1, ATP2B4, NIPBL, PEX14, MYC, RASA2, FZD2, BMPR1A, LPAR1, PRKCA, MGMT, PRKCE, RXRA, LTBP1, LDLR, RBPMS, CACNA1A, RGS4, COL5A2, PTPN21, PRKAR2B, GJA1, BCKDHB, DMAC2L, SERPINE1, AMPH, MIOS, CITED2, COL1A2, INSIG1, FYN, WDR37, ZMIZ1, PMP22, CDON, PIK3R3, NOTCH2, SYNJ2, SMAD7, MAP1B, TENT4A, PTEN, DYRK1A, NEK7, SPOP, F3, ERBB2, GRK5, DUSP1, VLDLR, CAV1, COL11A1, CDC42BPA, CDK13, SFMBT1, ADORA2B, BHLHE40, COL3A1, KCNMA1, SYNE1, IGF1R, CELF2, MTA1, EFEMP1, LAMC1, PHF3, SCAF8, VAV2, PIAS3, ACVR2A, NRP1, MRPS31, CCN1, DAB2, MAGI2, ANXA4, COL1A1, SCHIP1, DDAH1, PDGFRB, ATRX, KALRN, TGFBR2, PTGFR, ATP2C1, ARHGEF9, NFKB1, MGLL, FBLN5, PDLIM5, MAPK14, SRI, INPP4B, IGFBP5, ITGB3, BDNF, ID1, SNAI2, SCN8A, ATP2B1, FHL2, KIT, APBB2, PIK3CD, DLC1, MT1E, DBP, HAS2, SLC22A18, ICA1
##
## Gene Set: HALLMARK_ANGIOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ANGIOGENESIS
## Genes: VCAN, POSTN, FSTL1, LRPAP1, STC1, LPL, VEGFA, PF4, THBD, FGFR1, TNFRSF21, CCND2, COL5A2, ITGAV, SERPINA5, KCNJ8, APP, JAG1, COL3A1, SPP1, NRP1, OLR1, PDGFA, PTK2, SLCO2A1, PGLYRP1, VAV2, S100A4, MSX1, VTN, TIMP1, APOH, PRG2, JAG2, LUM, CXCL6
##
## Gene Set: HALLMARK_HEME_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HEME_METABOLISM
## Genes: ALAS2, PPOX, FECH, HMBS, GYPB, ALAD, RHD, GYPA, SELENBP1, BLVRB, GYPE, GYPC, EPB42, SLC4A1, RHCE, RHAG, TAL1, MARCHF8, SPTB, UROD, HBQ1, DCAF11, ERMAP, EIF2AK1, CPOX, MPP1, GLRX5, TSPAN5, OSBP2, ANK1, NFE2, AHSP, SPTA1, MAP2K3, BNIP3L, SLC22A4, CLIC2, TRAK2, GCLC, KEL, RANBP10, TRIM10, TSPO2, UROS, XK, SNCA, MARK3, UBAC1, CA1, CA2, BSG, FOXO3, KLF1, CDC27, KAT2B, NARF, GCLM, FBXO7, H1-0, HEBP1, HBD, NUDT4, FBXO9, RAD23A, CROCCP2, TMCC2, BLVRA, GATA1, RBM38, PRDX2, RNF123, MINPP1, TNS1, CTSE, DMTN, HDGF, XPO7, MKRN1, SMOX, TFDP2, MXI1, HBB, MOSPD1, SLC25A37, SLC30A1, ABCB6, SLC6A8, TFRC, RCL1, TOP1, EPOR, TNRC6B, ACSL6, GAPVD1, MGST3, SLC30A10, CAT, BCAM, HBZ, ACKR1, PSMD9, ISCA1, PDZK1IP1, H4C3, ICAM4, MOCOS, ADD1, FTCD, ADD2, BMP2K, BPGM, CLCN3, E2F2, HAGH, KDM7A, OPTN, RAP1GAP, CTNS, NFE2L1, ELL2, SLC2A1, PIGQ, KLF3, EPB41, LAMP2, TMEM9B, EZH1, CTSB, ATG4A, MFHAS1, MYL4, RNF19A, BTG2, SLC11A2, ADIPOR1, ASNS, DCUN1D1, ALDH1L1, DCAF10, YPEL5, SEC14L1, USP15, RIOK3, SIDT2, FOXJ2, TCEA1, VEZF1, LPIN2, PC, HBBP1, CDR2, CCND3, SLC25A38, TENT5C, FBXO34, BACH1, NR3C1, AQP3, TRIM58, LMO2, PICALM, NCOA4, GDE1, SLC6A9, NNT, ARHGEF12, PPP2R5B, C3, MARCHF2, UCP2, SYNJ1, FN3K, ABCG2, DAAM1, AGPAT4, CCDC28A, GMPS, ACP5, SLC10A3, ALDH6A1, CIR1, RBM5, HTRA2, IGSF3, BTRC, PGLS, SLC66A2, SDCBP, LRP10, NEK7, ARL2BP, ENDOD1, P4HA2, HTATIP2, SLC7A11, KHNYN, MBOAT2, ATP6V0A1, CAST, TYR
##
## Gene Set: HALLMARK_COAGULATION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_COAGULATION
## Genes: F2, PROC, C1S, MMP14, F10, PLG, C1R, SERPINE1, SERPING1, C2, F12, CFI, MMP2, C3, F9, CTSO, TMPRSS6, MMP9, PROZ, MMP1, CFB, BMP1, VWF, FGA, F11, THBD, FURIN, MMP11, F8, LGMN, HPN, CTSB, MBL2, F13B, TIMP1, CTSV, MMP8, A2M, MMP10, MASP2, FGG, C8A, PLAU, ADAM9, GSN, CAPN2, PLAT, FN1, CTSH, OLR1, SPARC, RGN, C8B, LAMP2, C9, PROS1, CLU, F2RL2, CD9, CFH, PREP, LTA4H, GP9, DUSP14, CTSK, GDA, CASP9, APOC1, CRIP2, KLK8, SERPINC1, ANXA1, ITIH1, PRSS23, FBN1, MST1, F3, KLF7, CTSE, ITGB3, CAPN5, CSRP1, KLKB1, MSRB2, TFPI2, MMP3, MEP1A, GP1BA, APOA1, SERPINA1, TF, PEF1, GNG12, SIRT2, COMP, HTRA1, MAFF, LRP1, PF4, CPQ, MMP15, RABIF, HRG, C8G, APOC2, SERPINB2, RAPGEF3, CPN1, ITGA2, RAC1, DPP4, WDR1, THBS1, FYN, PDGFB, SH2B2, PECAM1, MMP7, DUSP6, CPB2, S100A13, CFD, DCT, LEFTY2, ANG, C1QA, HMGCS2, ISCU, PLEK, APOC3, P2RY1, USP11, TIMP3, ACOX2, HNF4A, S100A1, GNB2, ARF4
##
## Gene Set: HALLMARK_IL2_STAT5_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_IL2_STAT5_SIGNALING
## Genes: SOCS2, CISH, PIM1, IL2RA, TNFRSF4, SOCS1, TNFRSF9, XBP1, RRAGD, HK2, PHLDA1, IL2RB, CTLA4, NFIL3, CD83, IKZF2, IL10, TNFRSF18, DHRS3, ECM1, ADAM19, SLC2A3, HIPK2, BATF3, BHLHE40, PTGER2, DENND5A, ITIH5, PHTF2, GADD45B, NRP1, NCOA3, CD79B, AHR, TNFRSF1B, NDRG1, BCL2L1, GABARAPL1, LIF, TIAM1, BMPR2, MAP3K8, RHOB, MYC, S100A1, ETFBKMT, CAPG, ST3GAL4, PENK, IRF4, CST7, WLS, TLR7, IKZF4, GBP4, RGS16, SPP1, IL13, SLC29A2, NFKBIZ, IL4R, MXD1, CSF2, FAH, CTSZ, ITGAE, MUC1, MAPKAPK2, TNFRSF21, NT5E, FLT3LG, CCND2, TRAF1, LCLAT1, IL3RA, CYFIP1, BCL2, FGL2, PRNP, EEF1AKMT1, PUS1, ITGAV, NCS1, DCPS, AMACR, HYCC2, PTH1R, ODC1, IGF1R, PTCH1, ENO3, CD81, MAFF, EMP1, CDKN1C, CAPN3, IL1R2, SYT11, TTC39B, ANXA4, BATF, P4HA1, GPR65, SLC1A5, IGF2R, CKAP4, CCR4, CD44, P2RX4, GATA1, KLF6, ARL4A, HOPX, GPR83, ITGA6, CD48, DRC1, SELP, GLIPR2, SMPDL3A, PLSCR1, FURIN, SERPINB6, TNFSF11, GPX4, LRRC8C, CCNE1, CASP3, SH3BGRL2, SNX9, PLEC, BMP2, ICOS, ALCAM, LTB, ENPP1, IL1RL1, MYO1C, IFNGR1, PLIN2, IL18R1, AHNAK, PRKCH, TNFRSF8, SYNGR2, GALM, POU2F1, EOMES, NOP2, PTRH2, RHOH, CDC6, MYO1E, CXCL10, SNX14, IRF6, IL10RA, MAP6, TNFSF10, SPRED2, SELL, SERPINC1, CDCP1, RORA, COCH, CSF1, F2RL2, UCK2, CA2, IFITM3, UMPS, HUWE1, COL6A1, ABCB1, RNH1, IRF8, GUCY1B1, AHCY, PRAF2, GSTO1, TWSG1, CDC42SE2, PLAGL1, APLP1, PLPP1, SPRY4, SCN9A, SHE, PDCD2L, CCND3, LRIG1, SWAP70, SLC39A8, RABGAP1L, TGM2, PNP, AGER, ETV4, CD86
##
## Gene Set: HALLMARK_BILE_ACID_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_BILE_ACID_METABOLISM
## Genes: SCP2, ABCD3, SLC27A2, HSD3B7, HSD17B4, AKR1D1, ABCD2, PEX1, CYP8B1, PNPLA8, PHYH, SLC27A5, CYP7B1, CYP27A1, PEX26, AGXT, PEX7, CROT, CYP39A1, ABCA3, CYP7A1, HACL1, PIPOX, PEX6, SOD1, GNPAT, HSD3B1, ABCA2, HAO1, PEX16, ABCD1, ACSL1, MLYCD, ABCG8, AQP9, ISOC1, NR1H4, PEX19, NPC1, HSD17B11, AMACR, CYP46A1, PEX13, IDH1, PEX11A, HSD17B6, EPHX2, PRDX5, PXMP2, BBOX1, FADS2, ALDH9A1, APOA1, OPTN, GSTK1, ABCG4, ALDH8A1, NR3C2, ABCA6, RETSAT, FADS1, PECR, PEX12, CAT, GNMT, ABCA9, ACSL5, LONP2, DHCR24, ABCA8, PFKM, DIO1, RXRA, FDXR, TTR, KLF1, SLC29A1, BCAR3, LCK, PEX11G, SLCO1A2, ALDH1A1, SULT1B1, NR1I2, GC, ABCA4, SLC35B2, SLC23A1, NUDT12, ABCA1, PAOX, SLC22A18, DIO2, RBP1, SLC23A2, ATXN1, GCLM, NEDD4, RXRG, AR, BMP6, SERPINA6, LIPE, EFHC1, IDH2, IDI1, CH25H, ABCA5, SULT2B1, SOAT2, TFCP2L1, NR0B2
##
## Gene Set: HALLMARK_PEROXISOME
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PEROXISOME
## Genes: ABCD3, ACOT8, ACOX1, ACSL1, ECH1, ECI2, EHHADH, GSTK1, HSD17B4, MLYCD, PEX11A, RETSAT, SLC27A2, PEX13, PEX14, SCP2, HSD3B7, GNPAT, ABCD2, SLC25A17, PEX2, ACAA1, HAO2, HSD17B11, CRAT, PEX11B, LONP2, IDH1, FIS1, PEX6, ABCB4, SOD1, ABCB1, ISOC1, YWHAH, EPHX2, ABCD1, HMGCL, ACSL5, ALDH9A1, DHCR24, ELOVL5, NUDT19, PRDX5, CTPS1, IDE, SLC23A2, PEX5, BCL10, NR1I2, TSPO, CNBP, MSH2, DHRS3, DIO1, SLC25A4, PRDX1, IDI1, HRAS, MVP, ABCC8, CLN6, CAT, ACSL4, IDH2, ABCC5, SOD2, SLC35B2, FDPS, ALB, FADS1, STS, SMARCC1, ITGB1BP1, SIAH1, SLC25A19, CDK7, RXRG, ALDH1A1, UGT2B17, CADM1, SERPINA6, CLN8, RDH11, CTBP1, HSD11B2, TTR, ERCC3, ATXN1, SULT2B1, CRABP2, CRABP1, TOP2A, SCGB1A1, ERCC1, DLG4, PABPC1, FABP6, ABCB9, CACNA1B, SEMA3C, VPS4B, CEL, ESR2
##
## Gene Set: HALLMARK_ALLOGRAFT_REJECTION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ALLOGRAFT_REJECTION
## Genes: PTPRC, IL12B, TGFB1, IL12A, CD3E, CD3D, CD28, LYN, HCLS1, IL18, CRTAM, IFNG, CD3G, CD86, IL10, UBE2N, BCL10, CD4, LCK, NCK1, C2, HLA-A, ITGB2, HLA-DQA1, CD1D, CD80, HLA-DRA, THY1, TLR1, HLA-G, HLA-DMB, IL7, IL4, TNF, CD247, IL2, HLA-DMA, STAT1, IRF4, SRGN, INHBA, TLR3, ZAP70, CD74, CD40, TRAF2, B2M, BCL3, LTB, IFNGR1, CCR5, CD40LG, HLA-DOA, GLMN, IL6, HLA-E, CD2, CCL5, FAS, FASLG, TLR6, PF4, TGFB2, CD79A, INHBB, ELANE, SPI1, MAP3K7, IL15, CTSS, CD47, PRF1, IL12RB1, LCP2, SOCS1, CDKN2A, STAT4, CD7, HLA-DOB, CD8A, ICAM1, CCL4, GZMB, CSF1, IL11, STAB1, IL2RA, NLRP3, CCND3, EIF3A, SIT1, IFNAR2, HDAC9, CARTPT, TRAT1, CCL22, APBB1, FYB1, IL1B, TIMP1, RPS19, JAK2, KRT1, WARS1, IFNGR2, CCR2, EREG, MMP9, EGFR, IL16, CFP, WAS, ITGAL, KLRD1, RARS1, TLR2, CCND2, IL2RG, ETS1, ITK, NCR1, MAP4K1, CCL19, PSMB10, RPL39, EIF3J, ABCE1, CD8B, F2, ELF4, LY86, FCGR2B, GBP2, PRKCG, RPS9, MTIF2, GZMA, AARS1, CD96, CSK, HIF1A, CCL2, ICOSLG, NPM1, IL4R, CCL11, NME1, FLNA, GPR65, ACHE, EIF3D, IGSF6, F2R, IL13, TAP1, DARS1, IRF7, ACVR2A, CXCR3, PRKCB, CXCL9, PTPN6, NCF4, UBE2D1, LIF, CCR1, MBL2, DEGS1, TPD52, AKT1, RIPK2, IKBKB, GCNT1, SOCS5, IRF8, TAP2, EIF4G3, ABI1, CCL7, IL2RB, BRCA1, FGR, IL18RAP, MRPL3, CXCL13, CAPG, EIF5A, RPS3A, GALNT1, ST8SIA4, CCL13, RPL3L, LY75, TAPBP, NOS2, RPL9, BCAT1, IL9, IL27RA, DYRK3
##
## Gene Set: HALLMARK_SPERMATOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_SPERMATOGENESIS
## Genes: PDHA2, TSSK2, TNP1, ZPBP, DPEP3, ADAM2, ACTL7B, GAPDHS, TUBA3C, LDHC, DDX25, PRM2, TCP11, PIAS2, PAPOLB, OAZ3, PHF7, ODF1, ACRBP, YBX2, CSNK2A2, NAA11, TULP2, ADAD1, SYCP1, DDX4, MLF1, TEKT2, SPATA6, PGK2, HSPA2, ACRV1, CLPB, CRISP2, ZC2HC1C, AKAP4, CCNA1, CCT6B, PACRG, GSG1, THEG, HSPA4L, CST8, DCC, HSPA1L, GSTM3, DNAJB8, IL13RA2, CAMK4, LPIN1, ZC3H14, COIL, PHKG2, KIF2C, RPL39L, SLC2A5, PCSK4, AURKA, MLLT10, NOS1, ART3, CCNB2, NPHP1, CLGN, MAST2, MTOR, CDKN3, ZNRF4, AGFG1, SNAP91, PSMG1, CHFR, TNP2, EZH2, HBZ, ARL4A, SLC12A2, BRAF, VDAC3, POMC, IFT88, TKTL1, NEK2, STAM2, H1-6, GMCL1, MTNR1A, RFC4, DBF4, PRKAR2A, TTK, DMC1, NCAPH, PEBP1, CHRM4, TOPBP1, SCG5, NEFH, MAP7, BUB1, SEPTIN4, PGS1, NPY5R, TSN, CDK1, SHE, PARP2, TNNI3, PCSK1N, IDE, GPR182, RAD17, TLE4, ACE, SIRT1, HTR5A, TALDO1, NF2, CLVS1, CNIH2, GRM8, STRBP, ADCYAP1, ALOX15, MEP1B, SCG3, GFI1, ELOVL3, IL12RB2, DMRT1, GAD1, CFTR, JAM3, IP6K1, HOXB1
##
## Gene Set: HALLMARK_KRAS_SIGNALING_UP
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_KRAS_SIGNALING_UP
## Genes: ANGPTL4, ITGA2, SPRY2, HBEGF, RBP4, HSD11B1, ETV4, GLRX, DUSP6, SCG5, ETV5, ITGB2, AKT2, PPBP, G0S2, GABRA3, IRF8, BIRC3, FGF9, DCBLD2, INHBA, TFPI, TSPAN1, ADAM8, SLPI, PRKG2, MMP11, MMP10, TMEM158, TNFAIP3, PRDM1, GALNT3, ETS1, MMP9, WNT7A, IGFBP3, SPP1, ETV1, CLEC4A, CCND2, TSPAN7, ITGBL1, EMP1, CDADC1, KIF5C, TRIB2, SDCCAG8, PCP4, CFHR2, ALDH1A2, NR0B2, ALDH1A3, AMMECR1, SATB1, GUCY1A1, CSF2, APOD, TOR1AIP2, CMKLR1, TMEM176B, ADGRA2, LAPTM5, CD37, CAB39L, CIDEA, ZNF639, IL1B, GYPC, LY96, FLT4, SPON1, BMP2, PLEK2, IGF2, NR1H4, SNAP25, ACE, PRRX1, C3AR1, TRAF1, TLR8, ID2, TMEM100, PLAUR, GADD45G, CBX8, SCN1B, PTBP2, NAP1L2, AKAP12, PLAT, SCG3, ANO1, IL1RL2, CXCL10, ATG10, YRDC, HDAC9, PEG3, SEMA3B, TNNT2, LIF, CFB, BTC, PPP1R15A, PTPRR, CCL20, ARG1, RETN, KLF4, MMD, PDCD1LG2, H2BC3, HOXD11, TRIB1, F2RL1, ANXA10, TSPAN13, MTMR10, CFH, LAT2, ERO1A, RELN, KCNN4, TMEM176A, MAP4K1, PTGS2, IL33, MAFB, LCP1, NGF, CA2, SERPINA3, RGS16, CTSS, USP12, CPE, SPARCL1, ABCB1, USH1C, CSF2RA, BTBD3, IL2RG, DNMBP, IL10RA, EREG, PRELID3B, EPHB2, FBXO4, CROT, MPZL2, ANKH, CBR4, DOCK2, GPRC5B, RABGAP1L, MALL, STRN, ST6GAL1, PIGR, VWA5A, PSMB8, F13A1, NRP1, SOX9, JUP, ADGRL4, ZNF277, EPB41L3, PCSK1N, FUCA1, PLVAP, ADAM17, AVL9, ADAMDEC1, HKDC1, MAP7, IL7R, RBM4, BPGM, ENG, GFPT2, PLAU, GNG11, PTCD2, MAP3K1, CBL, CXCR4, NIN, IKZF1, WDR33, MYCN, FCER1G, PECAM1, CCSER2, SNAP91, EVI5, TNFRSF1B, GPNMB, TPH1
##
## Gene Set: HALLMARK_KRAS_SIGNALING_DN
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_KRAS_SIGNALING_DN
## Genes: CDH16, SPTBN2, FGFR3, NOS1, PDE6B, SIDT1, NTF3, SCN10A, TAS2R4, DTNB, HTR1D, MAST3, SLC6A3, CLDN8, TGM1, PCDHB1, THRB, YPEL1, RYR2, GDNF, CAMK1D, AMBN, LFNG, SERPINA10, ALOX12B, CALCB, FGGY, SPRR3, ATP6V1B1, EDN1, UPK3B, GAMT, PRODH, RYR1, GPR19, SLC29A3, EDN2, GPRC5C, C5, ZC2HC1C, EDAR, KCNMB1, TENT5C, STAG3, KRT4, SLC25A23, INSL5, GP1BA, KMT2D, ABCG4, MYH7, BRDT, PTGFR, KCNN1, SELENOP, IFI44L, PROP1, LGALS7, BMPR1B, PDK2, DCC, SNCB, COL2A1, UGT2B17, NPY4R, DLK2, WNT16, SLC6A14, ITGB1BP2, SLC12A3, YBX2, CKM, CPB1, MAGIX, ARHGDIG, CALML5, KRT1, MTHFR, ABCB11, MYOT, CELSR2, KLK7, THNSL2, CHRNG, NR4A2, CD40LG, KRT13, GP2, CD207, CCR8, ZBTB16, PRKN, CPA2, MEFV, CCNA1, SLC38A3, KLK8, CYP39A1, KCNQ2, SLC30A3, CHST2, ITIH3, EGF, MSH5, TEX15, CLPS, ENTPD7, CLSTN3, CYP11B2, CLDN16, HSD11B2, COQ8A, HNF1A, FGF22, TFCP2L1, OXT, KCND1, MACROH2A2, NRIP2, RGS11, CPEB3, TG, PTPRJ, NUDT11, FSHB, IDUA, TNNI3, GTF3C5, TFF2, SSTR4, COPZ2, PDCD1, SLC16A7, KCNE2, MFSD6, KLHDC8A, CNTFR, IL5, NPHS1, SCGB1A1, CCDC106, PAX3, VPREB1, TSHB, CACNA1F, AKR1B10, P2RX6, KRT15, PAX4, BTG2, GPR3, GRID2, TCL1A, PLAG1, PKP1, IRS4, IL12B, EPHA5, SOX10, SNN, CACNG1, SPHK2, IGFBP2, CAPN9, TCF7L1, TGFB2, SMPX, LYPD3, PNMT, SYNPO, MX1, IFNG, NR6A1, ACTC1, RSAD2, ADRA2C, BARD1, HTR1B, FGF16, TENM2, CDKAL1, SHOX2, SGK1, RIBC2, SKIL, NGB, ASB7, MYO15A, SLC5A5, KRT5, ZNF112, TFAP2B, VPS50, CD80, ATP4A, ARPP21, SERPINB2, TLX1, EFHD1, P2RY4
##
## Gene Set: HALLMARK_PANCREAS_BETA_CELLS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PANCREAS_BETA_CELLS
## Genes: PAX6, NEUROD1, ISL1, NKX2-2, PCSK1, NKX6-1, SLC2A2, SEC11A, DCX, SPCS1, FOXA2, GCK, MAFB, INS, PDX1, ABCC8, IAPP, SRP9, NEUROG3, FOXO1, AKT3, GCG, DPP4, PAX4, SYT13, SCGN, HNF1A, STXBP1, CHGA, VDR, PCSK2, INSM1, SST, ELP4, SRPRB, PAK3, G6PC2, PKLR, LMO2, SRP14The goal is to replace the gene names with Entrez ID extracted from the first “gene_info” file
# Create lists for mapping symbols and synonyms to GeneID
symbol_to_id <- exploded_data %>%
select(Symbol, GeneID) %>%
deframe()
# Split synonyms and create a mapping
exploded_data <- exploded_data %>%
mutate(Synonyms = str_split(Synonyms, pattern = "\\|")) %>%
unnest(Synonyms)
synonyms_to_id <- exploded_data %>%
select(Synonyms, GeneID) %>%
deframe()
# Function to read the gmt file and replace the gene names with IDs
read_gmt <- function(file_path, symbol_to_id, synonyms_to_id) {
lines <- readLines(file_path)
gene_sets <- map(lines, function(line) {
parts <- str_split(line, "\t")[[1]]
gene_set_name <- parts[1]
description <- parts[2]
genes <- parts[3:length(parts)]
# If description is present in genes, remove it
if (description %in% genes) {
genes <- setdiff(genes, description)
description <- NULL
}
# Replace the gene names with their IDs
genes <- map_chr(genes, function(gene) {
if (gene %in% names(symbol_to_id)) {
as.character(symbol_to_id[[gene]])
} else if (gene %in% names(synonyms_to_id)) {
as.character(synonyms_to_id[[gene]])
} else {
NA_character_
}
})
list(gene_set_name = gene_set_name, description = description, genes = genes)
})
gene_sets
}
# Function to print all gene sets
print_all_gene_sets <- function(gene_sets) {
for (gene_set in gene_sets) {
cat(paste("Gene Set: ", gene_set$gene_set_name, "\n"))
cat(paste("Description: ", gene_set$description, "\n"))
cat(paste("Genes: ", paste(gene_set$genes, collapse = ", "), "\n\n"))
}
}
# Function to write the gene sets to a .gmt file
write_gmt <- function(gene_sets, file_name) {
file_conn <- file(file_name, "w")
for (gene_set in gene_sets) {
lines <- c(paste("Gene Set: ", gene_set$gene_set_name),
paste("Description: ", gene_set$description),
paste("Genes: ", paste(gene_set$genes, collapse = ", ")))
writeLines(lines, file_conn)
writeLines("", file_conn) # add a newline after each gene set
}
close(file_conn)
}
# Use the function
gene_sets <- read_gmt("D:\\R_Tutorials\\BioInformatics\\Entrez_geneIDmapping\\h.all.v2023.1.Hs.symbols.gmt", symbol_to_id, synonyms_to_id)
# Print all gene sets
print_all_gene_sets(gene_sets)## Gene Set: HALLMARK_TNFA_SIGNALING_VIA_NFKB
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_TNFA_SIGNALING_VIA_NFKB
## Genes: 3726, 2920, 467, 4792, 7128, 5743, 2919, 8870, 9308, 6364, 2921, 23764, 4791, 7127, 1839, 1316, 330, 5329, 7538, 3383, 3725, 1960, 3553, 597, 23645, 80149, 6648, 4929, 3552, 5971, 7185, 7832, 1843, 1326, 2114, 2152, 6385, 1958, 3569, 7124, 23135, 4790, 3976, 5806, 8061, 3164, 182, 6351, 2643, 6347, 1827, 1844, 10938, 9592, 5966, 8837, 8767, 4794, 8013, 22822, 51278, 8744, 2669, 1647, 3627, 10769, 8553, 1959, 9021, 11182, 5734, 1847, 5055, 4783, 5054, 10221, 25976, 5970, 329, 6372, 9516, 7130, 960, 3624, 5328, 4609, 3604, 6446, 10318, 10135, 2355, 10957, 3398, 969, 3575, 1942, 7262, 5209, 6352, 79693, 3460, 8878, 10950, 4616, 8942, 50486, 694, 4170, 7422, 5606, 1026, 3491, 10010, 3433, 3606, 7280, 3659, 2353, 4973, 388, 374, 4814, 65986, 8613, 9314, 6373, 6303, 1435, 1880, 56937, 5791, 7097, 57007, 7071, 4082, 3914, 1051, 9322, 2150, 687, 3949, 7050, 127544, 55332, 2683, 11080, 1437, 5142, 8303, 5341, 6776, 23258, 595, 23586, 8877, 941, 25816, 57018, 2526, 9034, 80176, 8848, 9334, 150094, 23529, 4780, 2354, 5187, 10725, 490, 3593, 3572, 9120, 19, 3280, 604, 8660, 6515, 1052, 51561, 4088, 6890, 9242, 64135, 3601, 79155, 602, 24145, 24147, 1906, 10209, 650, 1846, 10611, 23308, 9945, 10365, 3371, 5271, 4084
##
## Gene Set: HALLMARK_HYPOXIA
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HYPOXIA
## Genes: 5230, 5163, 2632, 5211, 226, 2026, 5236, 10397, 3099, 230, 2821, 4601, 6513, 5033, 133, 8974, 2023, 5214, 205, 26355, 5209, 7422, 665, 7167, 30001, 55818, 901, 3939, 2997, 2597, 8553, 51129, 3725, 5054, 4015, 2645, 8497, 23764, 54541, 6515, 3486, 4783, 2353, 3516, 3098, 10370, 3669, 2584, 26118, 5837, 6781, 23036, 694, 123, 1466, 7436, 23210, 2131, 2152, 5165, 55139, 7360, 229, 8614, 54206, 2027, 10957, 3162, 5228, 26330, 9435, 55076, 63827, 467, 857, 272, 2719, 3340, 8660, 8819, 2548, 6385, 8987, 8870, 5313, 3484, 5329, 112464, 8839, 9215, 25819, 6275, 58528, 7538, 1956, 1907, 3423, 1026, 6095, 1843, 4282, 5507, 10570, 11015, 1837, 136, 9957, 284119, 2908, 1316, 2239, 3491, 7128, 771, 3073, 633, 23645, 55276, 5292, 25824, 55577, 1027, 680, 8277, 4493, 538, 4502, 9672, 25976, 5317, 302, 5224, 1649, 5578, 2542, 7852, 1944, 1356, 8609, 1490, 9469, 7163, 56925, 124872, 10891, 596, 2651, 3036, 54800, 949, 6576, 6383, 839, 7428, 2309, 5155, 126792, 6518, 8406, 1942, 2745, 57007, 5066, 7045, 1634, 6478, 51316, 2203, 8459, 5260, 4627, 1028, 9380, 5105, 3623, 3309, 8509, 23327, 7162, 7511, 3569, 6533, 4214, 3948, 9590, 26136, 3798, 3906, 1289, 2817, 3069, 10994, 1463, 7052, 2113, 3219, 8991, 2355, 6820, 7043
##
## Gene Set: HALLMARK_CHOLESTEROL_HOMEOSTASIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_CHOLESTEROL_HOMEOSTASIS
## Genes: 2224, 1595, 3422, 2222, 1717, 6713, 3157, 50814, 4047, 4597, 3949, 7108, 230, 10682, 6319, 10654, 4598, 4023, 6309, 9415, 3156, 51478, 312, 6721, 5833, 55902, 467, 127, 23474, 1891, 875, 2990, 2194, 3958, 22809, 308, 94241, 1119, 2946, 39, 552, 5359, 1191, 54206, 57761, 58191, 51330, 71, 182, 5641, 26270, 493869, 10957, 118429, 114569, 928, 5468, 2731, 6811, 134429, 1499, 27346, 116496, 5165, 5329, 7869, 2770, 20, 6311, 4783, 214, 2171, 6282, 132864
##
## Gene Set: HALLMARK_MITOTIC_SPINDLE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MITOTIC_SPINDLE
## Genes: 9181, 23332, 3832, 9493, 57679, 382, 4650, 4627, 10426, 9793, 29127, 57580, 50650, 4926, 6711, 11004, 3799, 7272, 324, 11190, 5048, 10435, 9371, 55704, 56992, 332, 116840, 4763, 7248, 996, 11064, 114791, 24137, 22919, 55785, 675, 5347, 5921, 4751, 8936, 7153, 7204, 9826, 10300, 9055, 54443, 55755, 9126, 10844, 9700, 55201, 201176, 9732, 29901, 3619, 394, 2934, 10276, 10128, 23637, 2317, 64411, 121512, 29, 55835, 4690, 1063, 9585, 10163, 4628, 1062, 9266, 4281, 3831, 57787, 127829, 9702, 8409, 393, 23580, 163786, 9113, 4983, 8976, 4296, 6654, 25, 7074, 23095, 6453, 134549, 8440, 9787, 613, 10048, 2037, 10801, 11104, 51174, 22974, 3797, 357, 85378, 6709, 23022, 23647, 9735, 84376, 25777, 58526, 1739, 2316, 79658, 8476, 23365, 4082, 51199, 5108, 10928, 7430, 85464, 983, 22930, 10160, 11346, 54509, 1894, 2035, 51735, 3835, 84333, 6780, 396, 6790, 26271, 51203, 5829, 9564, 23607, 11214, 10013, 22994, 3996, 23192, 5116, 7840, 11133, 667, 22920, 151987, 9411, 9462, 9133, 80119, 5922, 4739, 8243, 81, 5311, 7461, 998, 10403, 9874, 9344, 6904, 832, 1794, 2017, 10051, 10565, 7277, 4001, 10006, 6093, 55125, 699, 50628, 64857, 253260, 10018, 1778, 6624, 8874, 140735, 4643, 274, 4853, 5981, 10611, 89941, 8470, 11135, 7414, 6249, 23012, 7531, 9771, 55722, 1453
##
## Gene Set: HALLMARK_WNT_BETA_CATENIN_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_WNT_BETA_CATENIN_SIGNALING
## Genes: 4609, 1499, 3714, 4851, 28514, 8313, 5664, 8321, 4855, 51176, 8312, 85407, 81029, 8454, 182, 9794, 2648, 2770, 7475, 5727, 9612, 27121, 3066, 22943, 6932, 7471, 8650, 6868, 1856, 5467, 23385, 10014, 894, 10023, 1454, 3516, 8325, 7157, 6502, 23493, 23462, 79885
##
## Gene Set: HALLMARK_TGF_BETA_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_TGF_BETA_SIGNALING
## Genes: 7046, 4092, 7040, 64750, 57154, 659, 6498, 6497, 90, 56937, 9612, 5054, 3726, 4086, 4091, 23645, 7050, 5045, 4088, 2280, 6885, 657, 1499, 28996, 7071, 650, 2022, 324, 5494, 331, 999, 3397, 7044, 1028, 51592, 11031, 7082, 6574, 1025, 3399, 9241, 51742, 3460, 3398, 5499, 6711, 25937, 8412, 7057, 2339, 3065, 7323, 4053, 387
##
## Gene Set: HALLMARK_IL6_JAK_STAT3_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_IL6_JAK_STAT3_SIGNALING
## Genes: 3566, 3572, 6772, 3554, 1439, 9021, 6774, 9180, 3561, 3459, 7297, 3597, 7097, 3460, 3588, 3569, 7850, 3563, 3454, 7132, 4615, 91, 1441, 3690, 5967, 2919, 2, 1438, 3601, 10379, 56034, 10456, 578, 10148, 83729, 64109, 7133, 929, 5770, 5771, 3553, 1435, 8809, 7124, 5196, 10563, 4055, 355, 23765, 3627, 3581, 10254, 51330, 6773, 3162, 3953, 867, 928, 2921, 7040, 1326, 3676, 952, 3725, 8651, 94, 5292, 27242, 23533, 2885, 3659, 1791, 1437, 3559, 5781, 3594, 1230, 1271, 5320, 4283, 960, 3574, 6373, 6354, 4050, 55540, 948
##
## Gene Set: HALLMARK_DNA_REPAIR
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_DNA_REPAIR
## Genes: 5437, 5430, 5436, 5434, 5439, 5435, 5432, 5440, 2967, 5433, 2071, 1643, 9533, 7508, 5111, 5438, 6827, 10714, 84265, 10623, 2959, 51082, 22916, 7936, 2962, 2073, 3978, 2067, 2072, 57804, 25920, 5982, 8178, 6881, 50484, 6829, 6119, 10302, 6749, 5983, 6118, 6924, 6883, 51497, 6884, 6878, 6880, 2958, 155382, 4830, 8731, 2068, 56655, 79720, 51251, 6621, 8086, 30834, 5984, 3704, 9883, 55290, 5985, 29901, 10978, 4833, 5557, 51160, 7251, 8237, 9013, 6895, 5429, 1069, 5424, 124583, 5142, 54487, 5888, 6834, 4860, 100, 4832, 9328, 30833, 203, 2965, 3059, 353, 1161, 3615, 5423, 6386, 10946, 1603, 65109, 2987, 7157, 11047, 29927, 23649, 2237, 286075, 53343, 5148, 7298, 10134, 1642, 4799, 5893, 112, 23204, 1716, 27343, 4090, 4350, 1854, 5422, 192670, 5898, 11130, 4059, 7084, 1479, 404672, 3251, 552900, 2879, 25874, 978, 10189, 64976, 4882, 5980, 8721, 1687, 10959, 6809, 8480, 7372, 10289, 50808, 11051, 9978, 6431, 51292, 51164, 10063, 129607, 10309
##
## Gene Set: HALLMARK_G2M_CHECKPOINT
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_G2M_CHECKPOINT
## Genes: 6790, 890, 7153, 9133, 1058, 332, 991, 5347, 7272, 9055, 10403, 3832, 51203, 1164, 11004, 4288, 9212, 22974, 10051, 699, 1063, 29127, 1062, 9493, 11065, 4175, 4172, 9232, 983, 24137, 9700, 4085, 4751, 3835, 3161, 3838, 1033, 993, 3014, 994, 10733, 990, 899, 4174, 4001, 1871, 56992, 1111, 27338, 7468, 3149, 10926, 10460, 4171, 1031, 1027, 2176, 4678, 10274, 51659, 26271, 10721, 2146, 5885, 3925, 6839, 5558, 1869, 10036, 9221, 2935, 9184, 8243, 3609, 8317, 3619, 1163, 9156, 3015, 7027, 595, 3837, 51155, 3930, 3364, 9585, 7150, 23047, 6426, 6491, 25, 1841, 996, 580, 22809, 8318, 4953, 7514, 6421, 7112, 5371, 675, 10664, 57082, 387893, 81539, 6434, 4605, 10024, 11044, 8452, 1432, 85236, 4609, 262, 10951, 5119, 1736, 91746, 904, 7040, 546, 3980, 10762, 8140, 5933, 4926, 8438, 1946, 8899, 7371, 5926, 8454, 5976, 1810, 4331, 10592, 10432, 6118, 6713, 23594, 1019, 5426, 9462, 3226, 9252, 8451, 6541, 1112, 3159, 6760, 10293, 10419, 8065, 10212, 4082, 55872, 5001, 8819, 11104, 3184, 23649, 7290, 3091, 10492, 7090, 4691, 5887, 1870, 1950, 3151, 10772, 6632, 9994, 6599, 6558, 4853, 30000, 4088, 51776, 3312, 10146, 26255, 1756, 4211, 3192, 6427, 4502, 4928, 2130, 3799, 22823, 1874, 602, 5813, 4212, 5048, 7486, 94239, 4957
##
## Gene Set: HALLMARK_APOPTOSIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APOPTOSIS
## Genes: 836, 842, 1676, 840, 8837, 330, 5366, 841, 3725, 10018, 4170, 3553, 6709, 56616, 581, 638, 3552, 637, 1026, 1647, 1649, 1027, 7124, 2934, 8743, 839, 8878, 356, 1960, 960, 355, 3606, 3489, 5551, 1611, 595, 10950, 2149, 6304, 665, 837, 51330, 1387, 388, 2878, 5159, 706, 894, 331, 7076, 1499, 3659, 3315, 118, 7077, 7832, 7078, 51176, 834, 2876, 8915, 3482, 994, 150209, 952, 5534, 3082, 1191, 467, 3958, 4060, 4000, 4616, 1017, 3456, 54884, 4092, 6647, 5747, 2026, 3162, 8870, 10017, 914, 2643, 4313, 7417, 6890, 5327, 3459, 351, 672, 6093, 5663, 1634, 5664, 6648, 90427, 2069, 3875, 7042, 5970, 7465, 5914, 929, 969, 8682, 5611, 835, 1491, 5330, 650, 3148, 9890, 3005, 7049, 10682, 10628, 56172, 89941, 1540, 2944, 2936, 633, 598, 2769, 4255, 5538, 2147, 3569, 6309, 10410, 6041, 2012, 857, 10059, 301, 7153, 3669, 6574, 8567, 5526, 10134, 2065, 4739, 6303, 27250, 599, 9638, 2064, 3301, 7818, 1806, 4744, 5058, 2232, 2879, 2107, 8900, 3000, 552
##
## Gene Set: HALLMARK_NOTCH_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_NOTCH_SIGNALING
## Genes: 182, 4854, 4853, 51107, 3280, 595, 8321, 5664, 8324, 1840, 28514, 7855, 84441, 4851, 55851, 7474, 8454, 7472, 23220, 8819, 5467, 2648, 26508, 6500, 9978, 6934, 408, 3955, 5578, 113878, 10402, 23291
##
## Gene Set: HALLMARK_ADIPOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ADIPOGENESIS
## Genes: 2167, 9370, 5468, 3991, 8694, 4023, 1376, 948, 57678, 79602, 10449, 2109, 51, 34, 3033, 3417, 10580, 35, 83549, 6342, 1666, 1031, 6888, 7263, 56922, 5236, 7905, 23786, 1468, 4199, 5264, 415116, 7532, 4706, 2820, 149685, 1892, 5860, 1431, 1891, 6576, 33, 10140, 80273, 1384, 2632, 8436, 949, 10400, 400916, 204, 348, 29796, 10010, 51129, 50, 2184, 47, 3459, 8884, 84522, 2053, 3421, 2878, 84173, 5004, 54884, 2101, 26275, 8802, 6776, 3679, 56246, 123, 1537, 217, 26994, 226, 6817, 1652, 6390, 977, 376497, 593, 718, 3952, 112, 79071, 4056, 8404, 55177, 23788, 65124, 6510, 51727, 92840, 4698, 8322, 128338, 4259, 483, 56729, 2040, 23344, 27069, 29103, 1647, 7423, 5211, 51805, 64859, 1580, 5495, 369, 284119, 1282, 10989, 51635, 1306, 4836, 84274, 3910, 56894, 11176, 3419, 3977, 10113, 5733, 10243, 5209, 2879, 8082, 58472, 54996, 1738, 80760, 9936, 64225, 137964, 10162, 7086, 7384, 847, 4958, 1737, 29088, 8780, 10313, 1147, 9908, 6391, 25813, 10124, 6623, 27250, 57017, 334, 6647, 55037, 23187, 5168, 26353, 9131, 901, 84919, 4191, 19, 1349, 4638, 1351, 25979, 84895, 11343, 6453, 1717, 6239, 134147, 7316, 539, 10935, 1629, 4722, 28512, 83871, 1149, 27089, 5195, 604, 1337, 4189, 8491, 284, 29979, 4713, 6573, 11194, 130814, 5447, 7351, 10975
##
## Gene Set: HALLMARK_ESTROGEN_RESPONSE_EARLY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ESTROGEN_RESPONSE_EARLY
## Genes: 9687, 771, 9368, 4602, 8416, 3487, 55638, 4886, 5174, 8204, 79083, 26353, 1960, 3880, 26018, 23030, 5241, 22836, 7164, 54898, 5979, 7162, 7031, 4137, 6337, 18, 2317, 7494, 1952, 11031, 4603, 55686, 399665, 4477, 8614, 54463, 6478, 7739, 10560, 6509, 2274, 596, 5366, 374, 58495, 25987, 115, 10125, 4582, 23254, 11001, 2288, 6387, 64699, 5914, 55540, 863, 7033, 7357, 595, 6584, 7466, 9536, 23286, 8839, 4609, 3705, 84187, 403, 23389, 7869, 3875, 6566, 27134, 1836, 9214, 6820, 28966, 7022, 22996, 2697, 11098, 10439, 51195, 79754, 25976, 21, 2444, 10202, 360, 60598, 60436, 2296, 1999, 65055, 8800, 5420, 9314, 573, 9620, 11145, 8140, 744, 7074, 1366, 26509, 5932, 56944, 2674, 10160, 6840, 7052, 64798, 56603, 9060, 6505, 10395, 3717, 4299, 5655, 5029, 645, 1154, 2717, 120, 27295, 55793, 2353, 3856, 54020, 2683, 799, 80004, 3480, 4681, 2810, 23596, 11057, 367, 25800, 91683, 960, 9862, 64919, 124583, 3860, 3866, 10140, 6542, 3898, 347733, 23329, 23541, 23052, 55806, 949, 9612, 29984, 22876, 10105, 9249, 2222, 9846, 9094, 7071, 3280, 2289, 6513, 267, 55191, 3625, 8553, 794, 2194, 56994, 10514, 60481, 6990, 3983, 6658, 57419, 64284, 375449, 8645, 1997, 6196, 81875, 3572, 9145, 9467, 221, 79875, 9022, 29107, 89797, 23223, 107, 1717, 4277, 8165
##
## Gene Set: HALLMARK_ESTROGEN_RESPONSE_LATE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ESTROGEN_RESPONSE_LATE
## Genes: 7031, 9368, 7164, 11098, 771, 5174, 8416, 1952, 27134, 5241, 5979, 4602, 7162, 1960, 403, 10439, 4886, 6337, 7494, 374, 55540, 8204, 445, 7033, 2288, 11001, 7869, 2852, 3993, 10551, 3880, 8839, 645, 2317, 27250, 799, 3487, 56521, 7074, 27075, 6387, 11031, 11187, 56603, 2289, 6478, 3669, 64699, 12, 7466, 4137, 27295, 5932, 2707, 5618, 6509, 2353, 11145, 8140, 5104, 3613, 1717, 26509, 999, 2013, 58495, 9231, 6658, 56994, 5655, 60481, 51195, 3717, 1836, 6584, 3705, 5121, 9060, 4665, 399665, 596, 51599, 9254, 760, 429, 8309, 1154, 2717, 9536, 64065, 23596, 3860, 26353, 7358, 9022, 11012, 10761, 11057, 949, 51181, 595, 2810, 21, 6820, 8900, 6491, 4277, 7538, 857, 4681, 960, 55806, 9455, 10950, 51083, 2109, 573, 2444, 6566, 4299, 7022, 3547, 3251, 990, 10160, 267, 10202, 29107, 6280, 2030, 57419, 2296, 10112, 10140, 2222, 64215, 7177, 7264, 2261, 6446, 3398, 2582, 10538, 5603, 2171, 4232, 3716, 57834, 8645, 1363, 7517, 9547, 57758, 991, 3572, 51659, 23650, 10497, 3918, 9215, 29988, 5364, 5577, 6196, 22824, 7980, 5265, 7134, 3158, 224, 928, 3418, 6652, 4192, 221, 5733, 9135, 9314, 10105, 29887, 56339, 10733, 1345, 6768, 9612, 4338, 10874, 7054, 10535, 64377, 7263, 7153, 1152, 4057, 1844, 5777, 493, 10610, 120, 6990
##
## Gene Set: HALLMARK_ANDROGEN_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ANDROGEN_RESPONSE
## Genes: 354, 3817, 2181, 8554, 10645, 4824, 7113, 10513, 55839, 658, 4094, 3992, 65986, 3156, 60559, 3638, 55768, 51465, 2005, 10257, 60481, 220, 445347, 563, 11057, 6303, 1622, 1718, 6652, 27347, 7163, 3422, 567, 9053, 4189, 2289, 8916, 5238, 9455, 22936, 6675, 9871, 3998, 56937, 8821, 23223, 6414, 10397, 3880, 3685, 2683, 4117, 25803, 2936, 3856, 3977, 8611, 79689, 2982, 6728, 896, 10788, 5867, 1836, 6611, 57178, 6446, 10461, 3248, 56172, 2773, 6722, 54407, 3157, 84159, 8555, 25816, 7520, 23171, 87, 6197, 8848, 10611, 23585, 9510, 8031, 9590, 6319, 2185, 1021, 11047, 3005, 51171, 9218, 595, 2547, 10627, 7329, 11099, 207, 5036
##
## Gene Set: HALLMARK_MYOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYOGENESIS
## Genes: 58, 7136, 4632, 7134, 7125, 4621, 29895, 7140, 7139, 845, 70, 8736, 4635, 4608, 4625, 4626, 88, 7135, 1410, 6445, 3270, 7138, 1674, 58529, 6261, 8048, 8038, 487, 1158, 6840, 9172, 140465, 7169, 4633, 1160, 274, 4619, 2027, 2314, 5348, 7170, 1756, 3486, 1140, 10290, 2273, 89, 8557, 4638, 4634, 5837, 11155, 1339, 2170, 58498, 3693, 1134, 8082, 1281, 3756, 2702, 4618, 4620, 6300, 5224, 4656, 4622, 165, 1839, 4208, 4842, 1266, 3490, 8912, 2934, 786, 8497, 4151, 8877, 29970, 4209, 6525, 1026, 2548, 7164, 3316, 6442, 624, 1346, 1284, 23654, 1489, 1306, 3757, 375790, 4641, 22933, 6444, 10580, 7433, 2247, 2281, 7004, 844, 688, 9260, 203, 6876, 6016, 4205, 26287, 208, 3908, 6764, 3475, 4684, 9144, 9463, 1293, 1384, 1760, 4629, 4627, 3479, 1152, 10468, 2878, 5816, 11156, 3688, 26353, 43, 1146, 5569, 89797, 10014, 537, 1191, 2180, 1277, 22808, 9659, 178, 2065, 11345, 859, 8553, 5507, 9215, 23175, 1012, 1728, 5621, 5664, 23604, 4046, 6535, 65055, 1974, 25970, 4607, 3679, 6709, 10174, 5091, 6319, 2775, 8614, 1675, 5925, 573, 3983, 5740, 22924, 79629, 6450, 4851, 7249, 7040, 2224, 816, 2049, 4616, 351, 187, 3691, 6649, 4303, 10278, 5213, 1292, 1837, 3801, 6678, 25803, 6588, 25937, 948, 115, 347
##
## Gene Set: HALLMARK_PROTEIN_SECRETION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PROTEIN_SECRETION
## Genes: 372, 10972, 9276, 51552, 538, 1315, 3920, 1956, 3482, 11316, 5538, 1176, 10282, 1182, 1175, 1213, 1173, 11079, 23095, 375, 4952, 3382, 23041, 10564, 10959, 8774, 81542, 5066, 9522, 6456, 5862, 22796, 9341, 51614, 23033, 8674, 9525, 8775, 2778, 8417, 9554, 11311, 8675, 10652, 6643, 10565, 1211, 1203, 4074, 259230, 8615, 7251, 10059, 3998, 286451, 27236, 81611, 7103, 667, 9805, 22872, 6845, 10067, 163, 57403, 8546, 7163, 51606, 8729, 3875, 858, 476, 664, 9183, 2581, 102, 5868, 2803, 9871, 164, 5594, 9570, 6197, 8027, 19, 8773, 6647, 2717, 525, 23673, 967, 10040, 8082, 26286, 9367, 1075
##
## Gene Set: HALLMARK_INTERFERON_ALPHA_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INTERFERON_ALPHA_RESPONSE
## Genes: 4599, 9636, 4938, 3437, 10561, 3430, 3665, 91543, 10964, 8519, 3429, 10379, 8638, 5610, 3433, 3627, 6890, 3431, 55601, 9246, 11274, 5696, 64135, 684, 3959, 103, 3669, 2634, 3659, 5359, 5698, 55008, 54809, 129607, 10410, 64108, 6773, 219285, 4061, 10581, 85441, 6373, 6737, 54625, 7726, 64761, 9111, 55072, 3107, 834, 9830, 23424, 79132, 83666, 87178, 7706, 5720, 7453, 94240, 7318, 5721, 567, 85363, 716, 51056, 27074, 115361, 135112, 55281, 972, 2766, 5684, 10544, 3574, 10437, 3660, 1435, 3600, 1267, 55603, 3566, 23070, 961, 10161, 4343, 841, 10628, 81894, 6402, 10906, 116071, 8767, 9034, 51667, 11054, 93343, 1997
##
## Gene Set: HALLMARK_INTERFERON_GAMMA_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INTERFERON_GAMMA_RESPONSE
## Genes: 6772, 9636, 3434, 4599, 3437, 3430, 3665, 3433, 4939, 6890, 5610, 91543, 4600, 3659, 4940, 8743, 10379, 3627, 10561, 684, 54739, 3431, 8638, 5696, 10964, 10410, 55601, 3959, 115361, 3394, 5698, 5371, 64135, 9246, 3429, 103, 4061, 6773, 4283, 3587, 5321, 6737, 11274, 5743, 94240, 716, 23586, 3600, 84166, 9111, 3620, 5699, 6373, 3695, 25939, 55008, 129607, 219285, 64108, 5771, 54625, 7127, 10581, 5359, 8651, 834, 3383, 7453, 5720, 3669, 3660, 9830, 2209, 55016, 9021, 3717, 3108, 64761, 7130, 7726, 7412, 29126, 4261, 10135, 6403, 2841, 2357, 85441, 5721, 710, 6352, 55072, 6648, 7706, 51056, 5684, 57674, 57162, 629, 942, 10628, 3117, 2643, 4860, 6354, 5777, 84888, 3566, 87178, 79132, 694, 841, 10437, 6347, 10875, 840, 6398, 3601, 958, 10906, 3123, 163351, 3937, 3135, 4502, 8737, 22914, 7378, 5690, 23424, 3091, 317649, 8673, 5214, 952, 81030, 55024, 27348, 10616, 5142, 9961, 3574, 669, 23070, 26053, 567, 8767, 969, 4615, 5683, 5292, 10392, 3075, 6892, 81894, 5770, 7128, 8082, 9688, 10797, 1026, 3662, 4790, 116071, 3106, 26524, 3663, 57823, 51015, 9934, 6774, 8202, 3105, 3569, 3001, 3455, 972, 51735, 837, 355, 11054, 10124, 6717, 256586, 1439, 8869, 715, 836, 1240, 4792, 196410, 7903, 6375, 3560, 10791, 10068, 57169, 84159, 80830, 6775
##
## Gene Set: HALLMARK_APICAL_JUNCTION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APICAL_JUNCTION
## Genes: 87, 1366, 89, 149461, 1739, 7082, 1308, 5818, 9080, 1001, 1500, 999, 51474, 7414, 357, 25945, 5819, 23562, 5788, 7070, 7408, 3688, 7791, 81, 1364, 57863, 3675, 4771, 2683, 91624, 1004, 8751, 5747, 3033, 3914, 5010, 1002, 3667, 10174, 9073, 51466, 24146, 7059, 81607, 83700, 1009, 3691, 5921, 208, 51754, 3909, 6251, 3383, 51208, 2962, 7248, 3918, 4892, 1495, 4267, 6624, 1307, 2771, 7045, 64398, 3728, 88, 3638, 143903, 5216, 1265, 9344, 347902, 4192, 3636, 9074, 10109, 6714, 5089, 1432, 5871, 5728, 794, 1272, 7106, 1462, 1006, 478, 2037, 10398, 10290, 147, 6850, 253559, 247, 6376, 4628, 1758, 1041, 5603, 103910, 5880, 2200, 1823, 947, 3386, 4478, 5600, 70, 7185, 92359, 3673, 8515, 10458, 9459, 71, 4597, 79849, 8754, 5097, 9353, 3881, 8910, 2770, 5291, 57555, 7533, 55742, 1384, 11096, 268, 1956, 3384, 29126, 1013, 6464, 10205, 65266, 23114, 8503, 9672, 140885, 2886, 2318, 84552, 1297, 9379, 51776, 7781, 54509, 649, 4313, 7087, 7450, 4627, 30835, 7412, 8449, 72, 257194, 4763, 8745, 5335, 3757, 51148, 4902, 8517, 1825, 60, 7283, 5522, 3265, 4318, 4982, 5310, 1024, 2533, 57463, 80381, 2593, 54413, 8935, 6237, 10487, 60412, 58, 7073, 26119, 7410, 10000, 8189, 6810, 5175, 8174, 3680, 942, 7216, 7122, 9019, 8976
##
## Gene Set: HALLMARK_APICAL_SURFACE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_APICAL_SURFACE
## Genes: 2683, 51458, 4118, 27076, 5314, 50617, 202, 357, 8406, 266727, 51754, 7070, 255738, 2050, 131566, 51738, 4067, 2619, 2319, 5329, 9465, 5205, 1946, 142680, 351, 2947, 3315, 6517, 3560, 146760, 23054, 55959, 102, 672, 2625, 84632, 3561, 11126, 79602, 116085, 22854, 80274, 6376, 9696
##
## Gene Set: HALLMARK_HEDGEHOG_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HEDGEHOG_SIGNALING
## Genes: 6469, 5727, 4897, 8829, 7857, 154796, 8633, 9289, 23462, 2735, 7070, 6585, 1021, 23493, 8828, 7090, 7088, 3897, 5340, 4825, 4763, 5921, 2114, 6252, 1400, 4627, 7422, 9620, 1271, 43, 5371, 8851, 7436, 4983, 8861, 1808
##
## Gene Set: HALLMARK_COMPLEMENT
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_COMPLEMENT
## Genes: 717, 716, 629, 715, 5054, 4323, 710, 1514, 2153, 4322, 2155, 1520, 5641, 5340, 712, 834, 3001, 8754, 808, 714, 7076, 1803, 3816, 3818, 966, 1380, 4324, 51056, 9806, 2159, 1508, 5265, 1519, 959, 868, 54704, 725, 5341, 2815, 5329, 718, 2147, 837, 6810, 1075, 9958, 1378, 1848, 5055, 2820, 3075, 2335, 948, 760, 5698, 60489, 2219, 3003, 5155, 1191, 843, 4035, 1509, 6280, 7454, 27154, 5327, 978, 4504, 840, 146547, 5216, 3002, 6047, 6935, 838, 3659, 10404, 8851, 475, 5290, 164656, 1368, 9986, 801, 23348, 8942, 10125, 9097, 3937, 2811, 3796, 59345, 3932, 4973, 5550, 51734, 4048, 23414, 4067, 88, 51548, 341, 5580, 3684, 160851, 4057, 23764, 30819, 27445, 55619, 10019, 5877, 6714, 51440, 4179, 11108, 2773, 735, 5516, 3660, 2534, 3717, 5321, 5547, 9101, 391, 91133, 3920, 5292, 2919, 2152, 2771, 842, 7511, 5359, 3665, 1604, 3309, 2783, 8445, 7941, 6283, 2885, 5251, 2793, 9732, 4321, 30818, 2230, 7077, 4317, 2207, 64145, 308, 1515, 25801, 10938, 5646, 1284, 1465, 23533, 462, 283, 200316, 2625, 1847, 836, 10600, 1356, 5663, 3988, 255738, 1608, 54331, 4199, 2764, 29106, 5531, 6352, 1512, 2157, 337, 3569, 11216, 64167, 80124, 3303, 5894, 4855, 151, 1051, 3172, 3958, 7128, 1012, 3697, 7980, 5294, 6284
##
## Gene Set: HALLMARK_UNFOLDED_PROTEIN_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UNFOLDED_PROTEIN_RESPONSE
## Genes: 468, 9709, 5073, 54512, 7184, 7494, 5393, 3309, 467, 51013, 56915, 440, 55738, 7466, 58477, 4189, 64061, 4800, 811, 8570, 5611, 23404, 8602, 22926, 10525, 9136, 10528, 30827, 3484, 4850, 167227, 10130, 9114, 10113, 22872, 9570, 27230, 4801, 55651, 1639, 8140, 6745, 9695, 23644, 9451, 10797, 6734, 9221, 2081, 55033, 7709, 55062, 10897, 6347, 1736, 1978, 1973, 1965, 9797, 11260, 25804, 79094, 8614, 10954, 64859, 27257, 55153, 1974, 1977, 3376, 1662, 50628, 6897, 5832, 54541, 3313, 23478, 9775, 10775, 30001, 1054, 9531, 11015, 1051, 4848, 6464, 60559, 3014, 6509, 6208, 4869, 57472, 1163, 29968, 1981, 7534, 64924, 23517, 3799, 55802, 3434, 55272, 28972, 55466, 7422, 9652, 7280, 2521, 5394, 1938, 55770, 10605, 8815
##
## Gene Set: HALLMARK_PI3K_AKT_MTOR_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PI3K_AKT_MTOR_SIGNALING
## Genes: 5599, 8503, 2885, 4793, 5608, 5601, 207, 5594, 5335, 57761, 2932, 5606, 1026, 5879, 8737, 84335, 10097, 5576, 7529, 3265, 5163, 200576, 29110, 10096, 1869, 4615, 3709, 8878, 6195, 5781, 79109, 23236, 5894, 814, 57521, 1072, 1019, 7186, 2792, 7334, 108, 1027, 10451, 2251, 51295, 5899, 375, 8569, 983, 5728, 396, 156, 8822, 1649, 51135, 7074, 1017, 2810, 5579, 9630, 1977, 1213, 7249, 27006, 5499, 1845, 7184, 3565, 6773, 6503, 1956, 81579, 5602, 811, 117145, 6016, 2872, 5519, 81617, 10094, 5308, 4690, 3561, 5216, 356, 10392, 27071, 7323, 51719, 1173, 6885, 5571, 1460, 5563, 466, 6513, 5300, 7132, 3932, 6197, 4803, 7852, 31, 4087, 10298
##
## Gene Set: HALLMARK_MTORC1_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MTORC1_SIGNALING
## Genes: 3992, 54541, 811, 3099, 5230, 8140, 1075, 2181, 6510, 4074, 7037, 1649, 27346, 3475, 5352, 7277, 29968, 11151, 3939, 10797, 9415, 7436, 7453, 6319, 5033, 10097, 3417, 6513, 2632, 871, 26471, 8624, 5723, 10135, 1026, 8553, 3313, 3309, 112399, 5641, 4860, 7494, 6503, 10212, 3336, 47, 23657, 6745, 2717, 8878, 5163, 5701, 5052, 27230, 57761, 4783, 3157, 2805, 7167, 79071, 440, 10213, 5685, 5464, 3251, 6790, 3156, 2597, 1719, 1717, 10989, 51377, 10652, 3638, 6713, 3488, 10437, 1595, 10875, 2023, 3422, 80777, 6472, 7296, 2539, 9368, 5861, 10682, 56902, 8503, 10096, 3949, 6515, 7323, 60481, 27101, 9695, 51382, 26136, 7108, 5684, 3689, 205, 6509, 10452, 6533, 5478, 120, 4199, 899, 2542, 226, 7832, 51569, 900, 6781, 4836, 5706, 2232, 6241, 1718, 5704, 1491, 10197, 5199, 10622, 31, 5860, 4171, 5718, 6309, 821, 6184, 3308, 116496, 29110, 23478, 586, 5693, 5719, 5236, 5347, 2745, 10987, 2107, 2932, 23165, 6652, 26227, 8833, 9136, 9521, 4048, 23753, 2286, 51109, 7852, 10962, 2729, 6917, 5606, 3329, 54843, 4173, 23645, 8615, 4793, 7374, 2965, 6117, 7184, 30001, 2936, 23760, 2058, 6715, 7283, 441024, 79602, 26747, 993, 11333, 134429, 699, 81873, 2821, 8894, 928, 488, 23062, 3145, 6016, 8935, 10963, 27071, 10061, 4802, 516, 5211, 908
##
## Gene Set: HALLMARK_E2F_TARGETS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_E2F_TARGETS
## Genes: 6790, 675, 9738, 1062, 1164, 64858, 1786, 29980, 8726, 9837, 84296, 3015, 3978, 4085, 4171, 4173, 4174, 4176, 9833, 253714, 84316, 4678, 11051, 23165, 23594, 5111, 10733, 5426, 5558, 10635, 5982, 6118, 6119, 6839, 7112, 29089, 197335, 983, 4172, 7153, 4175, 332, 9133, 6241, 3148, 701, 5983, 2146, 1111, 10051, 4288, 991, 5347, 11004, 9787, 9212, 993, 9319, 3014, 3161, 79733, 672, 4605, 5424, 29127, 1163, 3838, 4436, 1033, 29028, 6117, 3925, 54962, 7083, 55143, 9700, 9918, 5902, 4361, 24137, 4001, 3835, 7374, 8243, 898, 83461, 55723, 23649, 8914, 3070, 27338, 5591, 5901, 7398, 10615, 10714, 1854, 10460, 146909, 994, 6426, 64785, 9221, 7884, 11200, 57405, 580, 79077, 9126, 10535, 7913, 79019, 5889, 23468, 5981, 5425, 79075, 3609, 55635, 1633, 1031, 4609, 6941, 5810, 3930, 4683, 9232, 55148, 56655, 7283, 10664, 9125, 203068, 79677, 9183, 5036, 6749, 4673, 81611, 3149, 10527, 5885, 1019, 1026, 84312, 1503, 10111, 6434, 1434, 10606, 10274, 51747, 8493, 4830, 6427, 7514, 3184, 5395, 25842, 11340, 4292, 57122, 4999, 7157, 7037, 3159, 11168, 10212, 6628, 1027, 10797, 7465, 10549, 84844, 9238, 6470, 5631, 81624, 9972, 29893, 2547, 5411, 3364, 5931, 23047, 10528, 83463, 5511, 2935, 1029, 204, 11113, 54556, 51155, 10248, 10492, 1965, 55646, 9924, 147841
##
## Gene Set: HALLMARK_MYC_TARGETS_V1
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYC_TARGETS_V1
## Genes: 5111, 5714, 5713, 6418, 6627, 5901, 6427, 10146, 56910, 4869, 9184, 8664, 7514, 2091, 1973, 821, 4673, 11335, 7203, 708, 7307, 7332, 6742, 6426, 6950, 4171, 8662, 10213, 6626, 11137, 328, 10907, 10236, 5690, 3251, 4175, 4830, 6632, 1933, 3329, 790, 6141, 5230, 8886, 6187, 3939, 10856, 10921, 1965, 5902, 4174, 3376, 7324, 4609, 1176, 5984, 1854, 5685, 6188, 6637, 11331, 6741, 7458, 6428, 10575, 7027, 8894, 1019, 6634, 5707, 10399, 2806, 8761, 22948, 5634, 52, 26121, 10576, 3735, 7913, 1982, 11260, 6723, 10054, 3837, 5688, 6434, 9377, 5036, 5093, 3178, 890, 5478, 8669, 4999, 5683, 10492, 3066, 57819, 7411, 5687, 7555, 1017, 23435, 9221, 2935, 3181, 2107, 6128, 9868, 10728, 5682, 5706, 1503, 3336, 23196, 5496, 3184, 26135, 1478, 10549, 1977, 4953, 7398, 6146, 220988, 4686, 6175, 6059, 1964, 7531, 4176, 10971, 7416, 6599, 6633, 3192, 51020, 5709, 6240, 10291, 51690, 2079, 9045, 5691, 3475, 22916, 2739, 4706, 8454, 55651, 1207, 10155, 26156, 3183, 10987, 2547, 5250, 65005, 54107, 5425, 3015, 7965, 10528, 10935, 28973, 2058, 3838, 3326, 6164, 6732, 4085, 1665, 4173, 6193, 10574, 3068, 6194, 6629, 5704, 991, 7284, 9136, 8318, 7298, 3608, 7419, 3615, 23450, 51491, 6432, 26354, 23016, 6150, 5887, 6204, 5245, 9188, 1537, 26986
##
## Gene Set: HALLMARK_MYC_TARGETS_V2
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_MYC_TARGETS_V2
## Genes: 6573, 51154, 27346, 9136, 23481, 64216, 56915, 79711, 29078, 79050, 4609, 6723, 5036, 26354, 9221, 23160, 10244, 51491, 9238, 8886, 51388, 54663, 705, 3329, 10733, 4839, 56342, 10528, 10171, 4869, 7965, 23223, 23082, 6949, 4174, 3099, 11335, 5347, 5245, 4173, 1019, 1844, 10514, 27340, 10196, 2193, 9064, 81887, 80324, 3336, 3177, 79077, 6832, 6652, 92856, 83743, 7374, 10199
##
## Gene Set: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
## Genes: 1281, 1290, 1289, 2200, 1277, 2335, 1293, 5054, 1278, 1282, 1284, 1462, 3486, 7045, 6678, 4060, 3915, 4015, 3918, 1490, 6876, 1294, 4017, 1292, 3685, 7058, 1307, 4837, 7168, 1000, 4313, 1301, 7057, 2191, 633, 871, 11167, 10631, 7070, 6696, 3371, 7980, 22795, 3693, 4314, 7431, 4016, 10516, 1303, 2006, 1009, 1311, 6695, 649, 9235, 3909, 7076, 5768, 7078, 7412, 3491, 10085, 800, 57692, 2192, 6443, 1893, 3908, 10272, 7169, 3624, 1601, 2014, 10409, 3678, 4256, 7422, 2919, 7474, 6382, 5352, 5118, 26585, 3688, 50509, 388, 5654, 2247, 6641, 1647, 4232, 131578, 4982, 966, 59, 30008, 4147, 26577, 5270, 2817, 25890, 2517, 6586, 284217, 56937, 1296, 2201, 3485, 5217, 6385, 960, 4616, 3576, 11010, 290, 64175, 7424, 4323, 6444, 5351, 4148, 10398, 6535, 813, 5396, 51330, 2331, 3398, 2669, 5329, 4638, 7040, 6422, 8985, 3569, 333, 2199, 4487, 5806, 8325, 3725, 10979, 22943, 6591, 667, 7171, 1634, 2697, 5376, 3487, 1314, 4035, 3673, 2316, 8076, 5744, 7049, 6424, 3956, 5999, 1004, 6303, 4907, 1809, 5479, 7052, 6445, 3690, 8572, 115908, 1842, 9244, 374, 3600, 4176, 2619, 5645, 23705, 5021, 7857, 6372, 4312, 7128, 822, 10486, 25878, 2303, 50863, 2026, 355, 627, 8038, 5817, 6387, 5159, 9353, 4853, 79709, 2882, 7456
##
## Gene Set: HALLMARK_INFLAMMATORY_RESPONSE
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_INFLAMMATORY_RESPONSE
## Genes: 3627, 6347, 6352, 2357, 6364, 3552, 3576, 6354, 6367, 6373, 1236, 1906, 958, 4283, 3569, 3553, 7097, 3554, 969, 3383, 9034, 366, 2069, 719, 2769, 1240, 5734, 3976, 3600, 10135, 4986, 3696, 5724, 133, 5329, 4790, 3624, 5008, 8743, 9966, 3460, 2015, 3593, 1435, 6372, 3604, 4067, 92, 3949, 623, 3269, 2152, 684, 5739, 1604, 10203, 1440, 29933, 3566, 114548, 3601, 136, 2643, 4973, 5732, 1441, 4609, 5970, 7130, 3575, 3606, 2550, 3732, 8744, 10316, 3560, 7096, 1902, 3656, 8767, 4323, 5027, 4891, 6402, 5029, 19, 2867, 60675, 2773, 6869, 6541, 1026, 1536, 7076, 1839, 8578, 10148, 4792, 6717, 6542, 6361, 7098, 187, 9180, 3587, 5663, 1880, 490, 7133, 7439, 2719, 6324, 91, 3249, 10507, 1316, 962, 10663, 6506, 2811, 6892, 6004, 6504, 3932, 3091, 196, 9111, 391, 7162, 10886, 3454, 23308, 10125, 8519, 3759, 4061, 8809, 3586, 3738, 3037, 131566, 27074, 7432, 970, 5996, 1317, 11047, 10242, 5054, 4084, 558, 4210, 5817, 6369, 5142, 3937, 10630, 3665, 4233, 488, 1318, 7855, 3678, 166929, 8685, 929, 5610, 6098, 27032, 4693, 7832, 4481, 5791, 255488, 5099, 8877, 8807, 64108, 5894, 9435, 3690, 23095, 6401, 64127, 728, 2014, 23601, 6870, 8671, 4224, 55829, 4049, 23533, 23166, 3659, 3386, 5025, 10006, 6376, 9153
##
## Gene Set: HALLMARK_XENOBIOTIC_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_XENOBIOTIC_METABOLISM
## Genes: 1543, 2184, 51181, 1544, 2940, 1573, 1593, 126, 7358, 435, 1728, 211, 2948, 1562, 5805, 1528, 8309, 2052, 3931, 23169, 2937, 2328, 3417, 8644, 6580, 9446, 383, 1036, 2326, 223, 5447, 57447, 51733, 1891, 9536, 5166, 191, 1312, 316, 629, 23564, 3083, 2160, 1592, 64087, 866, 27232, 645, 26061, 4128, 8942, 1725, 5054, 6539, 2643, 51635, 9060, 217, 3290, 10237, 3735, 760, 9663, 847, 29785, 5909, 2203, 5950, 2646, 978, 4522, 131, 115817, 8876, 55748, 6533, 26998, 54677, 2571, 1646, 26007, 3479, 6747, 23710, 7009, 948, 1066, 6472, 28959, 2953, 5340, 3162, 10653, 218, 2936, 57406, 7498, 5467, 60481, 8529, 54884, 26999, 65018, 2729, 2099, 5372, 6999, 4502, 488, 1652, 2168, 53, 225, 2538, 1644, 8310, 51128, 2192, 128, 1401, 1244, 2114, 4864, 839, 670, 3554, 957, 7132, 3487, 5831, 51380, 7448, 3398, 2110, 3273, 7299, 7378, 9564, 873, 348, 6560, 27346, 283537, 5730, 4355, 22949, 366, 1969, 5699, 355, 51, 2618, 3251, 5226, 8714, 54498, 7274, 55502, 2651, 4121, 3484, 3700, 5627, 8460, 116842, 9054, 10857, 1586, 10776, 29950, 384, 3172, 5967, 6370, 10400, 50, 9361, 4836, 10728, 2159, 6898, 10299, 3728, 52, 4153, 7042, 2028, 3294, 27329, 5091, 10611, 1571, 586, 84913, 6510, 3394, 4814, 10717, 116285, 3697
##
## Gene Set: HALLMARK_FATTY_ACID_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_FATTY_ACID_METABOLISM
## Genes: 30, 10449, 33, 34, 10005, 51, 2180, 224, 131076, 1376, 1579, 1666, 1891, 1632, 60481, 2168, 2169, 3033, 26275, 3155, 51170, 3417, 4199, 11343, 23417, 5092, 54884, 6281, 8802, 8876, 1962, 223, 3032, 1892, 35, 760, 3028, 216, 37, 3295, 762, 126, 131, 5805, 4128, 51179, 51478, 84693, 39, 549, 3248, 2271, 3158, 210, 2819, 50, 873, 9380, 10965, 50486, 4191, 3320, 594, 7390, 7533, 3939, 1429, 8608, 11185, 7358, 2954, 3420, 4190, 1384, 2110, 948, 10455, 6392, 51703, 84263, 3157, 6391, 912, 2639, 2820, 218, 6584, 5162, 6999, 2194, 4683, 5720, 5465, 29781, 670, 4953, 765, 1738, 3052, 2052, 1743, 2326, 8639, 7389, 1374, 387893, 9246, 4282, 8801, 1371, 6611, 874, 4913, 1149, 3422, 51166, 92840, 10808, 328, 50814, 79602, 2182, 84532, 2027, 3421, 3956, 23173, 226, 6296, 4056, 728294, 158, 8803, 6389, 7503, 58505, 2752, 284541, 23710, 364, 1543, 9588, 10961, 3015, 26330, 1718, 2572, 5793, 259307, 58476, 5160, 5910, 1056, 644, 57515, 658, 51109, 2026
##
## Gene Set: HALLMARK_OXIDATIVE_PHOSPHORYLATION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_OXIDATIVE_PHOSPHORYLATION
## Genes: 4722, 7381, 4720, 6389, 7384, 4704, 4724, 4719, 4695, 4728, 6390, 23530, 539, 518, 374291, 498, 4723, 1329, 7388, 4694, 509, 506, 1349, 6392, 54205, 4700, 4706, 1351, 50, 516, 1537, 4712, 514, 9377, 7385, 1337, 513, 1345, 522, 4709, 3420, 4967, 4714, 6834, 1340, 4711, 4697, 4707, 1327, 1350, 7386, 6391, 9296, 1347, 8802, 4726, 4701, 2271, 4729, 5018, 4717, 10975, 4698, 1431, 9550, 515, 3052, 3032, 10476, 5160, 4702, 1738, 4976, 8402, 521, 5162, 9551, 4713, 3418, 10651, 7419, 4190, 517, 10989, 4191, 5250, 51382, 7417, 34, 9167, 10440, 529, 4696, 293, 3421, 37, 2108, 26520, 3419, 26521, 537, 26517, 27089, 22, 7416, 10632, 11331, 1666, 8803, 2806, 1737, 51606, 4708, 2230, 3030, 528, 4129, 4710, 29796, 2110, 2879, 8050, 9927, 9131, 10449, 2109, 1353, 1892, 23203, 533, 292, 1743, 1355, 1528, 211, 291, 1374, 788, 4552, 10063, 1727, 56993, 38, 64963, 527, 5166, 26519, 3939, 1632, 65003, 2395, 6183, 1352, 55288, 30, 36, 3945, 10884, 481, 56898, 8604, 92609, 64981, 81689, 51318, 3417, 3313, 29088, 64960, 9868, 10312, 23479, 5435, 4835, 4718, 56945, 5447, 8992, 5264, 51660, 2821, 10939, 3028, 840, 10935, 4259, 27429, 593, 10128, 54884, 1891, 89941, 581, 9617, 2746, 6832, 80273, 54704, 4329, 4942
##
## Gene Set: HALLMARK_GLYCOLYSIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_GLYCOLYSIS
## Genes: 5230, 226, 2023, 7167, 5214, 30001, 229, 7422, 4601, 5315, 3099, 3939, 2131, 1468, 2990, 5207, 5223, 5834, 205, 5033, 5373, 26355, 6382, 112399, 5091, 11285, 8789, 3486, 79586, 26229, 55501, 9653, 4351, 10007, 10327, 8497, 27087, 54480, 2539, 4191, 4166, 25796, 5224, 8534, 2817, 7264, 56052, 2673, 5631, 2805, 4190, 23443, 2584, 1956, 51129, 10370, 5352, 5768, 4200, 6676, 8974, 26330, 2026, 2806, 2132, 10165, 3161, 5165, 7852, 2239, 11319, 10020, 8704, 2530, 55586, 1462, 2719, 126792, 3309, 4199, 136, 7360, 4282, 140838, 23036, 8614, 8460, 55276, 2997, 8277, 7039, 9435, 5256, 3925, 2582, 4233, 3938, 8660, 51728, 2683, 1944, 56956, 11015, 6888, 10570, 7436, 960, 178, 6662, 54541, 3425, 839, 26035, 9276, 1824, 90161, 983, 5351, 6383, 29925, 22976, 50814, 5917, 9123, 2745, 79644, 9672, 3069, 1289, 9080, 7033, 6781, 10112, 2998, 2542, 64077, 6391, 4678, 6790, 10331, 3669, 3948, 10776, 1058, 9456, 638, 1528, 10456, 22796, 3597, 8996, 1365, 375790, 54982, 7295, 5066, 726, 5318, 10058, 1634, 29926, 10380, 283, 53836, 9514, 501, 4907, 3417, 5836, 4731, 9348, 5516, 5704, 7162, 7045, 2585, 1491, 3796, 8912, 55139, 8819, 10616, 1999, 6120, 8702, 55635, 58528, 8870, 223, 1738, 10461, 2729, 2288, 6647, 9862, 50808, 64132, 9048, 5478, 10164
##
## Gene Set: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
## Genes: 2936, 7001, 7296, 6647, 2729, 847, 2879, 4353, 5052, 9588, 2730, 7295, 6648, 10549, 55829, 9124, 10587, 10542, 2539, 4482, 4155, 140809, 1728, 9943, 51022, 3163, 2242, 5214, 4710, 2878, 57466, 1032, 4257, 4363, 2512, 475, 10494, 112398, 2068, 22904, 3726, 5524, 4046, 4700, 3087, 2745, 4720, 5621, 26034
##
## Gene Set: HALLMARK_P53_PATHWAY
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_P53_PATHWAY
## Genes: 1026, 7832, 4193, 900, 355, 10140, 1647, 23612, 6890, 1030, 2810, 64393, 1643, 9538, 64065, 54541, 467, 581, 27244, 2232, 55367, 6303, 1029, 64782, 8493, 2309, 694, 10628, 10560, 8870, 7157, 4851, 6236, 51181, 4814, 2353, 6281, 55294, 1263, 7508, 203, 51499, 578, 894, 317, 5154, 10397, 5900, 5268, 1606, 26999, 9314, 51447, 100, 8744, 11202, 5564, 2040, 8651, 10769, 834, 25898, 5111, 51065, 5925, 23645, 5429, 57799, 2073, 1012, 1649, 7040, 2517, 92815, 8626, 22824, 2052, 63874, 55766, 9618, 8722, 51278, 30851, 8848, 6004, 3265, 5820, 677, 6382, 49856, 5912, 56997, 23654, 10614, 10544, 8877, 55035, 50619, 6667, 3714, 9738, 55332, 6141, 1050, 23303, 4084, 10906, 29948, 57763, 1839, 5889, 3691, 57761, 3625, 8673, 4013, 18, 1509, 5791, 3094, 247, 7421, 8518, 11059, 26471, 6948, 55602, 9883, 22891, 1969, 3725, 7867, 23657, 29946, 3654, 10057, 7378, 975, 3976, 25873, 26355, 127544, 8851, 55240, 26207, 23169, 51002, 23378, 3552, 5372, 7164, 10437, 2760, 6206, 64787, 4071, 10904, 2872, 3732, 10399, 6768, 7062, 8841, 8812, 79651, 55270, 7039, 23479, 3945, 7135, 2258, 6256, 351, 2149, 9635, 10668, 81566, 91, 650, 2877, 3872, 51768, 7704, 5784, 64061, 6520, 6275, 27165, 896, 3275, 4808, 10458, 54884, 4033, 3006, 30836, 10608, 29927, 3162, 5883
##
## Gene Set: HALLMARK_UV_RESPONSE_UP
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UV_RESPONSE_UP
## Genes: 10482, 6535, 578, 988, 3306, 5437, 211, 7277, 725, 898, 2052, 80273, 3383, 2237, 409, 3726, 1515, 8694, 467, 836, 10125, 7009, 2353, 6890, 1875, 5873, 896, 291, 6697, 1030, 6474, 10439, 3485, 4067, 1212, 10018, 9355, 4792, 4487, 3014, 3164, 2744, 997, 4323, 10494, 11333, 5243, 682, 6415, 3659, 6257, 7037, 10105, 1028, 3134, 8804, 55937, 650, 9392, 9, 51706, 6236, 54107, 3569, 10652, 30, 1181, 27161, 6648, 5504, 388, 5979, 27295, 4072, 3301, 6817, 1119, 1543, 9296, 1036, 226, 23467, 1968, 1267, 2907, 637, 11232, 3572, 8692, 2354, 4245, 1482, 5471, 5045, 6150, 3363, 2920, 116138, 9129, 3337, 1175, 5702, 7263, 10280, 2643, 7832, 1054, 6897, 7389, 10038, 10950, 1742, 1138, 4885, 528, 360, 5334, 9818, 7301, 3162, 6184, 694, 2326, 440, 9188, 3757, 1280, 4128, 7062, 80777, 6782, 8836, 51083, 4916, 5538, 8817, 2288, 10963, 1983, 2026, 2878, 5566, 5580, 10948, 2011, 6539, 8878, 5789, 23542, 1017, 3175, 5984, 760, 6870, 262, 3192, 58525, 885
##
## Gene Set: HALLMARK_UV_RESPONSE_DN
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_UV_RESPONSE_DN
## Genes: 7082, 4781, 7049, 7035, 4325, 4363, 5607, 55109, 5332, 4233, 3667, 5797, 10000, 26037, 9975, 8455, 302, 120, 1027, 6310, 10486, 7799, 23116, 6383, 4088, 6541, 2650, 861, 390, 8613, 2908, 91746, 5468, 23266, 1739, 493, 25836, 5195, 4609, 5922, 2535, 657, 1902, 5578, 4255, 5581, 6256, 4052, 3949, 11030, 773, 5999, 1290, 11099, 5577, 2697, 594, 27109, 5054, 273, 54468, 10370, 1278, 3638, 2534, 22884, 57178, 5376, 50937, 8503, 4853, 8871, 4092, 4131, 11044, 5728, 1859, 140609, 8405, 2152, 2064, 2869, 1843, 7436, 857, 1301, 8476, 8621, 51460, 136, 8553, 1281, 3778, 23345, 3480, 10659, 9112, 2202, 3915, 23469, 22828, 7410, 10401, 92, 8829, 10240, 3491, 1601, 9863, 307, 1277, 29970, 23576, 5159, 546, 8997, 7048, 5737, 27032, 23229, 4790, 11343, 10516, 10611, 1432, 6717, 8821, 3488, 3690, 627, 3397, 6591, 6334, 490, 2274, 3815, 323, 5293, 10395, 4493, 1628, 3037, 5002, 3382
##
## Gene Set: HALLMARK_ANGIOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ANGIOGENESIS
## Genes: 1462, 10631, 11167, 4043, 6781, 4023, 7422, 5196, 7056, 2260, 27242, 894, 1290, 3685, 5104, 3764, 351, 182, 1281, 6696, 8829, 4973, 5154, 5747, 6578, 8993, 7410, 6275, 4487, 7448, 7076, 350, 5553, 3714, 4060, 6372
##
## Gene Set: HALLMARK_HEME_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_HEME_METABOLISM
## Genes: 212, 5498, 2235, 3145, 2994, 210, 6007, 2993, 8991, 645, 2996, 2995, 2038, 6521, 6006, 6005, 6886, 220972, 6710, 7389, 3049, 80344, 114625, 27102, 1371, 4354, 51218, 10098, 23762, 286, 4778, 51327, 6708, 5606, 665, 6583, 1193, 66008, 2729, 3792, 57610, 10107, 222642, 7390, 7504, 6622, 4140, 10422, 759, 760, 682, 2309, 10661, 996, 8850, 26502, 2730, 25793, 3005, 50865, 3045, 11163, 26268, 5886, 84809, 9911, 644, 2623, 55544, 7001, 63891, 9562, 7145, 1510, 2039, 3068, 23039, 23608, 54498, 7029, 4601, 3043, 56180, 51312, 7779, 10058, 6535, 7037, 10171, 7150, 2057, 23112, 23305, 26130, 4259, 55532, 847, 4059, 3050, 2532, 5715, 81689, 10158, 8364, 3386, 55034, 118, 10841, 119, 55589, 669, 1182, 1870, 3029, 80853, 10133, 5909, 1497, 4779, 22936, 6513, 9091, 51274, 2035, 3920, 56674, 2145, 1508, 115201, 9258, 4635, 25897, 7832, 4891, 51094, 440, 54165, 10840, 79269, 51646, 6397, 9958, 8780, 51092, 55810, 6917, 7716, 9663, 5091, 3044, 1039, 896, 54977, 54855, 55030, 571, 2908, 360, 25893, 4005, 8301, 8031, 51573, 6536, 23530, 23365, 5526, 718, 51257, 7351, 8867, 64122, 9429, 23002, 56895, 25901, 8833, 54, 8273, 4329, 9541, 10181, 27429, 3321, 8945, 25796, 80148, 6386, 26020, 140609, 23568, 23052, 8974, 10553, 23657, 23351, 129642, 535, 831, 7299
##
## Gene Set: HALLMARK_COAGULATION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_COAGULATION
## Genes: 2147, 5624, 716, 4323, 2159, 5340, 715, 5054, 710, 717, 2161, 3426, 4313, 718, 2158, 1519, 164656, 4318, 8858, 4312, 629, 649, 7450, 2243, 2160, 7056, 5045, 4320, 2157, 5641, 3249, 1508, 4153, 2165, 7076, 1515, 4317, 2, 4319, 10747, 2266, 731, 5328, 8754, 2934, 824, 5327, 2335, 1512, 4973, 6678, 9104, 732, 3920, 735, 5627, 1191, 2151, 928, 3075, 5550, 4048, 2815, 11072, 1513, 9615, 842, 341, 1397, 11202, 462, 301, 3697, 11098, 2200, 4485, 2152, 8609, 1510, 3690, 726, 1465, 3818, 22921, 7980, 4314, 4224, 2811, 335, 5265, 7018, 553115, 55970, 22933, 1311, 5654, 23764, 4035, 5196, 10404, 4324, 5877, 3273, 733, 344, 5055, 10411, 1369, 3673, 5879, 1803, 9948, 7057, 2534, 5155, 10603, 5175, 4316, 1848, 1361, 6284, 1675, 1638, 7044, 283, 712, 3158, 23479, 5341, 345, 5028, 8237, 7078, 8309, 3172, 6271, 2783, 378
##
## Gene Set: HALLMARK_IL2_STAT5_SIGNALING
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_IL2_STAT5_SIGNALING
## Genes: 8835, 1154, 5292, 3559, 7293, 8651, 3604, 7494, 58528, 3099, 22822, 3560, 1493, 4783, 9308, 22807, 3586, 8784, 9249, 1893, 8728, 6515, 28996, 55509, 8553, 5732, 23258, 80760, 57157, 4616, 8829, 8202, 974, 196, 7133, 10397, 598, 23710, 3976, 7074, 659, 1326, 388, 4609, 6271, 254013, 822, 6484, 5179, 3662, 8530, 79971, 51284, 64375, 115361, 6004, 6696, 3596, 3177, 64332, 3566, 4084, 1437, 2184, 1522, 3682, 4582, 9261, 27242, 4907, 2323, 894, 7185, 253558, 3563, 23191, 596, 10875, 5621, 221143, 80324, 3685, 23413, 28960, 23600, 285172, 5745, 4953, 3480, 5727, 2027, 975, 23764, 2012, 1028, 825, 7850, 23208, 158219, 307, 10538, 5033, 8477, 6510, 3482, 10970, 1233, 960, 5025, 2623, 1316, 10124, 84525, 10888, 3655, 962, 92749, 6403, 152007, 10924, 5359, 5045, 5269, 8600, 2879, 84230, 898, 836, 83699, 51429, 5339, 650, 29851, 214, 4050, 5167, 9173, 4641, 3459, 123, 8809, 79026, 5583, 943, 9144, 130589, 5451, 8320, 4839, 51651, 399, 990, 4643, 3627, 57231, 3664, 3587, 4135, 8743, 200734, 6402, 462, 64866, 6095, 1690, 1435, 2151, 7371, 760, 10410, 7372, 10075, 1291, 5243, 6050, 3394, 2983, 191, 11230, 9446, 57045, 56990, 5325, 333, 8611, 81848, 6335, 126669, 84306, 896, 26018, 23075, 64116, 9910, 7052, 4860, 177, 2118, 942
##
## Gene Set: HALLMARK_BILE_ACID_METABOLISM
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_BILE_ACID_METABOLISM
## Genes: 6342, 5825, 11001, 80270, 3295, 6718, 225, 5189, 1582, 50640, 5264, 10998, 9420, 1593, 55670, 189, 5191, 54677, 51302, 21, 1581, 26061, 51268, 5190, 6647, 8443, 3283, 20, 54363, 9409, 215, 2180, 23417, 64241, 366, 51015, 9971, 5824, 4864, 51170, 23600, 10858, 5194, 3417, 8800, 8630, 2053, 25824, 5827, 8424, 9415, 223, 335, 10133, 373156, 64137, 64577, 4306, 23460, 54884, 3992, 55825, 5193, 847, 27232, 10350, 51703, 83752, 1718, 10351, 5213, 1733, 6256, 2232, 7276, 10661, 2030, 8412, 3932, 92960, 6579, 216, 27284, 8856, 2638, 24, 347734, 9963, 83594, 19, 196743, 5002, 1734, 5947, 9962, 6310, 2730, 4734, 6258, 367, 654, 866, 3991, 114327, 3418, 3422, 9023, 23461, 6820, 8435, 29842, 8431
##
## Gene Set: HALLMARK_PEROXISOME
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PEROXISOME
## Genes: 5825, 10005, 51, 2180, 1891, 10455, 1962, 373156, 3295, 23417, 8800, 54884, 11001, 5194, 5195, 6342, 80270, 8443, 225, 10478, 5828, 30, 51179, 51170, 1384, 8799, 83752, 3417, 51024, 5190, 5244, 6647, 5243, 51015, 7533, 2053, 215, 3155, 51703, 223, 1718, 60481, 390916, 25824, 1503, 3416, 9962, 5830, 8915, 8856, 706, 7555, 4436, 9249, 1733, 291, 5052, 3422, 3265, 9961, 6833, 54982, 847, 2182, 3418, 10057, 6648, 347734, 2224, 213, 3992, 412, 6599, 9270, 6477, 60386, 1022, 6258, 216, 7367, 23705, 866, 2055, 51109, 1487, 3291, 7276, 2071, 6310, 6820, 1382, 1381, 7153, 7356, 2067, 1742, 26986, 2172, 23457, 774, 10512, 9525, 1056, 2100
##
## Gene Set: HALLMARK_ALLOGRAFT_REJECTION
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_ALLOGRAFT_REJECTION
## Genes: 5788, 3593, 7040, 3592, 916, 915, 940, 4067, 3059, 3606, 56253, 3458, 917, 942, 3586, 7334, 8915, 920, 3932, 4690, 717, 3105, 3689, 3117, 912, 941, 3122, 7070, 7096, 3135, 3109, 3574, 3565, 7124, 919, 3558, 3108, 6772, 3662, 5552, 3624, 7098, 7535, 972, 958, 7186, 567, 602, 4050, 3459, 1234, 959, 3111, 11146, 3569, 3133, 914, 6352, 355, 356, 10333, 5196, 7042, 973, 3625, 1991, 6688, 6885, 3600, 1520, 961, 5551, 3594, 3937, 8651, 1029, 6775, 924, 3112, 925, 3383, 6351, 3002, 1435, 3589, 23166, 3559, 114548, 896, 8661, 27240, 3455, 9734, 9607, 50852, 6367, 322, 2533, 3553, 7076, 6223, 3717, 3848, 7453, 3460, 729230, 2069, 4318, 1956, 3603, 5199, 7454, 3683, 3824, 5917, 7097, 894, 3561, 2113, 3702, 9437, 11184, 6363, 5699, 6170, 8669, 6059, 926, 2147, 2000, 9450, 2213, 2634, 5582, 6203, 4528, 3001, 16, 10225, 1445, 3091, 6347, 23308, 4869, 3566, 6356, 4830, 2316, 8477, 43, 8664, 10261, 2149, 3596, 6890, 1615, 3665, 92, 2833, 5579, 4283, 5777, 4689, 7321, 3976, 1230, 4153, 8560, 7163, 207, 8767, 3551, 2650, 9655, 3394, 6891, 8672, 10006, 6354, 3560, 672, 2268, 8807, 11222, 10563, 822, 1984, 6189, 2589, 7903, 6357, 6123, 4065, 6892, 4843, 6133, 586, 3578, 9466, 8444
##
## Gene Set: HALLMARK_SPERMATOGENESIS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_SPERMATOGENESIS
## Genes: 5161, 23617, 7141, 11055, 64180, 2515, 10880, 26330, 7278, 3948, 29118, 5620, 6954, 9063, 56903, 51686, 51533, 4956, 84519, 51087, 1459, 84779, 7288, 132612, 6847, 54514, 4291, 27285, 54558, 5232, 3306, 56, 81570, 7180, 79696, 8852, 8900, 10693, 135138, 83445, 51298, 22824, 10047, 1630, 3305, 2947, 165721, 3598, 814, 23175, 79882, 8161, 5261, 11004, 116832, 6518, 54760, 6790, 8028, 4842, 419, 9133, 4867, 1047, 23139, 2475, 1033, 148066, 3267, 9892, 8624, 55743, 7142, 2146, 3050, 10124, 6558, 673, 7419, 5443, 8100, 8277, 4751, 10254, 3010, 64395, 4543, 5984, 10926, 5576, 7272, 11144, 23397, 5037, 1132, 11073, 6447, 4744, 9053, 699, 5414, 9489, 4889, 7247, 983, 126669, 10038, 7137, 27344, 3416, 11318, 5884, 7091, 1636, 23411, 3361, 6888, 4771, 157807, 254263, 2918, 55342, 116, 246, 4225, 29106, 2672, 83401, 3595, 1761, 2571, 1080, 83700, 9807, 3211
##
## Gene Set: HALLMARK_KRAS_SIGNALING_UP
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_KRAS_SIGNALING_UP
## Genes: 51129, 3673, 10253, 1839, 5950, 3290, 2118, 2745, 1848, 6447, 2119, 3689, 208, 5473, 50486, 2556, 3394, 330, 2254, 131566, 3624, 7035, 10103, 101, 6590, 5593, 4320, 4319, 25907, 7128, 639, 2591, 2113, 4318, 7476, 3486, 6696, 2115, 50856, 894, 7102, 9358, 2012, 81602, 3800, 28951, 10806, 5121, 3080, 8854, 8431, 220, 9949, 6304, 2982, 1437, 347, 163590, 1240, 28959, 25960, 7805, 951, 81617, 1149, 51193, 3553, 2995, 23643, 2324, 10418, 650, 26499, 3481, 9971, 6616, 1636, 5396, 719, 7185, 51311, 3398, 55273, 5329, 10912, 57332, 6324, 58155, 4674, 9590, 5327, 29106, 55107, 8808, 3627, 83734, 79693, 9734, 5178, 7869, 7139, 3976, 629, 685, 23645, 5801, 6364, 383, 56729, 9314, 23531, 80380, 3018, 3237, 10221, 2150, 11199, 27075, 54893, 3075, 7462, 30001, 5649, 3783, 55365, 11184, 5743, 90865, 9935, 3936, 4803, 760, 12, 6004, 1520, 219333, 1363, 8404, 5243, 10083, 1438, 22903, 3561, 23268, 3587, 2069, 51012, 2048, 26272, 54677, 10205, 56172, 84869, 1794, 51704, 9910, 7851, 6801, 6480, 5284, 4013, 5696, 2162, 8829, 6662, 3728, 64123, 11179, 23136, 27344, 2517, 83483, 6868, 23080, 27299, 80201, 9053, 3575, 5936, 669, 2022, 9945, 5328, 2791, 79810, 4214, 867, 7852, 51199, 10320, 55339, 4613, 2207, 5175, 54462, 9892, 7813, 7133, 10457, 7166
##
## Gene Set: HALLMARK_KRAS_SIGNALING_DN
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_KRAS_SIGNALING_DN
## Genes: 1014, 6712, 2261, 4842, 5158, 54847, 4908, 6336, 50832, 1838, 3352, 23031, 6531, 9073, 7051, 29930, 7068, 29799, 6262, 2668, 57118, 258, 3955, 51156, 242, 797, 55277, 6707, 525, 1906, 105375355, 2593, 5625, 6261, 2842, 55315, 1907, 55890, 727, 79696, 10913, 3779, 54855, 10734, 3851, 79085, 10022, 2811, 8085, 64137, 4625, 676, 5737, 3780, 6414, 10964, 5626, 3963, 658, 5164, 1630, 6620, 1280, 7367, 5540, 65989, 51384, 11254, 26548, 6559, 51087, 1158, 1360, 79917, 398, 51806, 3848, 4524, 8647, 9499, 1952, 5650, 55258, 1146, 4929, 959, 3860, 2813, 50489, 1237, 7704, 5071, 1358, 4210, 8900, 10991, 11202, 51302, 3785, 7781, 9435, 3699, 1950, 4439, 56154, 1208, 57089, 9746, 1585, 10686, 3291, 56997, 6927, 27006, 29842, 5020, 3750, 55506, 83714, 8786, 22849, 7038, 5795, 55190, 2488, 3425, 7137, 9328, 7032, 6754, 51226, 5133, 9194, 9992, 54842, 55220, 1271, 3567, 4868, 7356, 29903, 5077, 7441, 7252, 778, 57016, 9127, 3866, 5078, 7832, 2827, 2895, 8115, 5324, 5317, 8471, 3593, 2044, 6663, 8303, 786, 56848, 3485, 10753, 83439, 7042, 23676, 27076, 5409, 11346, 4599, 3458, 2649, 70, 91543, 152, 580, 3351, 8823, 57451, 54901, 6474, 6446, 26150, 6498, 58157, 140460, 51168, 6528, 3852, 7771, 7021, 55610, 941, 495, 10777, 5055, 3195, 80303, 5030
##
## Gene Set: HALLMARK_PANCREAS_BETA_CELLS
## Description: http://www.gsea-msigdb.org/gsea/msigdb/human/geneset/HALLMARK_PANCREAS_BETA_CELLS
## Genes: 5080, 4760, 3670, 4821, 5122, 4825, 6514, 23478, 1641, 28972, 3170, 2645, 9935, 3630, 3651, 6833, 3375, 6726, 50674, 2308, 10000, 2641, 1803, 5078, 57586, 10590, 6927, 6812, 1113, 7421, 5126, 3642, 6750, 26610, 58477, 5063, 57818, 5313, 4005, 6727