Healthy_cytokine Vs Healthy_Treatment
aungmyatphyo
2023-05-11
Required Package
library(dplyr)
library(biomaRt)
library(tximport)
library(rhdf5)
library(gplots)
library(org.Hs.eg.db)
library(DESeq2)
library(DT)
library(apeglm)
library(RColorBrewer)
library(IHW)
library(PCAtools)
library(pheatmap)
library(clusterProfiler)
library(EnhancedVolcano)
library(ComplexHeatmap)
library(clusterProfiler)
library(circlize)
library(fgsea)
library(tidyverse)
library(ggpubr)
library(vsn)
library(hexbin)
library(ggnewscale)
library(pathview)
library(ReactomePA)setwd("~/Downloads")Directory
# path where your extracted the tar.gz folder to.
# strip the trailing '/'
quant_dir <- "/Users/aungphyo/Downloads/Kallisto"
list.files(quant_dir)## [1] "D_CON1" "D_CON2"
## [3] "D_CON3" "D_TREAT1"
## [5] "D_TREAT2" "D_TREAT3"
## [7] "GRCh38.idx" "H_CON1"
## [9] "H_CON2" "H_CON3"
## [11] "H_CYTKN1" "H_CYTKN2"
## [13] "H_CYTKN3" "H_TREAT1"
## [15] "H_TREAT2" "H_TREAT3"
## [17] "Homo_sapiens.GRCh38.cdna.all.fa.gz" "samples.csv"
## [19] "samples.txt"Metadata
samples <- read.csv(paste0(quant_dir, "/samples.csv"), header=T, row.names = "row", stringsAsFactors = T)
samples## X condition replicate
## D_CON1 NA disease_control 1
## D_CON2 NA disease_control 2
## D_CON3 NA disease_control 3
## D_TREAT1 NA disease_treatment 1
## D_TREAT2 NA disease_treatment 2
## D_TREAT3 NA disease_treatment 3
## H_CON1 NA healthy_control 1
## H_CON2 NA healthy_control 2
## H_CON3 NA healthy_control 3
## H_CYTKN1 NA healthy_cytokine 1
## H_CYTKN2 NA healthy_cytokine 2
## H_CYTKN3 NA healthy_cytokine 3
## H_TREAT1 NA healthy_treatment 1
## H_TREAT2 NA healthy_treatment 2
## H_TREAT3 NA healthy_treatment 3Convert numeric to factor
samples$replicate <- factor(samples$replicate)
# check its ok:
sapply(samples, is.factor)## X condition replicate
## FALSE TRUE TRUEStage Kallisto Files
files <- file.path(quant_dir, rownames(samples), "abundance.h5")
names(files) <- paste0(rownames(samples))
files## D_CON1
## "/Users/aungphyo/Downloads/Kallisto/D_CON1/abundance.h5"
## D_CON2
## "/Users/aungphyo/Downloads/Kallisto/D_CON2/abundance.h5"
## D_CON3
## "/Users/aungphyo/Downloads/Kallisto/D_CON3/abundance.h5"
## D_TREAT1
## "/Users/aungphyo/Downloads/Kallisto/D_TREAT1/abundance.h5"
## D_TREAT2
## "/Users/aungphyo/Downloads/Kallisto/D_TREAT2/abundance.h5"
## D_TREAT3
## "/Users/aungphyo/Downloads/Kallisto/D_TREAT3/abundance.h5"
## H_CON1
## "/Users/aungphyo/Downloads/Kallisto/H_CON1/abundance.h5"
## H_CON2
## "/Users/aungphyo/Downloads/Kallisto/H_CON2/abundance.h5"
## H_CON3
## "/Users/aungphyo/Downloads/Kallisto/H_CON3/abundance.h5"
## H_CYTKN1
## "/Users/aungphyo/Downloads/Kallisto/H_CYTKN1/abundance.h5"
## H_CYTKN2
## "/Users/aungphyo/Downloads/Kallisto/H_CYTKN2/abundance.h5"
## H_CYTKN3
## "/Users/aungphyo/Downloads/Kallisto/H_CYTKN3/abundance.h5"
## H_TREAT1
## "/Users/aungphyo/Downloads/Kallisto/H_TREAT1/abundance.h5"
## H_TREAT2
## "/Users/aungphyo/Downloads/Kallisto/H_TREAT2/abundance.h5"
## H_TREAT3
## "/Users/aungphyo/Downloads/Kallisto/H_TREAT3/abundance.h5"BiomaRT Ensembl
mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")Transcript to gene
## show how to identify attribute type
# $ head /data/github/quant/ctrl_1/abundance.tsv
## show how to query mart
listAttributes(mart)## name
## 1 ensembl_gene_id
## 2 ensembl_gene_id_version
## 3 ensembl_transcript_id
## 4 ensembl_transcript_id_version
## 5 ensembl_peptide_id
## 6 ensembl_peptide_id_version
## 7 ensembl_exon_id
## 8 description
## 9 chromosome_name
## 10 start_position
## 11 end_position
## 12 strand
## 13 band
## 14 transcript_start
## 15 transcript_end
## 16 transcription_start_site
## 17 transcript_length
## 18 transcript_tsl
## 19 transcript_gencode_basic
## 20 transcript_appris
## 21 transcript_is_canonical
## 22 transcript_mane_select
## 23 transcript_mane_plus_clinical
## 24 external_gene_name
## 25 external_gene_source
## 26 external_transcript_name
## 27 external_transcript_source_name
## 28 transcript_count
## 29 percentage_gene_gc_content
## 30 gene_biotype
## 31 transcript_biotype
## 32 source
## 33 transcript_source
## 34 version
## 35 transcript_version
## 36 peptide_version
## 37 external_synonym
## 38 phenotype_description
## 39 source_name
## 40 study_external_id
## 41 strain_name
## 42 strain_gender
## 43 p_value
## 44 go_id
## 45 name_1006
## 46 definition_1006
## 47 go_linkage_type
## 48 namespace_1003
## 49 goslim_goa_accession
## 50 goslim_goa_description
## 51 biogrid
## 52 ccds
## 53 chembl
## 54 dbass3_name
## 55 dbass3_id
## 56 dbass5_name
## 57 dbass5_id
## 58 entrezgene_trans_name
## 59 embl
## 60 arrayexpress
## 61 genecards
## 62 hgnc_id
## 63 hgnc_symbol
## 64 hpa_accession
## 65 hpa_id
## 66 protein_id
## 67 ens_lrg_gene
## 68 ens_lrg_transcript
## 69 merops
## 70 mim_gene_description
## 71 mim_gene_accession
## 72 mim_morbid_description
## 73 mim_morbid_accession
## 74 mirbase_accession
## 75 mirbase_id
## 76 mirbase_trans_name
## 77 entrezgene_description
## 78 entrezgene_accession
## 79 entrezgene_id
## 80 pdb
## 81 reactome
## 82 reactome_gene
## 83 reactome_transcript
## 84 refseq_mrna
## 85 refseq_mrna_predicted
## 86 refseq_ncrna
## 87 refseq_ncrna_predicted
## 88 refseq_peptide
## 89 refseq_peptide_predicted
## 90 rfam
## 91 rfam_trans_name
## 92 rnacentral
## 93 hgnc_trans_name
## 94 ucsc
## 95 uniparc
## 96 uniprot_gn_symbol
## 97 uniprot_gn_id
## 98 uniprot_isoform
## 99 uniprotswissprot
## 100 uniprotsptrembl
## 101 wikigene_description
## 102 wikigene_name
## 103 wikigene_id
## 104 affy_hc_g110
## 105 affy_hg_focus
## 106 affy_hg_u133a_2
## 107 affy_hg_u133b
## 108 affy_hg_u133_plus_2
## 109 affy_hg_u95a
## 110 affy_hg_u95av2
## 111 affy_hg_u95b
## 112 affy_hg_u95c
## 113 affy_hg_u95d
## 114 affy_hg_u95e
## 115 affy_hta_2_0
## 116 affy_ht_hg_u133_plus_pm
## 117 affy_huex_1_0_st_v2
## 118 affy_hugenefl
## 119 affy_hugene_1_0_st_v1
## 120 affy_hugene_2_0_st_v1
## 121 affy_hugene_2_1_st_v1
## 122 affy_primeview
## 123 affy_u133_x3p
## 124 agilent_cgh_44b
## 125 agilent_gpl19072
## 126 agilent_gpl26966
## 127 agilent_gpl6848
## 128 agilent_sureprint_g3_ge_8x60k
## 129 agilent_sureprint_g3_ge_8x60k_v2
## 130 agilent_wholegenome
## 131 agilent_wholegenome_4x44k_v1
## 132 agilent_wholegenome_4x44k_v2
## 133 codelink_codelink
## 134 illumina_humanref_8_v3
## 135 illumina_humanwg_6_v3
## 136 phalanx_onearray
## 137 cdd
## 138 cdd_start
## 139 cdd_end
## 140 gene3d
## 141 gene3d_start
## 142 gene3d_end
## 143 hamap
## 144 hamap_start
## 145 hamap_end
## 146 hmmpanther
## 147 hmmpanther_start
## 148 hmmpanther_end
## 149 pfam
## 150 pfam_start
## 151 pfam_end
## 152 pirsf
## 153 pirsf_start
## 154 pirsf_end
## 155 prints
## 156 prints_start
## 157 prints_end
## 158 scanprosite
## 159 scanprosite_start
## 160 scanprosite_end
## 161 pfscan
## 162 pfscan_start
## 163 pfscan_end
## 164 sfld
## 165 sfld_start
## 166 sfld_end
## 167 smart
## 168 smart_start
## 169 smart_end
## 170 superfamily
## 171 superfamily_start
## 172 superfamily_end
## 173 tigrfam
## 174 tigrfam_start
## 175 tigrfam_end
## 176 interpro
## 177 interpro_short_description
## 178 interpro_description
## 179 interpro_start
## 180 interpro_end
## 181 alphafold_import
## 182 alphafold_import_start
## 183 alphafold_import_end
## 184 mobidblite
## 185 mobidblite_start
## 186 mobidblite_end
## 187 ncoils
## 188 ncoils_start
## 189 ncoils_end
## 190 seg
## 191 seg_start
## 192 seg_end
## 193 sifts_import
## 194 sifts_import_start
## 195 sifts_import_end
## 196 signalp
## 197 signalp_start
## 198 signalp_end
## 199 tmhmm
## 200 tmhmm_start
## 201 tmhmm_end
## 202 ensembl_gene_id
## 203 ensembl_gene_id_version
## 204 version
## 205 ensembl_transcript_id
## 206 ensembl_transcript_id_version
## 207 transcript_version
## 208 ensembl_peptide_id
## 209 ensembl_peptide_id_version
## 210 peptide_version
## 211 chromosome_name
## 212 start_position
## 213 end_position
## 214 transcript_start
## 215 transcript_end
## 216 transcription_start_site
## 217 transcript_length
## 218 strand
## 219 external_gene_name
## 220 external_gene_source
## 221 5_utr_start
## 222 5_utr_end
## 223 3_utr_start
## 224 3_utr_end
## 225 cds_length
## 226 transcript_count
## 227 description
## 228 gene_biotype
## 229 exon_chrom_start
## 230 exon_chrom_end
## 231 is_constitutive
## 232 rank
## 233 phase
## 234 end_phase
## 235 cdna_coding_start
## 236 cdna_coding_end
## 237 genomic_coding_start
## 238 genomic_coding_end
## 239 ensembl_exon_id
## 240 cds_start
## 241 cds_end
## 242 ensembl_gene_id
## 243 ensembl_gene_id_version
## 244 version
## 245 ensembl_transcript_id
## 246 ensembl_transcript_id_version
## 247 transcript_version
## 248 ensembl_peptide_id
## 249 ensembl_peptide_id_version
## 250 peptide_version
## 251 chromosome_name
## 252 start_position
## 253 end_position
## 254 strand
## 255 band
## 256 external_gene_name
## 257 external_gene_source
## 258 transcript_count
## 259 percentage_gene_gc_content
## 260 description
## 261 cabingdonii_homolog_ensembl_gene
## 262 cabingdonii_homolog_associated_gene_name
## 263 cabingdonii_homolog_ensembl_peptide
## 264 cabingdonii_homolog_chromosome
## 265 cabingdonii_homolog_chrom_start
## 266 cabingdonii_homolog_chrom_end
## 267 cabingdonii_homolog_canonical_transcript_protein
## 268 cabingdonii_homolog_subtype
## 269 cabingdonii_homolog_orthology_type
## 270 cabingdonii_homolog_perc_id
## 271 cabingdonii_homolog_perc_id_r1
## 272 cabingdonii_homolog_goc_score
## 273 cabingdonii_homolog_wga_coverage
## 274 cabingdonii_homolog_orthology_confidence
## 275 scaustralis_homolog_ensembl_gene
## 276 scaustralis_homolog_associated_gene_name
## 277 scaustralis_homolog_ensembl_peptide
## 278 scaustralis_homolog_chromosome
## 279 scaustralis_homolog_chrom_start
## 280 scaustralis_homolog_chrom_end
## 281 scaustralis_homolog_canonical_transcript_protein
## 282 scaustralis_homolog_subtype
## 283 scaustralis_homolog_orthology_type
## 284 scaustralis_homolog_perc_id
## 285 scaustralis_homolog_perc_id_r1
## 286 scaustralis_homolog_goc_score
## 287 scaustralis_homolog_wga_coverage
## 288 scaustralis_homolog_orthology_confidence
## 289 mspretus_homolog_ensembl_gene
## 290 mspretus_homolog_associated_gene_name
## 291 mspretus_homolog_ensembl_peptide
## 292 mspretus_homolog_chromosome
## 293 mspretus_homolog_chrom_start
## 294 mspretus_homolog_chrom_end
## 295 mspretus_homolog_canonical_transcript_protein
## 296 mspretus_homolog_subtype
## 297 mspretus_homolog_orthology_type
## 298 mspretus_homolog_perc_id
## 299 mspretus_homolog_perc_id_r1
## 300 mspretus_homolog_goc_score
## 301 mspretus_homolog_wga_coverage
## 302 mspretus_homolog_orthology_confidence
## 303 vpacos_homolog_ensembl_gene
## 304 vpacos_homolog_associated_gene_name
## 305 vpacos_homolog_ensembl_peptide
## 306 vpacos_homolog_chromosome
## 307 vpacos_homolog_chrom_start
## 308 vpacos_homolog_chrom_end
## 309 vpacos_homolog_canonical_transcript_protein
## 310 vpacos_homolog_subtype
## 311 vpacos_homolog_orthology_type
## 312 vpacos_homolog_perc_id
## 313 vpacos_homolog_perc_id_r1
## 314 vpacos_homolog_goc_score
## 315 vpacos_homolog_wga_coverage
## 316 vpacos_homolog_orthology_confidence
## 317 mmmarmota_homolog_ensembl_gene
## 318 mmmarmota_homolog_associated_gene_name
## 319 mmmarmota_homolog_ensembl_peptide
## 320 mmmarmota_homolog_chromosome
## 321 mmmarmota_homolog_chrom_start
## 322 mmmarmota_homolog_chrom_end
## 323 mmmarmota_homolog_canonical_transcript_protein
## 324 mmmarmota_homolog_subtype
## 325 mmmarmota_homolog_orthology_type
## 326 mmmarmota_homolog_perc_id
## 327 mmmarmota_homolog_perc_id_r1
## 328 mmmarmota_homolog_goc_score
## 329 mmmarmota_homolog_wga_coverage
## 330 mmmarmota_homolog_orthology_confidence
## 331 pformosa_homolog_ensembl_gene
## 332 pformosa_homolog_associated_gene_name
## 333 pformosa_homolog_ensembl_peptide
## 334 pformosa_homolog_chromosome
## 335 pformosa_homolog_chrom_start
## 336 pformosa_homolog_chrom_end
## 337 pformosa_homolog_canonical_transcript_protein
## 338 pformosa_homolog_subtype
## 339 pformosa_homolog_orthology_type
## 340 pformosa_homolog_perc_id
## 341 pformosa_homolog_perc_id_r1
## 342 pformosa_homolog_goc_score
## 343 pformosa_homolog_wga_coverage
## 344 pformosa_homolog_orthology_confidence
## 345 bbbison_homolog_ensembl_gene
## 346 bbbison_homolog_associated_gene_name
## 347 bbbison_homolog_ensembl_peptide
## 348 bbbison_homolog_chromosome
## 349 bbbison_homolog_chrom_start
## 350 bbbison_homolog_chrom_end
## 351 bbbison_homolog_canonical_transcript_protein
## 352 bbbison_homolog_subtype
## 353 bbbison_homolog_orthology_type
## 354 bbbison_homolog_perc_id
## 355 bbbison_homolog_perc_id_r1
## 356 bbbison_homolog_goc_score
## 357 bbbison_homolog_wga_coverage
## 358 bbbison_homolog_orthology_confidence
## 359 uamericanus_homolog_ensembl_gene
## 360 uamericanus_homolog_associated_gene_name
## 361 uamericanus_homolog_ensembl_peptide
## 362 uamericanus_homolog_chromosome
## 363 uamericanus_homolog_chrom_start
## 364 uamericanus_homolog_chrom_end
## 365 uamericanus_homolog_canonical_transcript_protein
## 366 uamericanus_homolog_subtype
## 367 uamericanus_homolog_orthology_type
## 368 uamericanus_homolog_perc_id
## 369 uamericanus_homolog_perc_id_r1
## 370 uamericanus_homolog_goc_score
## 371 uamericanus_homolog_wga_coverage
## 372 uamericanus_homolog_orthology_confidence
## 373 nvison_homolog_ensembl_gene
## 374 nvison_homolog_associated_gene_name
## 375 nvison_homolog_ensembl_peptide
## 376 nvison_homolog_chromosome
## 377 nvison_homolog_chrom_start
## 378 nvison_homolog_chrom_end
## 379 nvison_homolog_canonical_transcript_protein
## 380 nvison_homolog_subtype
## 381 nvison_homolog_orthology_type
## 382 nvison_homolog_perc_id
## 383 nvison_homolog_perc_id_r1
## 384 nvison_homolog_goc_score
## 385 nvison_homolog_wga_coverage
## 386 nvison_homolog_orthology_confidence
## 387 cdromedarius_homolog_ensembl_gene
## 388 cdromedarius_homolog_associated_gene_name
## 389 cdromedarius_homolog_ensembl_peptide
## 390 cdromedarius_homolog_chromosome
## 391 cdromedarius_homolog_chrom_start
## 392 cdromedarius_homolog_chrom_end
## 393 cdromedarius_homolog_canonical_transcript_protein
## 394 cdromedarius_homolog_subtype
## 395 cdromedarius_homolog_orthology_type
## 396 cdromedarius_homolog_perc_id
## 397 cdromedarius_homolog_perc_id_r1
## 398 cdromedarius_homolog_goc_score
## 399 cdromedarius_homolog_wga_coverage
## 400 cdromedarius_homolog_orthology_confidence
## 401 uparryii_homolog_ensembl_gene
## 402 uparryii_homolog_associated_gene_name
## 403 uparryii_homolog_ensembl_peptide
## 404 uparryii_homolog_chromosome
## 405 uparryii_homolog_chrom_start
## 406 uparryii_homolog_chrom_end
## 407 uparryii_homolog_canonical_transcript_protein
## 408 uparryii_homolog_subtype
## 409 uparryii_homolog_orthology_type
## 410 uparryii_homolog_perc_id
## 411 uparryii_homolog_perc_id_r1
## 412 uparryii_homolog_goc_score
## 413 uparryii_homolog_wga_coverage
## 414 uparryii_homolog_orthology_confidence
## 415 smerianae_homolog_ensembl_gene
## 416 smerianae_homolog_associated_gene_name
## 417 smerianae_homolog_ensembl_peptide
## 418 smerianae_homolog_chromosome
## 419 smerianae_homolog_chrom_start
## 420 smerianae_homolog_chrom_end
## 421 smerianae_homolog_canonical_transcript_protein
## 422 smerianae_homolog_subtype
## 423 smerianae_homolog_orthology_type
## 424 smerianae_homolog_perc_id
## 425 smerianae_homolog_perc_id_r1
## 426 smerianae_homolog_goc_score
## 427 smerianae_homolog_wga_coverage
## 428 smerianae_homolog_orthology_confidence
## 429 dnovemcinctus_homolog_ensembl_gene
## 430 dnovemcinctus_homolog_associated_gene_name
## 431 dnovemcinctus_homolog_ensembl_peptide
## 432 dnovemcinctus_homolog_chromosome
## 433 dnovemcinctus_homolog_chrom_start
## 434 dnovemcinctus_homolog_chrom_end
## 435 dnovemcinctus_homolog_canonical_transcript_protein
## 436 dnovemcinctus_homolog_subtype
## 437 dnovemcinctus_homolog_orthology_type
## 438 dnovemcinctus_homolog_perc_id
## 439 dnovemcinctus_homolog_perc_id_r1
## 440 dnovemcinctus_homolog_goc_score
## 441 dnovemcinctus_homolog_wga_coverage
## 442 dnovemcinctus_homolog_orthology_confidence
## 443 sformosus_homolog_ensembl_gene
## 444 sformosus_homolog_associated_gene_name
## 445 sformosus_homolog_ensembl_peptide
## 446 sformosus_homolog_chromosome
## 447 sformosus_homolog_chrom_start
## 448 sformosus_homolog_chrom_end
## 449 sformosus_homolog_canonical_transcript_protein
## 450 sformosus_homolog_subtype
## 451 sformosus_homolog_orthology_type
## 452 sformosus_homolog_perc_id
## 453 sformosus_homolog_perc_id_r1
## 454 sformosus_homolog_goc_score
## 455 sformosus_homolog_wga_coverage
## 456 sformosus_homolog_orthology_confidence
## 457 gmorhua_homolog_ensembl_gene
## 458 gmorhua_homolog_associated_gene_name
## 459 gmorhua_homolog_ensembl_peptide
## 460 gmorhua_homolog_chromosome
## 461 gmorhua_homolog_chrom_start
## 462 gmorhua_homolog_chrom_end
## 463 gmorhua_homolog_canonical_transcript_protein
## 464 gmorhua_homolog_subtype
## 465 gmorhua_homolog_orthology_type
## 466 gmorhua_homolog_perc_id
## 467 gmorhua_homolog_perc_id_r1
## 468 gmorhua_homolog_goc_score
## 469 gmorhua_homolog_orthology_confidence
## 470 charengus_homolog_ensembl_gene
## 471 charengus_homolog_associated_gene_name
## 472 charengus_homolog_ensembl_peptide
## 473 charengus_homolog_chromosome
## 474 charengus_homolog_chrom_start
## 475 charengus_homolog_chrom_end
## 476 charengus_homolog_canonical_transcript_protein
## 477 charengus_homolog_subtype
## 478 charengus_homolog_orthology_type
## 479 charengus_homolog_perc_id
## 480 charengus_homolog_perc_id_r1
## 481 charengus_homolog_goc_score
## 482 charengus_homolog_wga_coverage
## 483 charengus_homolog_orthology_confidence
## 484 ssalar_homolog_ensembl_gene
## 485 ssalar_homolog_associated_gene_name
## 486 ssalar_homolog_ensembl_peptide
## 487 ssalar_homolog_chromosome
## 488 ssalar_homolog_chrom_start
## 489 ssalar_homolog_chrom_end
## 490 ssalar_homolog_canonical_transcript_protein
## 491 ssalar_homolog_subtype
## 492 ssalar_homolog_orthology_type
## 493 ssalar_homolog_perc_id
## 494 ssalar_homolog_perc_id_r1
## 495 ssalar_homolog_goc_score
## 496 ssalar_homolog_orthology_confidence
## 497 cporosus_homolog_ensembl_gene
## 498 cporosus_homolog_associated_gene_name
## 499 cporosus_homolog_ensembl_peptide
## 500 cporosus_homolog_chromosome
## 501 cporosus_homolog_chrom_start
## 502 cporosus_homolog_chrom_end
## 503 cporosus_homolog_canonical_transcript_protein
## 504 cporosus_homolog_subtype
## 505 cporosus_homolog_orthology_type
## 506 cporosus_homolog_perc_id
## 507 cporosus_homolog_perc_id_r1
## 508 cporosus_homolog_goc_score
## 509 cporosus_homolog_wga_coverage
## 510 cporosus_homolog_orthology_confidence
## 511 lbergylta_homolog_ensembl_gene
## 512 lbergylta_homolog_associated_gene_name
## 513 lbergylta_homolog_ensembl_peptide
## 514 lbergylta_homolog_chromosome
## 515 lbergylta_homolog_chrom_start
## 516 lbergylta_homolog_chrom_end
## 517 lbergylta_homolog_canonical_transcript_protein
## 518 lbergylta_homolog_subtype
## 519 lbergylta_homolog_orthology_type
## 520 lbergylta_homolog_perc_id
## 521 lbergylta_homolog_perc_id_r1
## 522 lbergylta_homolog_goc_score
## 523 lbergylta_homolog_wga_coverage
## 524 lbergylta_homolog_orthology_confidence
## 525 lcalcarifer_homolog_ensembl_gene
## 526 lcalcarifer_homolog_associated_gene_name
## 527 lcalcarifer_homolog_ensembl_peptide
## 528 lcalcarifer_homolog_chromosome
## 529 lcalcarifer_homolog_chrom_start
## 530 lcalcarifer_homolog_chrom_end
## 531 lcalcarifer_homolog_canonical_transcript_protein
## 532 lcalcarifer_homolog_subtype
## 533 lcalcarifer_homolog_orthology_type
## 534 lcalcarifer_homolog_perc_id
## 535 lcalcarifer_homolog_perc_id_r1
## 536 lcalcarifer_homolog_goc_score
## 537 lcalcarifer_homolog_wga_coverage
## 538 lcalcarifer_homolog_orthology_confidence
## 539 dleucas_homolog_ensembl_gene
## 540 dleucas_homolog_associated_gene_name
## 541 dleucas_homolog_ensembl_peptide
## 542 dleucas_homolog_chromosome
## 543 dleucas_homolog_chrom_start
## 544 dleucas_homolog_chrom_end
## 545 dleucas_homolog_canonical_transcript_protein
## 546 dleucas_homolog_subtype
## 547 dleucas_homolog_orthology_type
## 548 dleucas_homolog_perc_id
## 549 dleucas_homolog_perc_id_r1
## 550 dleucas_homolog_goc_score
## 551 dleucas_homolog_wga_coverage
## 552 dleucas_homolog_orthology_confidence
## 553 spartitus_homolog_ensembl_gene
## 554 spartitus_homolog_associated_gene_name
## 555 spartitus_homolog_ensembl_peptide
## 556 spartitus_homolog_chromosome
## 557 spartitus_homolog_chrom_start
## 558 spartitus_homolog_chrom_end
## 559 spartitus_homolog_canonical_transcript_protein
## 560 spartitus_homolog_subtype
## 561 spartitus_homolog_orthology_type
## 562 spartitus_homolog_perc_id
## 563 spartitus_homolog_perc_id_r1
## 564 spartitus_homolog_goc_score
## 565 spartitus_homolog_wga_coverage
## 566 spartitus_homolog_orthology_confidence
## 567 rbieti_homolog_ensembl_gene
## 568 rbieti_homolog_associated_gene_name
## 569 rbieti_homolog_ensembl_peptide
## 570 rbieti_homolog_chromosome
## 571 rbieti_homolog_chrom_start
## 572 rbieti_homolog_chrom_end
## 573 rbieti_homolog_canonical_transcript_protein
## 574 rbieti_homolog_subtype
## 575 rbieti_homolog_orthology_type
## 576 rbieti_homolog_perc_id
## 577 rbieti_homolog_perc_id_r1
## 578 rbieti_homolog_goc_score
## 579 rbieti_homolog_wga_coverage
## 580 rbieti_homolog_orthology_confidence
## 581 bmusculus_homolog_ensembl_gene
## 582 bmusculus_homolog_associated_gene_name
## 583 bmusculus_homolog_ensembl_peptide
## 584 bmusculus_homolog_chromosome
## 585 bmusculus_homolog_chrom_start
## 586 bmusculus_homolog_chrom_end
## 587 bmusculus_homolog_canonical_transcript_protein
## 588 bmusculus_homolog_subtype
## 589 bmusculus_homolog_orthology_type
## 590 bmusculus_homolog_perc_id
## 591 bmusculus_homolog_perc_id_r1
## 592 bmusculus_homolog_goc_score
## 593 bmusculus_homolog_wga_coverage
## 594 bmusculus_homolog_orthology_confidence
## 595 llaticaudata_homolog_ensembl_gene
## 596 llaticaudata_homolog_associated_gene_name
## 597 llaticaudata_homolog_ensembl_peptide
## 598 llaticaudata_homolog_chromosome
## 599 llaticaudata_homolog_chrom_start
## 600 llaticaudata_homolog_chrom_end
## 601 llaticaudata_homolog_canonical_transcript_protein
## 602 llaticaudata_homolog_subtype
## 603 llaticaudata_homolog_orthology_type
## 604 llaticaudata_homolog_perc_id
## 605 llaticaudata_homolog_perc_id_r1
## 606 llaticaudata_homolog_goc_score
## 607 llaticaudata_homolog_wga_coverage
## 608 llaticaudata_homolog_orthology_confidence
## 609 sbboliviensis_homolog_ensembl_gene
## 610 sbboliviensis_homolog_associated_gene_name
## 611 sbboliviensis_homolog_ensembl_peptide
## 612 sbboliviensis_homolog_chromosome
## 613 sbboliviensis_homolog_chrom_start
## 614 sbboliviensis_homolog_chrom_end
## 615 sbboliviensis_homolog_canonical_transcript_protein
## 616 sbboliviensis_homolog_subtype
## 617 sbboliviensis_homolog_orthology_type
## 618 sbboliviensis_homolog_perc_id
## 619 sbboliviensis_homolog_perc_id_r1
## 620 sbboliviensis_homolog_goc_score
## 621 sbboliviensis_homolog_wga_coverage
## 622 sbboliviensis_homolog_orthology_confidence
## 623 ppaniscus_homolog_ensembl_gene
## 624 ppaniscus_homolog_associated_gene_name
## 625 ppaniscus_homolog_ensembl_peptide
## 626 ppaniscus_homolog_chromosome
## 627 ppaniscus_homolog_chrom_start
## 628 ppaniscus_homolog_chrom_end
## 629 ppaniscus_homolog_canonical_transcript_protein
## 630 ppaniscus_homolog_subtype
## 631 ppaniscus_homolog_orthology_type
## 632 ppaniscus_homolog_perc_id
## 633 ppaniscus_homolog_perc_id_r1
## 634 ppaniscus_homolog_goc_score
## 635 ppaniscus_homolog_wga_coverage
## 636 ppaniscus_homolog_orthology_confidence
## 637 strutta_homolog_ensembl_gene
## 638 strutta_homolog_associated_gene_name
## 639 strutta_homolog_ensembl_peptide
## 640 strutta_homolog_chromosome
## 641 strutta_homolog_chrom_start
## 642 strutta_homolog_chrom_end
## 643 strutta_homolog_canonical_transcript_protein
## 644 strutta_homolog_subtype
## 645 strutta_homolog_orthology_type
## 646 strutta_homolog_perc_id
## 647 strutta_homolog_perc_id_r1
## 648 strutta_homolog_goc_score
## 649 strutta_homolog_wga_coverage
## 650 strutta_homolog_orthology_confidence
## 651 hburtoni_homolog_ensembl_gene
## 652 hburtoni_homolog_associated_gene_name
## 653 hburtoni_homolog_ensembl_peptide
## 654 hburtoni_homolog_chromosome
## 655 hburtoni_homolog_chrom_start
## 656 hburtoni_homolog_chrom_end
## 657 hburtoni_homolog_canonical_transcript_protein
## 658 hburtoni_homolog_subtype
## 659 hburtoni_homolog_orthology_type
## 660 hburtoni_homolog_perc_id
## 661 hburtoni_homolog_perc_id_r1
## 662 hburtoni_homolog_goc_score
## 663 hburtoni_homolog_wga_coverage
## 664 hburtoni_homolog_orthology_confidence
## 665 ogarnettii_homolog_ensembl_gene
## 666 ogarnettii_homolog_associated_gene_name
## 667 ogarnettii_homolog_ensembl_peptide
## 668 ogarnettii_homolog_chromosome
## 669 ogarnettii_homolog_chrom_start
## 670 ogarnettii_homolog_chrom_end
## 671 ogarnettii_homolog_canonical_transcript_protein
## 672 ogarnettii_homolog_subtype
## 673 ogarnettii_homolog_orthology_type
## 674 ogarnettii_homolog_perc_id
## 675 ogarnettii_homolog_perc_id_r1
## 676 ogarnettii_homolog_goc_score
## 677 ogarnettii_homolog_wga_coverage
## 678 ogarnettii_homolog_orthology_confidence
## 679 cintestinalis_homolog_ensembl_gene
## 680 cintestinalis_homolog_associated_gene_name
## 681 cintestinalis_homolog_ensembl_peptide
## 682 cintestinalis_homolog_chromosome
## 683 cintestinalis_homolog_chrom_start
## 684 cintestinalis_homolog_chrom_end
## 685 cintestinalis_homolog_canonical_transcript_protein
## 686 cintestinalis_homolog_subtype
## 687 cintestinalis_homolog_orthology_type
## 688 cintestinalis_homolog_perc_id
## 689 cintestinalis_homolog_perc_id_r1
## 690 cintestinalis_homolog_wga_coverage
## 691 cintestinalis_homolog_orthology_confidence
## 692 csavignyi_homolog_ensembl_gene
## 693 csavignyi_homolog_associated_gene_name
## 694 csavignyi_homolog_ensembl_peptide
## 695 csavignyi_homolog_chromosome
## 696 csavignyi_homolog_chrom_start
## 697 csavignyi_homolog_chrom_end
## 698 csavignyi_homolog_canonical_transcript_protein
## 699 csavignyi_homolog_subtype
## 700 csavignyi_homolog_orthology_type
## 701 csavignyi_homolog_perc_id
## 702 csavignyi_homolog_perc_id_r1
## 703 csavignyi_homolog_wga_coverage
## 704 csavignyi_homolog_orthology_confidence
## 705 celegans_homolog_ensembl_gene
## 706 celegans_homolog_associated_gene_name
## 707 celegans_homolog_ensembl_peptide
## 708 celegans_homolog_chromosome
## 709 celegans_homolog_chrom_start
## 710 celegans_homolog_chrom_end
## 711 celegans_homolog_canonical_transcript_protein
## 712 celegans_homolog_subtype
## 713 celegans_homolog_orthology_type
## 714 celegans_homolog_perc_id
## 715 celegans_homolog_perc_id_r1
## 716 celegans_homolog_orthology_confidence
## 717 fcatus_homolog_ensembl_gene
## 718 fcatus_homolog_associated_gene_name
## 719 fcatus_homolog_ensembl_peptide
## 720 fcatus_homolog_chromosome
## 721 fcatus_homolog_chrom_start
## 722 fcatus_homolog_chrom_end
## 723 fcatus_homolog_canonical_transcript_protein
## 724 fcatus_homolog_subtype
## 725 fcatus_homolog_orthology_type
## 726 fcatus_homolog_perc_id
## 727 fcatus_homolog_perc_id_r1
## 728 fcatus_homolog_goc_score
## 729 fcatus_homolog_wga_coverage
## 730 fcatus_homolog_orthology_confidence
## 731 cwagneri_homolog_ensembl_gene
## 732 cwagneri_homolog_associated_gene_name
## 733 cwagneri_homolog_ensembl_peptide
## 734 cwagneri_homolog_chromosome
## 735 cwagneri_homolog_chrom_start
## 736 cwagneri_homolog_chrom_end
## 737 cwagneri_homolog_canonical_transcript_protein
## 738 cwagneri_homolog_subtype
## 739 cwagneri_homolog_orthology_type
## 740 cwagneri_homolog_perc_id
## 741 cwagneri_homolog_perc_id_r1
## 742 cwagneri_homolog_goc_score
## 743 cwagneri_homolog_wga_coverage
## 744 cwagneri_homolog_orthology_confidence
## 745 cgobio_homolog_ensembl_gene
## 746 cgobio_homolog_associated_gene_name
## 747 cgobio_homolog_ensembl_peptide
## 748 cgobio_homolog_chromosome
## 749 cgobio_homolog_chrom_start
## 750 cgobio_homolog_chrom_end
## 751 cgobio_homolog_canonical_transcript_protein
## 752 cgobio_homolog_subtype
## 753 cgobio_homolog_orthology_type
## 754 cgobio_homolog_perc_id
## 755 cgobio_homolog_perc_id_r1
## 756 cgobio_homolog_goc_score
## 757 cgobio_homolog_wga_coverage
## 758 cgobio_homolog_orthology_confidence
## 759 ipunctatus_homolog_ensembl_gene
## 760 ipunctatus_homolog_associated_gene_name
## 761 ipunctatus_homolog_ensembl_peptide
## 762 ipunctatus_homolog_chromosome
## 763 ipunctatus_homolog_chrom_start
## 764 ipunctatus_homolog_chrom_end
## 765 ipunctatus_homolog_canonical_transcript_protein
## 766 ipunctatus_homolog_subtype
## 767 ipunctatus_homolog_orthology_type
## 768 ipunctatus_homolog_perc_id
## 769 ipunctatus_homolog_perc_id_r1
## 770 ipunctatus_homolog_goc_score
## 771 ipunctatus_homolog_wga_coverage
## 772 ipunctatus_homolog_orthology_confidence
## 773 ggallus_homolog_ensembl_gene
## 774 ggallus_homolog_associated_gene_name
## 775 ggallus_homolog_ensembl_peptide
## 776 ggallus_homolog_chromosome
## 777 ggallus_homolog_chrom_start
## 778 ggallus_homolog_chrom_end
## 779 ggallus_homolog_canonical_transcript_protein
## 780 ggallus_homolog_subtype
## 781 ggallus_homolog_orthology_type
## 782 ggallus_homolog_perc_id
## 783 ggallus_homolog_perc_id_r1
## 784 ggallus_homolog_goc_score
## 785 ggallus_homolog_wga_coverage
## 786 ggallus_homolog_orthology_confidence
## 787 ptroglodytes_homolog_ensembl_gene
## 788 ptroglodytes_homolog_associated_gene_name
## 789 ptroglodytes_homolog_ensembl_peptide
## 790 ptroglodytes_homolog_chromosome
## 791 ptroglodytes_homolog_chrom_start
## 792 ptroglodytes_homolog_chrom_end
## 793 ptroglodytes_homolog_canonical_transcript_protein
## 794 ptroglodytes_homolog_subtype
## 795 ptroglodytes_homolog_orthology_type
## 796 ptroglodytes_homolog_perc_id
## 797 ptroglodytes_homolog_perc_id_r1
## 798 ptroglodytes_homolog_goc_score
## 799 ptroglodytes_homolog_wga_coverage
## 800 ptroglodytes_homolog_orthology_confidence
## 801 cgchok1gshd_homolog_ensembl_gene
## 802 cgchok1gshd_homolog_associated_gene_name
## 803 cgchok1gshd_homolog_ensembl_peptide
## 804 cgchok1gshd_homolog_chromosome
## 805 cgchok1gshd_homolog_chrom_start
## 806 cgchok1gshd_homolog_chrom_end
## 807 cgchok1gshd_homolog_canonical_transcript_protein
## 808 cgchok1gshd_homolog_subtype
## 809 cgchok1gshd_homolog_orthology_type
## 810 cgchok1gshd_homolog_perc_id
## 811 cgchok1gshd_homolog_perc_id_r1
## 812 cgchok1gshd_homolog_goc_score
## 813 cgchok1gshd_homolog_wga_coverage
## 814 cgchok1gshd_homolog_orthology_confidence
## 815 osinensis_homolog_ensembl_gene
## 816 osinensis_homolog_associated_gene_name
## 817 osinensis_homolog_ensembl_peptide
## 818 osinensis_homolog_chromosome
## 819 osinensis_homolog_chrom_start
## 820 osinensis_homolog_chrom_end
## 821 osinensis_homolog_canonical_transcript_protein
## 822 osinensis_homolog_subtype
## 823 osinensis_homolog_orthology_type
## 824 osinensis_homolog_perc_id
## 825 osinensis_homolog_perc_id_r1
## 826 osinensis_homolog_goc_score
## 827 osinensis_homolog_wga_coverage
## 828 osinensis_homolog_orthology_confidence
## 829 psinensis_homolog_ensembl_gene
## 830 psinensis_homolog_associated_gene_name
## 831 psinensis_homolog_ensembl_peptide
## 832 psinensis_homolog_chromosome
## 833 psinensis_homolog_chrom_start
## 834 psinensis_homolog_chrom_end
## 835 psinensis_homolog_canonical_transcript_protein
## 836 psinensis_homolog_subtype
## 837 psinensis_homolog_orthology_type
## 838 psinensis_homolog_perc_id
## 839 psinensis_homolog_perc_id_r1
## 840 psinensis_homolog_goc_score
## 841 psinensis_homolog_wga_coverage
## 842 psinensis_homolog_orthology_confidence
## 843 otshawytscha_homolog_ensembl_gene
## 844 otshawytscha_homolog_associated_gene_name
## 845 otshawytscha_homolog_ensembl_peptide
## 846 otshawytscha_homolog_chromosome
## 847 otshawytscha_homolog_chrom_start
## 848 otshawytscha_homolog_chrom_end
## 849 otshawytscha_homolog_canonical_transcript_protein
## 850 otshawytscha_homolog_subtype
## 851 otshawytscha_homolog_orthology_type
## 852 otshawytscha_homolog_perc_id
## 853 otshawytscha_homolog_perc_id_r1
## 854 otshawytscha_homolog_goc_score
## 855 otshawytscha_homolog_wga_coverage
## 856 otshawytscha_homolog_orthology_confidence
## 857 atestudineus_homolog_ensembl_gene
## 858 atestudineus_homolog_associated_gene_name
## 859 atestudineus_homolog_ensembl_peptide
## 860 atestudineus_homolog_chromosome
## 861 atestudineus_homolog_chrom_start
## 862 atestudineus_homolog_chrom_end
## 863 atestudineus_homolog_canonical_transcript_protein
## 864 atestudineus_homolog_subtype
## 865 atestudineus_homolog_orthology_type
## 866 atestudineus_homolog_perc_id
## 867 atestudineus_homolog_perc_id_r1
## 868 atestudineus_homolog_goc_score
## 869 atestudineus_homolog_orthology_confidence
## 870 aocellaris_homolog_ensembl_gene
## 871 aocellaris_homolog_associated_gene_name
## 872 aocellaris_homolog_ensembl_peptide
## 873 aocellaris_homolog_chromosome
## 874 aocellaris_homolog_chrom_start
## 875 aocellaris_homolog_chrom_end
## 876 aocellaris_homolog_canonical_transcript_protein
## 877 aocellaris_homolog_subtype
## 878 aocellaris_homolog_orthology_type
## 879 aocellaris_homolog_perc_id
## 880 aocellaris_homolog_perc_id_r1
## 881 aocellaris_homolog_goc_score
## 882 aocellaris_homolog_wga_coverage
## 883 aocellaris_homolog_orthology_confidence
## 884 lchalumnae_homolog_ensembl_gene
## 885 lchalumnae_homolog_associated_gene_name
## 886 lchalumnae_homolog_ensembl_peptide
## 887 lchalumnae_homolog_chromosome
## 888 lchalumnae_homolog_chrom_start
## 889 lchalumnae_homolog_chrom_end
## 890 lchalumnae_homolog_canonical_transcript_protein
## 891 lchalumnae_homolog_subtype
## 892 lchalumnae_homolog_orthology_type
## 893 lchalumnae_homolog_perc_id
## 894 lchalumnae_homolog_perc_id_r1
## 895 lchalumnae_homolog_goc_score
## 896 lchalumnae_homolog_wga_coverage
## 897 lchalumnae_homolog_orthology_confidence
## 898 okisutch_homolog_ensembl_gene
## 899 okisutch_homolog_associated_gene_name
## 900 okisutch_homolog_ensembl_peptide
## 901 okisutch_homolog_chromosome
## 902 okisutch_homolog_chrom_start
## 903 okisutch_homolog_chrom_end
## 904 okisutch_homolog_canonical_transcript_protein
## 905 okisutch_homolog_subtype
## 906 okisutch_homolog_orthology_type
## 907 okisutch_homolog_perc_id
## 908 okisutch_homolog_perc_id_r1
## 909 okisutch_homolog_goc_score
## 910 okisutch_homolog_wga_coverage
## 911 okisutch_homolog_orthology_confidence
## 912 falbicollis_homolog_ensembl_gene
## 913 falbicollis_homolog_associated_gene_name
## 914 falbicollis_homolog_ensembl_peptide
## 915 falbicollis_homolog_chromosome
## 916 falbicollis_homolog_chrom_start
## 917 falbicollis_homolog_chrom_end
## 918 falbicollis_homolog_canonical_transcript_protein
## 919 falbicollis_homolog_subtype
## 920 falbicollis_homolog_orthology_type
## 921 falbicollis_homolog_perc_id
## 922 falbicollis_homolog_perc_id_r1
## 923 falbicollis_homolog_goc_score
## 924 falbicollis_homolog_orthology_confidence
## 925 scanaria_homolog_ensembl_gene
## 926 scanaria_homolog_associated_gene_name
## 927 scanaria_homolog_ensembl_peptide
## 928 scanaria_homolog_chromosome
## 929 scanaria_homolog_chrom_start
## 930 scanaria_homolog_chrom_end
## 931 scanaria_homolog_canonical_transcript_protein
## 932 scanaria_homolog_subtype
## 933 scanaria_homolog_orthology_type
## 934 scanaria_homolog_perc_id
## 935 scanaria_homolog_perc_id_r1
## 936 scanaria_homolog_goc_score
## 937 scanaria_homolog_wga_coverage
## 938 scanaria_homolog_orthology_confidence
## 939 cccarpio_homolog_ensembl_gene
## 940 cccarpio_homolog_associated_gene_name
## 941 cccarpio_homolog_ensembl_peptide
## 942 cccarpio_homolog_chromosome
## 943 cccarpio_homolog_chrom_start
## 944 cccarpio_homolog_chrom_end
## 945 cccarpio_homolog_canonical_transcript_protein
## 946 cccarpio_homolog_subtype
## 947 cccarpio_homolog_orthology_type
## 948 cccarpio_homolog_perc_id
## 949 cccarpio_homolog_perc_id_r1
## 950 cccarpio_homolog_goc_score
## 951 cccarpio_homolog_orthology_confidence
## 952 pmuralis_homolog_ensembl_gene
## 953 pmuralis_homolog_associated_gene_name
## 954 pmuralis_homolog_ensembl_peptide
## 955 pmuralis_homolog_chromosome
## 956 pmuralis_homolog_chrom_start
## 957 pmuralis_homolog_chrom_end
## 958 pmuralis_homolog_canonical_transcript_protein
## 959 pmuralis_homolog_subtype
## 960 pmuralis_homolog_orthology_type
## 961 pmuralis_homolog_perc_id
## 962 pmuralis_homolog_perc_id_r1
## 963 pmuralis_homolog_goc_score
## 964 pmuralis_homolog_wga_coverage
## 965 pmuralis_homolog_orthology_confidence
## 966 vursinus_homolog_ensembl_gene
## 967 vursinus_homolog_associated_gene_name
## 968 vursinus_homolog_ensembl_peptide
## 969 vursinus_homolog_chromosome
## 970 vursinus_homolog_chrom_start
## 971 vursinus_homolog_chrom_end
## 972 vursinus_homolog_canonical_transcript_protein
## 973 vursinus_homolog_subtype
## 974 vursinus_homolog_orthology_type
## 975 vursinus_homolog_perc_id
## 976 vursinus_homolog_perc_id_r1
## 977 vursinus_homolog_goc_score
## 978 vursinus_homolog_wga_coverage
## 979 vursinus_homolog_orthology_confidence
## 980 pcoquereli_homolog_ensembl_gene
## 981 pcoquereli_homolog_associated_gene_name
## 982 pcoquereli_homolog_ensembl_peptide
## 983 pcoquereli_homolog_chromosome
## 984 pcoquereli_homolog_chrom_start
## 985 pcoquereli_homolog_chrom_end
## 986 pcoquereli_homolog_canonical_transcript_protein
## 987 pcoquereli_homolog_subtype
## 988 pcoquereli_homolog_orthology_type
## 989 pcoquereli_homolog_perc_id
## 990 pcoquereli_homolog_perc_id_r1
## 991 pcoquereli_homolog_goc_score
## 992 pcoquereli_homolog_wga_coverage
## 993 pcoquereli_homolog_orthology_confidence
## 994 btaurus_homolog_ensembl_gene
## 995 btaurus_homolog_associated_gene_name
## 996 btaurus_homolog_ensembl_peptide
## 997 btaurus_homolog_chromosome
## 998 btaurus_homolog_chrom_start
## 999 btaurus_homolog_chrom_end
## 1000 btaurus_homolog_canonical_transcript_protein
## 1001 btaurus_homolog_subtype
## 1002 btaurus_homolog_orthology_type
## 1003 btaurus_homolog_perc_id
## 1004 btaurus_homolog_perc_id_r1
## 1005 btaurus_homolog_goc_score
## 1006 btaurus_homolog_wga_coverage
## 1007 btaurus_homolog_orthology_confidence
## 1008 mfascicularis_homolog_ensembl_gene
## 1009 mfascicularis_homolog_associated_gene_name
## 1010 mfascicularis_homolog_ensembl_peptide
## 1011 mfascicularis_homolog_chromosome
## 1012 mfascicularis_homolog_chrom_start
## 1013 mfascicularis_homolog_chrom_end
## 1014 mfascicularis_homolog_canonical_transcript_protein
## 1015 mfascicularis_homolog_subtype
## 1016 mfascicularis_homolog_orthology_type
## 1017 mfascicularis_homolog_perc_id
## 1018 mfascicularis_homolog_perc_id_r1
## 1019 mfascicularis_homolog_goc_score
## 1020 mfascicularis_homolog_wga_coverage
## 1021 mfascicularis_homolog_orthology_confidence
## 1022 odegus_homolog_ensembl_gene
## 1023 odegus_homolog_associated_gene_name
## 1024 odegus_homolog_ensembl_peptide
## 1025 odegus_homolog_chromosome
## 1026 odegus_homolog_chrom_start
## 1027 odegus_homolog_chrom_end
## 1028 odegus_homolog_canonical_transcript_protein
## 1029 odegus_homolog_subtype
## 1030 odegus_homolog_orthology_type
## 1031 odegus_homolog_perc_id
## 1032 odegus_homolog_perc_id_r1
## 1033 odegus_homolog_goc_score
## 1034 odegus_homolog_wga_coverage
## 1035 odegus_homolog_orthology_confidence
## 1036 dclupeoides_homolog_ensembl_gene
## 1037 dclupeoides_homolog_associated_gene_name
## 1038 dclupeoides_homolog_ensembl_peptide
## 1039 dclupeoides_homolog_chromosome
## 1040 dclupeoides_homolog_chrom_start
## 1041 dclupeoides_homolog_chrom_end
## 1042 dclupeoides_homolog_canonical_transcript_protein
## 1043 dclupeoides_homolog_subtype
## 1044 dclupeoides_homolog_orthology_type
## 1045 dclupeoides_homolog_perc_id
## 1046 dclupeoides_homolog_perc_id_r1
## 1047 dclupeoides_homolog_goc_score
## 1048 dclupeoides_homolog_wga_coverage
## 1049 dclupeoides_homolog_orthology_confidence
## 1050 cldingo_homolog_ensembl_gene
## 1051 cldingo_homolog_associated_gene_name
## 1052 cldingo_homolog_ensembl_peptide
## 1053 cldingo_homolog_chromosome
## 1054 cldingo_homolog_chrom_start
## 1055 cldingo_homolog_chrom_end
## 1056 cldingo_homolog_canonical_transcript_protein
## 1057 cldingo_homolog_subtype
## 1058 cldingo_homolog_orthology_type
## 1059 cldingo_homolog_perc_id
## 1060 cldingo_homolog_perc_id_r1
## 1061 cldingo_homolog_goc_score
## 1062 cldingo_homolog_wga_coverage
## 1063 cldingo_homolog_orthology_confidence
## 1064 clfamiliaris_homolog_ensembl_gene
## 1065 clfamiliaris_homolog_associated_gene_name
## 1066 clfamiliaris_homolog_ensembl_peptide
## 1067 clfamiliaris_homolog_chromosome
## 1068 clfamiliaris_homolog_chrom_start
## 1069 clfamiliaris_homolog_chrom_end
## 1070 clfamiliaris_homolog_canonical_transcript_protein
## 1071 clfamiliaris_homolog_subtype
## 1072 clfamiliaris_homolog_orthology_type
## 1073 clfamiliaris_homolog_perc_id
## 1074 clfamiliaris_homolog_perc_id_r1
## 1075 clfamiliaris_homolog_goc_score
## 1076 clfamiliaris_homolog_wga_coverage
## 1077 clfamiliaris_homolog_orthology_confidence
## 1078 ttruncatus_homolog_ensembl_gene
## 1079 ttruncatus_homolog_associated_gene_name
## 1080 ttruncatus_homolog_ensembl_peptide
## 1081 ttruncatus_homolog_chromosome
## 1082 ttruncatus_homolog_chrom_start
## 1083 ttruncatus_homolog_chrom_end
## 1084 ttruncatus_homolog_canonical_transcript_protein
## 1085 ttruncatus_homolog_subtype
## 1086 ttruncatus_homolog_orthology_type
## 1087 ttruncatus_homolog_perc_id
## 1088 ttruncatus_homolog_perc_id_r1
## 1089 ttruncatus_homolog_goc_score
## 1090 ttruncatus_homolog_wga_coverage
## 1091 ttruncatus_homolog_orthology_confidence
## 1092 bgrunniens_homolog_ensembl_gene
## 1093 bgrunniens_homolog_associated_gene_name
## 1094 bgrunniens_homolog_ensembl_peptide
## 1095 bgrunniens_homolog_chromosome
## 1096 bgrunniens_homolog_chrom_start
## 1097 bgrunniens_homolog_chrom_end
## 1098 bgrunniens_homolog_canonical_transcript_protein
## 1099 bgrunniens_homolog_subtype
## 1100 bgrunniens_homolog_orthology_type
## 1101 bgrunniens_homolog_perc_id
## 1102 bgrunniens_homolog_perc_id_r1
## 1103 bgrunniens_homolog_goc_score
## 1104 bgrunniens_homolog_wga_coverage
## 1105 bgrunniens_homolog_orthology_confidence
## 1106 easinus_homolog_ensembl_gene
## 1107 easinus_homolog_associated_gene_name
## 1108 easinus_homolog_ensembl_peptide
## 1109 easinus_homolog_chromosome
## 1110 easinus_homolog_chrom_start
## 1111 easinus_homolog_chrom_end
## 1112 easinus_homolog_canonical_transcript_protein
## 1113 easinus_homolog_subtype
## 1114 easinus_homolog_orthology_type
## 1115 easinus_homolog_perc_id
## 1116 easinus_homolog_perc_id_r1
## 1117 easinus_homolog_goc_score
## 1118 easinus_homolog_orthology_confidence
## 1119 mleucophaeus_homolog_ensembl_gene
## 1120 mleucophaeus_homolog_associated_gene_name
## 1121 mleucophaeus_homolog_ensembl_peptide
## 1122 mleucophaeus_homolog_chromosome
## 1123 mleucophaeus_homolog_chrom_start
## 1124 mleucophaeus_homolog_chrom_end
## 1125 mleucophaeus_homolog_canonical_transcript_protein
## 1126 mleucophaeus_homolog_subtype
## 1127 mleucophaeus_homolog_orthology_type
## 1128 mleucophaeus_homolog_perc_id
## 1129 mleucophaeus_homolog_perc_id_r1
## 1130 mleucophaeus_homolog_goc_score
## 1131 mleucophaeus_homolog_wga_coverage
## 1132 mleucophaeus_homolog_orthology_confidence
## 1133 dmelanogaster_homolog_ensembl_gene
## 1134 dmelanogaster_homolog_associated_gene_name
## 1135 dmelanogaster_homolog_ensembl_peptide
## 1136 dmelanogaster_homolog_chromosome
## 1137 dmelanogaster_homolog_chrom_start
## 1138 dmelanogaster_homolog_chrom_end
## 1139 dmelanogaster_homolog_canonical_transcript_protein
## 1140 dmelanogaster_homolog_subtype
## 1141 dmelanogaster_homolog_orthology_type
## 1142 dmelanogaster_homolog_perc_id
## 1143 dmelanogaster_homolog_perc_id_r1
## 1144 dmelanogaster_homolog_orthology_confidence
## 1145 applatyrhynchos_homolog_ensembl_gene
## 1146 applatyrhynchos_homolog_associated_gene_name
## 1147 applatyrhynchos_homolog_ensembl_peptide
## 1148 applatyrhynchos_homolog_chromosome
## 1149 applatyrhynchos_homolog_chrom_start
## 1150 applatyrhynchos_homolog_chrom_end
## 1151 applatyrhynchos_homolog_canonical_transcript_protein
## 1152 applatyrhynchos_homolog_subtype
## 1153 applatyrhynchos_homolog_orthology_type
## 1154 applatyrhynchos_homolog_perc_id
## 1155 applatyrhynchos_homolog_perc_id_r1
## 1156 applatyrhynchos_homolog_goc_score
## 1157 applatyrhynchos_homolog_wga_coverage
## 1158 applatyrhynchos_homolog_orthology_confidence
## 1159 ptextilis_homolog_ensembl_gene
## 1160 ptextilis_homolog_associated_gene_name
## 1161 ptextilis_homolog_ensembl_peptide
## 1162 ptextilis_homolog_chromosome
## 1163 ptextilis_homolog_chrom_start
## 1164 ptextilis_homolog_chrom_end
## 1165 ptextilis_homolog_canonical_transcript_protein
## 1166 ptextilis_homolog_subtype
## 1167 ptextilis_homolog_orthology_type
## 1168 ptextilis_homolog_perc_id
## 1169 ptextilis_homolog_perc_id_r1
## 1170 ptextilis_homolog_goc_score
## 1171 ptextilis_homolog_wga_coverage
## 1172 ptextilis_homolog_orthology_confidence
## 1173 acalliptera_homolog_ensembl_gene
## 1174 acalliptera_homolog_associated_gene_name
## 1175 acalliptera_homolog_ensembl_peptide
## 1176 acalliptera_homolog_chromosome
## 1177 acalliptera_homolog_chrom_start
## 1178 acalliptera_homolog_chrom_end
## 1179 acalliptera_homolog_canonical_transcript_protein
## 1180 acalliptera_homolog_subtype
## 1181 acalliptera_homolog_orthology_type
## 1182 acalliptera_homolog_perc_id
## 1183 acalliptera_homolog_perc_id_r1
## 1184 acalliptera_homolog_goc_score
## 1185 acalliptera_homolog_wga_coverage
## 1186 acalliptera_homolog_orthology_confidence
## 1187 eelectricus_homolog_ensembl_gene
## 1188 eelectricus_homolog_associated_gene_name
## 1189 eelectricus_homolog_ensembl_peptide
## 1190 eelectricus_homolog_chromosome
## 1191 eelectricus_homolog_chrom_start
## 1192 eelectricus_homolog_chrom_end
## 1193 eelectricus_homolog_canonical_transcript_protein
## 1194 eelectricus_homolog_subtype
## 1195 eelectricus_homolog_orthology_type
## 1196 eelectricus_homolog_perc_id
## 1197 eelectricus_homolog_perc_id_r1
## 1198 eelectricus_homolog_goc_score
## 1199 eelectricus_homolog_wga_coverage
## 1200 eelectricus_homolog_orthology_confidence
## 1201 lafricana_homolog_ensembl_gene
## 1202 lafricana_homolog_associated_gene_name
## 1203 lafricana_homolog_ensembl_peptide
## 1204 lafricana_homolog_chromosome
## 1205 lafricana_homolog_chrom_start
## 1206 lafricana_homolog_chrom_end
## 1207 lafricana_homolog_canonical_transcript_protein
## 1208 lafricana_homolog_subtype
## 1209 lafricana_homolog_orthology_type
## 1210 lafricana_homolog_perc_id
## 1211 lafricana_homolog_perc_id_r1
## 1212 lafricana_homolog_goc_score
## 1213 lafricana_homolog_wga_coverage
## 1214 lafricana_homolog_orthology_confidence
## 1215 cmilii_homolog_ensembl_gene
## 1216 cmilii_homolog_associated_gene_name
## 1217 cmilii_homolog_ensembl_peptide
## 1218 cmilii_homolog_chromosome
## 1219 cmilii_homolog_chrom_start
## 1220 cmilii_homolog_chrom_end
## 1221 cmilii_homolog_canonical_transcript_protein
## 1222 cmilii_homolog_subtype
## 1223 cmilii_homolog_orthology_type
## 1224 cmilii_homolog_perc_id
## 1225 cmilii_homolog_perc_id_r1
## 1226 cmilii_homolog_wga_coverage
## 1227 cmilii_homolog_orthology_confidence
## 1228 svulgaris_homolog_ensembl_gene
## 1229 svulgaris_homolog_associated_gene_name
## 1230 svulgaris_homolog_ensembl_peptide
## 1231 svulgaris_homolog_chromosome
## 1232 svulgaris_homolog_chrom_start
## 1233 svulgaris_homolog_chrom_end
## 1234 svulgaris_homolog_canonical_transcript_protein
## 1235 svulgaris_homolog_subtype
## 1236 svulgaris_homolog_orthology_type
## 1237 svulgaris_homolog_perc_id
## 1238 svulgaris_homolog_perc_id_r1
## 1239 svulgaris_homolog_goc_score
## 1240 svulgaris_homolog_wga_coverage
## 1241 svulgaris_homolog_orthology_confidence
## 1242 dlabrax_homolog_ensembl_gene
## 1243 dlabrax_homolog_associated_gene_name
## 1244 dlabrax_homolog_ensembl_peptide
## 1245 dlabrax_homolog_chromosome
## 1246 dlabrax_homolog_chrom_start
## 1247 dlabrax_homolog_chrom_end
## 1248 dlabrax_homolog_canonical_transcript_protein
## 1249 dlabrax_homolog_subtype
## 1250 dlabrax_homolog_orthology_type
## 1251 dlabrax_homolog_perc_id
## 1252 dlabrax_homolog_perc_id_r1
## 1253 dlabrax_homolog_goc_score
## 1254 dlabrax_homolog_orthology_confidence
## 1255 mpfuro_homolog_ensembl_gene
## 1256 mpfuro_homolog_associated_gene_name
## 1257 mpfuro_homolog_ensembl_peptide
## 1258 mpfuro_homolog_chromosome
## 1259 mpfuro_homolog_chrom_start
## 1260 mpfuro_homolog_chrom_end
## 1261 mpfuro_homolog_canonical_transcript_protein
## 1262 mpfuro_homolog_subtype
## 1263 mpfuro_homolog_orthology_type
## 1264 mpfuro_homolog_perc_id
## 1265 mpfuro_homolog_perc_id_r1
## 1266 mpfuro_homolog_goc_score
## 1267 mpfuro_homolog_wga_coverage
## 1268 mpfuro_homolog_orthology_confidence
## 1269 trubripes_homolog_ensembl_gene
## 1270 trubripes_homolog_associated_gene_name
## 1271 trubripes_homolog_ensembl_peptide
## 1272 trubripes_homolog_chromosome
## 1273 trubripes_homolog_chrom_start
## 1274 trubripes_homolog_chrom_end
## 1275 trubripes_homolog_canonical_transcript_protein
## 1276 trubripes_homolog_subtype
## 1277 trubripes_homolog_orthology_type
## 1278 trubripes_homolog_perc_id
## 1279 trubripes_homolog_perc_id_r1
## 1280 trubripes_homolog_goc_score
## 1281 trubripes_homolog_wga_coverage
## 1282 trubripes_homolog_orthology_confidence
## 1283 amelanoleuca_homolog_ensembl_gene
## 1284 amelanoleuca_homolog_associated_gene_name
## 1285 amelanoleuca_homolog_ensembl_peptide
## 1286 amelanoleuca_homolog_chromosome
## 1287 amelanoleuca_homolog_chrom_start
## 1288 amelanoleuca_homolog_chrom_end
## 1289 amelanoleuca_homolog_canonical_transcript_protein
## 1290 amelanoleuca_homolog_subtype
## 1291 amelanoleuca_homolog_orthology_type
## 1292 amelanoleuca_homolog_perc_id
## 1293 amelanoleuca_homolog_perc_id_r1
## 1294 amelanoleuca_homolog_goc_score
## 1295 amelanoleuca_homolog_orthology_confidence
## 1296 nleucogenys_homolog_ensembl_gene
## 1297 nleucogenys_homolog_associated_gene_name
## 1298 nleucogenys_homolog_ensembl_peptide
## 1299 nleucogenys_homolog_chromosome
## 1300 nleucogenys_homolog_chrom_start
## 1301 nleucogenys_homolog_chrom_end
## 1302 nleucogenys_homolog_canonical_transcript_protein
## 1303 nleucogenys_homolog_subtype
## 1304 nleucogenys_homolog_orthology_type
## 1305 nleucogenys_homolog_perc_id
## 1306 nleucogenys_homolog_perc_id_r1
## 1307 nleucogenys_homolog_goc_score
## 1308 nleucogenys_homolog_wga_coverage
## 1309 nleucogenys_homolog_orthology_confidence
## 1310 saurata_homolog_ensembl_gene
## 1311 saurata_homolog_associated_gene_name
## 1312 saurata_homolog_ensembl_peptide
## 1313 saurata_homolog_chromosome
## 1314 saurata_homolog_chrom_start
## 1315 saurata_homolog_chrom_end
## 1316 saurata_homolog_canonical_transcript_protein
## 1317 saurata_homolog_subtype
## 1318 saurata_homolog_orthology_type
## 1319 saurata_homolog_perc_id
## 1320 saurata_homolog_perc_id_r1
## 1321 saurata_homolog_goc_score
## 1322 saurata_homolog_wga_coverage
## 1323 saurata_homolog_orthology_confidence
## 1324 chircus_homolog_ensembl_gene
## 1325 chircus_homolog_associated_gene_name
## 1326 chircus_homolog_ensembl_peptide
## 1327 chircus_homolog_chromosome
## 1328 chircus_homolog_chrom_start
## 1329 chircus_homolog_chrom_end
## 1330 chircus_homolog_canonical_transcript_protein
## 1331 chircus_homolog_subtype
## 1332 chircus_homolog_orthology_type
## 1333 chircus_homolog_perc_id
## 1334 chircus_homolog_perc_id_r1
## 1335 chircus_homolog_goc_score
## 1336 chircus_homolog_wga_coverage
## 1337 chircus_homolog_orthology_confidence
## 1338 mauratus_homolog_ensembl_gene
## 1339 mauratus_homolog_associated_gene_name
## 1340 mauratus_homolog_ensembl_peptide
## 1341 mauratus_homolog_chromosome
## 1342 mauratus_homolog_chrom_start
## 1343 mauratus_homolog_chrom_end
## 1344 mauratus_homolog_canonical_transcript_protein
## 1345 mauratus_homolog_subtype
## 1346 mauratus_homolog_orthology_type
## 1347 mauratus_homolog_perc_id
## 1348 mauratus_homolog_perc_id_r1
## 1349 mauratus_homolog_goc_score
## 1350 mauratus_homolog_wga_coverage
## 1351 mauratus_homolog_orthology_confidence
## 1352 acchrysaetos_homolog_ensembl_gene
## 1353 acchrysaetos_homolog_associated_gene_name
## 1354 acchrysaetos_homolog_ensembl_peptide
## 1355 acchrysaetos_homolog_chromosome
## 1356 acchrysaetos_homolog_chrom_start
## 1357 acchrysaetos_homolog_chrom_end
## 1358 acchrysaetos_homolog_canonical_transcript_protein
## 1359 acchrysaetos_homolog_subtype
## 1360 acchrysaetos_homolog_orthology_type
## 1361 acchrysaetos_homolog_perc_id
## 1362 acchrysaetos_homolog_perc_id_r1
## 1363 acchrysaetos_homolog_goc_score
## 1364 acchrysaetos_homolog_wga_coverage
## 1365 acchrysaetos_homolog_orthology_confidence
## 1366 rroxellana_homolog_ensembl_gene
## 1367 rroxellana_homolog_associated_gene_name
## 1368 rroxellana_homolog_ensembl_peptide
## 1369 rroxellana_homolog_chromosome
## 1370 rroxellana_homolog_chrom_start
## 1371 rroxellana_homolog_chrom_end
## 1372 rroxellana_homolog_canonical_transcript_protein
## 1373 rroxellana_homolog_subtype
## 1374 rroxellana_homolog_orthology_type
## 1375 rroxellana_homolog_perc_id
## 1376 rroxellana_homolog_perc_id_r1
## 1377 rroxellana_homolog_goc_score
## 1378 rroxellana_homolog_wga_coverage
## 1379 rroxellana_homolog_orthology_confidence
## 1380 sgrahami_homolog_ensembl_gene
## 1381 sgrahami_homolog_associated_gene_name
## 1382 sgrahami_homolog_ensembl_peptide
## 1383 sgrahami_homolog_chromosome
## 1384 sgrahami_homolog_chrom_start
## 1385 sgrahami_homolog_chrom_end
## 1386 sgrahami_homolog_canonical_transcript_protein
## 1387 sgrahami_homolog_subtype
## 1388 sgrahami_homolog_orthology_type
## 1389 sgrahami_homolog_perc_id
## 1390 sgrahami_homolog_perc_id_r1
## 1391 sgrahami_homolog_goc_score
## 1392 sgrahami_homolog_wga_coverage
## 1393 sgrahami_homolog_orthology_confidence
## 1394 cauratus_homolog_ensembl_gene
## 1395 cauratus_homolog_associated_gene_name
## 1396 cauratus_homolog_ensembl_peptide
## 1397 cauratus_homolog_chromosome
## 1398 cauratus_homolog_chrom_start
## 1399 cauratus_homolog_chrom_end
## 1400 cauratus_homolog_canonical_transcript_protein
## 1401 cauratus_homolog_subtype
## 1402 cauratus_homolog_orthology_type
## 1403 cauratus_homolog_perc_id
## 1404 cauratus_homolog_perc_id_r1
## 1405 cauratus_homolog_goc_score
## 1406 cauratus_homolog_wga_coverage
## 1407 cauratus_homolog_orthology_confidence
## 1408 gevgoodei_homolog_ensembl_gene
## 1409 gevgoodei_homolog_associated_gene_name
## 1410 gevgoodei_homolog_ensembl_peptide
## 1411 gevgoodei_homolog_chromosome
## 1412 gevgoodei_homolog_chrom_start
## 1413 gevgoodei_homolog_chrom_end
## 1414 gevgoodei_homolog_canonical_transcript_protein
## 1415 gevgoodei_homolog_subtype
## 1416 gevgoodei_homolog_orthology_type
## 1417 gevgoodei_homolog_perc_id
## 1418 gevgoodei_homolog_perc_id_r1
## 1419 gevgoodei_homolog_goc_score
## 1420 gevgoodei_homolog_wga_coverage
## 1421 gevgoodei_homolog_orthology_confidence
## 1422 ggorilla_homolog_ensembl_gene
## 1423 ggorilla_homolog_associated_gene_name
## 1424 ggorilla_homolog_ensembl_peptide
## 1425 ggorilla_homolog_chromosome
## 1426 ggorilla_homolog_chrom_start
## 1427 ggorilla_homolog_chrom_end
## 1428 ggorilla_homolog_canonical_transcript_protein
## 1429 ggorilla_homolog_subtype
## 1430 ggorilla_homolog_orthology_type
## 1431 ggorilla_homolog_perc_id
## 1432 ggorilla_homolog_perc_id_r1
## 1433 ggorilla_homolog_goc_score
## 1434 ggorilla_homolog_wga_coverage
## 1435 ggorilla_homolog_orthology_confidence
## 1436 pmajor_homolog_ensembl_gene
## 1437 pmajor_homolog_associated_gene_name
## 1438 pmajor_homolog_ensembl_peptide
## 1439 pmajor_homolog_chromosome
## 1440 pmajor_homolog_chrom_start
## 1441 pmajor_homolog_chrom_end
## 1442 pmajor_homolog_canonical_transcript_protein
## 1443 pmajor_homolog_subtype
## 1444 pmajor_homolog_orthology_type
## 1445 pmajor_homolog_perc_id
## 1446 pmajor_homolog_perc_id_r1
## 1447 pmajor_homolog_goc_score
## 1448 pmajor_homolog_wga_coverage
## 1449 pmajor_homolog_orthology_confidence
## 1450 sdumerili_homolog_ensembl_gene
## 1451 sdumerili_homolog_associated_gene_name
## 1452 sdumerili_homolog_ensembl_peptide
## 1453 sdumerili_homolog_chromosome
## 1454 sdumerili_homolog_chrom_start
## 1455 sdumerili_homolog_chrom_end
## 1456 sdumerili_homolog_canonical_transcript_protein
## 1457 sdumerili_homolog_subtype
## 1458 sdumerili_homolog_orthology_type
## 1459 sdumerili_homolog_perc_id
## 1460 sdumerili_homolog_perc_id_r1
## 1461 sdumerili_homolog_goc_score
## 1462 sdumerili_homolog_wga_coverage
## 1463 sdumerili_homolog_orthology_confidence
## 1464 psimus_homolog_ensembl_gene
## 1465 psimus_homolog_associated_gene_name
## 1466 psimus_homolog_ensembl_peptide
## 1467 psimus_homolog_chromosome
## 1468 psimus_homolog_chrom_start
## 1469 psimus_homolog_chrom_end
## 1470 psimus_homolog_canonical_transcript_protein
## 1471 psimus_homolog_subtype
## 1472 psimus_homolog_orthology_type
## 1473 psimus_homolog_perc_id
## 1474 psimus_homolog_perc_id_r1
## 1475 psimus_homolog_goc_score
## 1476 psimus_homolog_wga_coverage
## 1477 psimus_homolog_orthology_confidence
## 1478 rferrumequinum_homolog_ensembl_gene
## 1479 rferrumequinum_homolog_associated_gene_name
## 1480 rferrumequinum_homolog_ensembl_peptide
## 1481 rferrumequinum_homolog_chromosome
## 1482 rferrumequinum_homolog_chrom_start
## 1483 rferrumequinum_homolog_chrom_end
## 1484 rferrumequinum_homolog_canonical_transcript_protein
## 1485 rferrumequinum_homolog_subtype
## 1486 rferrumequinum_homolog_orthology_type
## 1487 rferrumequinum_homolog_perc_id
## 1488 rferrumequinum_homolog_perc_id_r1
## 1489 rferrumequinum_homolog_goc_score
## 1490 rferrumequinum_homolog_wga_coverage
## 1491 rferrumequinum_homolog_orthology_confidence
## 1492 acarolinensis_homolog_ensembl_gene
## 1493 acarolinensis_homolog_associated_gene_name
## 1494 acarolinensis_homolog_ensembl_peptide
## 1495 acarolinensis_homolog_chromosome
## 1496 acarolinensis_homolog_chrom_start
## 1497 acarolinensis_homolog_chrom_end
## 1498 acarolinensis_homolog_canonical_transcript_protein
## 1499 acarolinensis_homolog_subtype
## 1500 acarolinensis_homolog_orthology_type
## 1501 acarolinensis_homolog_perc_id
## 1502 acarolinensis_homolog_perc_id_r1
## 1503 acarolinensis_homolog_goc_score
## 1504 acarolinensis_homolog_orthology_confidence
## 1505 cporcellus_homolog_ensembl_gene
## 1506 cporcellus_homolog_associated_gene_name
## 1507 cporcellus_homolog_ensembl_peptide
## 1508 cporcellus_homolog_chromosome
## 1509 cporcellus_homolog_chrom_start
## 1510 cporcellus_homolog_chrom_end
## 1511 cporcellus_homolog_canonical_transcript_protein
## 1512 cporcellus_homolog_subtype
## 1513 cporcellus_homolog_orthology_type
## 1514 cporcellus_homolog_perc_id
## 1515 cporcellus_homolog_perc_id_r1
## 1516 cporcellus_homolog_goc_score
## 1517 cporcellus_homolog_wga_coverage
## 1518 cporcellus_homolog_orthology_confidence
## 1519 preticulata_homolog_ensembl_gene
## 1520 preticulata_homolog_associated_gene_name
## 1521 preticulata_homolog_ensembl_peptide
## 1522 preticulata_homolog_chromosome
## 1523 preticulata_homolog_chrom_start
## 1524 preticulata_homolog_chrom_end
## 1525 preticulata_homolog_canonical_transcript_protein
## 1526 preticulata_homolog_subtype
## 1527 preticulata_homolog_orthology_type
## 1528 preticulata_homolog_perc_id
## 1529 preticulata_homolog_perc_id_r1
## 1530 preticulata_homolog_goc_score
## 1531 preticulata_homolog_wga_coverage
## 1532 preticulata_homolog_orthology_confidence
## 1533 eburgeri_homolog_ensembl_gene
## 1534 eburgeri_homolog_associated_gene_name
## 1535 eburgeri_homolog_ensembl_peptide
## 1536 eburgeri_homolog_chromosome
## 1537 eburgeri_homolog_chrom_start
## 1538 eburgeri_homolog_chrom_end
## 1539 eburgeri_homolog_canonical_transcript_protein
## 1540 eburgeri_homolog_subtype
## 1541 eburgeri_homolog_orthology_type
## 1542 eburgeri_homolog_perc_id
## 1543 eburgeri_homolog_perc_id_r1
## 1544 eburgeri_homolog_wga_coverage
## 1545 eburgeri_homolog_orthology_confidence
## 1546 eeuropaeus_homolog_ensembl_gene
## 1547 eeuropaeus_homolog_associated_gene_name
## 1548 eeuropaeus_homolog_ensembl_peptide
## 1549 eeuropaeus_homolog_chromosome
## 1550 eeuropaeus_homolog_chrom_start
## 1551 eeuropaeus_homolog_chrom_end
## 1552 eeuropaeus_homolog_canonical_transcript_protein
## 1553 eeuropaeus_homolog_subtype
## 1554 eeuropaeus_homolog_orthology_type
## 1555 eeuropaeus_homolog_perc_id
## 1556 eeuropaeus_homolog_perc_id_r1
## 1557 eeuropaeus_homolog_goc_score
## 1558 eeuropaeus_homolog_wga_coverage
## 1559 eeuropaeus_homolog_orthology_confidence
## 1560 ecaballus_homolog_ensembl_gene
## 1561 ecaballus_homolog_associated_gene_name
## 1562 ecaballus_homolog_ensembl_peptide
## 1563 ecaballus_homolog_chromosome
## 1564 ecaballus_homolog_chrom_start
## 1565 ecaballus_homolog_chrom_end
## 1566 ecaballus_homolog_canonical_transcript_protein
## 1567 ecaballus_homolog_subtype
## 1568 ecaballus_homolog_orthology_type
## 1569 ecaballus_homolog_perc_id
## 1570 ecaballus_homolog_perc_id_r1
## 1571 ecaballus_homolog_goc_score
## 1572 ecaballus_homolog_wga_coverage
## 1573 ecaballus_homolog_orthology_confidence
## 1574 hhucho_homolog_ensembl_gene
## 1575 hhucho_homolog_associated_gene_name
## 1576 hhucho_homolog_ensembl_peptide
## 1577 hhucho_homolog_chromosome
## 1578 hhucho_homolog_chrom_start
## 1579 hhucho_homolog_chrom_end
## 1580 hhucho_homolog_canonical_transcript_protein
## 1581 hhucho_homolog_subtype
## 1582 hhucho_homolog_orthology_type
## 1583 hhucho_homolog_perc_id
## 1584 hhucho_homolog_perc_id_r1
## 1585 hhucho_homolog_goc_score
## 1586 hhucho_homolog_wga_coverage
## 1587 hhucho_homolog_orthology_confidence
## 1588 bihybrid_homolog_ensembl_gene
## 1589 bihybrid_homolog_associated_gene_name
## 1590 bihybrid_homolog_ensembl_peptide
## 1591 bihybrid_homolog_chromosome
## 1592 bihybrid_homolog_chrom_start
## 1593 bihybrid_homolog_chrom_end
## 1594 bihybrid_homolog_canonical_transcript_protein
## 1595 bihybrid_homolog_subtype
## 1596 bihybrid_homolog_orthology_type
## 1597 bihybrid_homolog_perc_id
## 1598 bihybrid_homolog_perc_id_r1
## 1599 bihybrid_homolog_goc_score
## 1600 bihybrid_homolog_wga_coverage
## 1601 bihybrid_homolog_orthology_confidence
## 1602 pcapensis_homolog_ensembl_gene
## 1603 pcapensis_homolog_associated_gene_name
## 1604 pcapensis_homolog_ensembl_peptide
## 1605 pcapensis_homolog_chromosome
## 1606 pcapensis_homolog_chrom_start
## 1607 pcapensis_homolog_chrom_end
## 1608 pcapensis_homolog_canonical_transcript_protein
## 1609 pcapensis_homolog_subtype
## 1610 pcapensis_homolog_orthology_type
## 1611 pcapensis_homolog_perc_id
## 1612 pcapensis_homolog_perc_id_r1
## 1613 pcapensis_homolog_goc_score
## 1614 pcapensis_homolog_wga_coverage
## 1615 pcapensis_homolog_orthology_confidence
## 1616 nnaja_homolog_ensembl_gene
## 1617 nnaja_homolog_associated_gene_name
## 1618 nnaja_homolog_ensembl_peptide
## 1619 nnaja_homolog_chromosome
## 1620 nnaja_homolog_chrom_start
## 1621 nnaja_homolog_chrom_end
## 1622 nnaja_homolog_canonical_transcript_protein
## 1623 nnaja_homolog_subtype
## 1624 nnaja_homolog_orthology_type
## 1625 nnaja_homolog_perc_id
## 1626 nnaja_homolog_perc_id_r1
## 1627 nnaja_homolog_goc_score
## 1628 nnaja_homolog_wga_coverage
## 1629 nnaja_homolog_orthology_confidence
## 1630 omelastigma_homolog_ensembl_gene
## 1631 omelastigma_homolog_associated_gene_name
## 1632 omelastigma_homolog_ensembl_peptide
## 1633 omelastigma_homolog_chromosome
## 1634 omelastigma_homolog_chrom_start
## 1635 omelastigma_homolog_chrom_end
## 1636 omelastigma_homolog_canonical_transcript_protein
## 1637 omelastigma_homolog_subtype
## 1638 omelastigma_homolog_orthology_type
## 1639 omelastigma_homolog_perc_id
## 1640 omelastigma_homolog_perc_id_r1
## 1641 omelastigma_homolog_goc_score
## 1642 omelastigma_homolog_wga_coverage
## 1643 omelastigma_homolog_orthology_confidence
## 1644 olatipes_homolog_ensembl_gene
## 1645 olatipes_homolog_associated_gene_name
## 1646 olatipes_homolog_ensembl_peptide
## 1647 olatipes_homolog_chromosome
## 1648 olatipes_homolog_chrom_start
## 1649 olatipes_homolog_chrom_end
## 1650 olatipes_homolog_canonical_transcript_protein
## 1651 olatipes_homolog_subtype
## 1652 olatipes_homolog_orthology_type
## 1653 olatipes_homolog_perc_id
## 1654 olatipes_homolog_perc_id_r1
## 1655 olatipes_homolog_goc_score
## 1656 olatipes_homolog_wga_coverage
## 1657 olatipes_homolog_orthology_confidence
## 1658 cjaponica_homolog_ensembl_gene
## 1659 cjaponica_homolog_associated_gene_name
## 1660 cjaponica_homolog_ensembl_peptide
## 1661 cjaponica_homolog_chromosome
## 1662 cjaponica_homolog_chrom_start
## 1663 cjaponica_homolog_chrom_end
## 1664 cjaponica_homolog_canonical_transcript_protein
## 1665 cjaponica_homolog_subtype
## 1666 cjaponica_homolog_orthology_type
## 1667 cjaponica_homolog_perc_id
## 1668 cjaponica_homolog_perc_id_r1
## 1669 cjaponica_homolog_goc_score
## 1670 cjaponica_homolog_wga_coverage
## 1671 cjaponica_homolog_orthology_confidence
## 1672 ojavanicus_homolog_ensembl_gene
## 1673 ojavanicus_homolog_associated_gene_name
## 1674 ojavanicus_homolog_ensembl_peptide
## 1675 ojavanicus_homolog_chromosome
## 1676 ojavanicus_homolog_chrom_start
## 1677 ojavanicus_homolog_chrom_end
## 1678 ojavanicus_homolog_canonical_transcript_protein
## 1679 ojavanicus_homolog_subtype
## 1680 ojavanicus_homolog_orthology_type
## 1681 ojavanicus_homolog_perc_id
## 1682 ojavanicus_homolog_perc_id_r1
## 1683 ojavanicus_homolog_goc_score
## 1684 ojavanicus_homolog_wga_coverage
## 1685 ojavanicus_homolog_orthology_confidence
## 1686 shabroptila_homolog_ensembl_gene
## 1687 shabroptila_homolog_associated_gene_name
## 1688 shabroptila_homolog_ensembl_peptide
## 1689 shabroptila_homolog_chromosome
## 1690 shabroptila_homolog_chrom_start
## 1691 shabroptila_homolog_chrom_end
## 1692 shabroptila_homolog_canonical_transcript_protein
## 1693 shabroptila_homolog_subtype
## 1694 shabroptila_homolog_orthology_type
## 1695 shabroptila_homolog_perc_id
## 1696 shabroptila_homolog_perc_id_r1
## 1697 shabroptila_homolog_goc_score
## 1698 shabroptila_homolog_wga_coverage
## 1699 shabroptila_homolog_orthology_confidence
## 1700 dordii_homolog_ensembl_gene
## 1701 dordii_homolog_associated_gene_name
## 1702 dordii_homolog_ensembl_peptide
## 1703 dordii_homolog_chromosome
## 1704 dordii_homolog_chrom_start
## 1705 dordii_homolog_chrom_end
## 1706 dordii_homolog_canonical_transcript_protein
## 1707 dordii_homolog_subtype
## 1708 dordii_homolog_orthology_type
## 1709 dordii_homolog_perc_id
## 1710 dordii_homolog_perc_id_r1
## 1711 dordii_homolog_goc_score
## 1712 dordii_homolog_wga_coverage
## 1713 dordii_homolog_orthology_confidence
## 1714 pcinereus_homolog_ensembl_gene
## 1715 pcinereus_homolog_associated_gene_name
## 1716 pcinereus_homolog_ensembl_peptide
## 1717 pcinereus_homolog_chromosome
## 1718 pcinereus_homolog_chrom_start
## 1719 pcinereus_homolog_chrom_end
## 1720 pcinereus_homolog_canonical_transcript_protein
## 1721 pcinereus_homolog_subtype
## 1722 pcinereus_homolog_orthology_type
## 1723 pcinereus_homolog_perc_id
## 1724 pcinereus_homolog_perc_id_r1
## 1725 pcinereus_homolog_goc_score
## 1726 pcinereus_homolog_wga_coverage
## 1727 pcinereus_homolog_orthology_confidence
## 1728 pmarinus_homolog_ensembl_gene
## 1729 pmarinus_homolog_associated_gene_name
## 1730 pmarinus_homolog_ensembl_peptide
## 1731 pmarinus_homolog_chromosome
## 1732 pmarinus_homolog_chrom_start
## 1733 pmarinus_homolog_chrom_end
## 1734 pmarinus_homolog_canonical_transcript_protein
## 1735 pmarinus_homolog_subtype
## 1736 pmarinus_homolog_orthology_type
## 1737 pmarinus_homolog_perc_id
## 1738 pmarinus_homolog_perc_id_r1
## 1739 pmarinus_homolog_wga_coverage
## 1740 pmarinus_homolog_orthology_confidence
## 1741 lcrocea_homolog_ensembl_gene
## 1742 lcrocea_homolog_associated_gene_name
## 1743 lcrocea_homolog_ensembl_peptide
## 1744 lcrocea_homolog_chromosome
## 1745 lcrocea_homolog_chrom_start
## 1746 lcrocea_homolog_chrom_end
## 1747 lcrocea_homolog_canonical_transcript_protein
## 1748 lcrocea_homolog_subtype
## 1749 lcrocea_homolog_orthology_type
## 1750 lcrocea_homolog_perc_id
## 1751 lcrocea_homolog_perc_id_r1
## 1752 lcrocea_homolog_goc_score
## 1753 lcrocea_homolog_wga_coverage
## 1754 lcrocea_homolog_orthology_confidence
## 1755 lleishanense_homolog_ensembl_gene
## 1756 lleishanense_homolog_associated_gene_name
## 1757 lleishanense_homolog_ensembl_peptide
## 1758 lleishanense_homolog_chromosome
## 1759 lleishanense_homolog_chrom_start
## 1760 lleishanense_homolog_chrom_end
## 1761 lleishanense_homolog_canonical_transcript_protein
## 1762 lleishanense_homolog_subtype
## 1763 lleishanense_homolog_orthology_type
## 1764 lleishanense_homolog_perc_id
## 1765 lleishanense_homolog_perc_id_r1
## 1766 lleishanense_homolog_goc_score
## 1767 lleishanense_homolog_wga_coverage
## 1768 lleishanense_homolog_orthology_confidence
## 1769 ppardus_homolog_ensembl_gene
## 1770 ppardus_homolog_associated_gene_name
## 1771 ppardus_homolog_ensembl_peptide
## 1772 ppardus_homolog_chromosome
## 1773 ppardus_homolog_chrom_start
## 1774 ppardus_homolog_chrom_end
## 1775 ppardus_homolog_canonical_transcript_protein
## 1776 ppardus_homolog_subtype
## 1777 ppardus_homolog_orthology_type
## 1778 ppardus_homolog_perc_id
## 1779 ppardus_homolog_perc_id_r1
## 1780 ppardus_homolog_goc_score
## 1781 ppardus_homolog_wga_coverage
## 1782 ppardus_homolog_orthology_confidence
## 1783 jjaculus_homolog_ensembl_gene
## 1784 jjaculus_homolog_associated_gene_name
## 1785 jjaculus_homolog_ensembl_peptide
## 1786 jjaculus_homolog_chromosome
## 1787 jjaculus_homolog_chrom_start
## 1788 jjaculus_homolog_chrom_end
## 1789 jjaculus_homolog_canonical_transcript_protein
## 1790 jjaculus_homolog_subtype
## 1791 jjaculus_homolog_orthology_type
## 1792 jjaculus_homolog_perc_id
## 1793 jjaculus_homolog_perc_id_r1
## 1794 jjaculus_homolog_goc_score
## 1795 jjaculus_homolog_wga_coverage
## 1796 jjaculus_homolog_orthology_confidence
## 1797 etelfairi_homolog_ensembl_gene
## 1798 etelfairi_homolog_associated_gene_name
## 1799 etelfairi_homolog_ensembl_peptide
## 1800 etelfairi_homolog_chromosome
## 1801 etelfairi_homolog_chrom_start
## 1802 etelfairi_homolog_chrom_end
## 1803 etelfairi_homolog_canonical_transcript_protein
## 1804 etelfairi_homolog_subtype
## 1805 etelfairi_homolog_orthology_type
## 1806 etelfairi_homolog_perc_id
## 1807 etelfairi_homolog_perc_id_r1
## 1808 etelfairi_homolog_goc_score
## 1809 etelfairi_homolog_wga_coverage
## 1810 etelfairi_homolog_orthology_confidence
## 1811 pleo_homolog_ensembl_gene
## 1812 pleo_homolog_associated_gene_name
## 1813 pleo_homolog_ensembl_peptide
## 1814 pleo_homolog_chromosome
## 1815 pleo_homolog_chrom_start
## 1816 pleo_homolog_chrom_end
## 1817 pleo_homolog_canonical_transcript_protein
## 1818 pleo_homolog_subtype
## 1819 pleo_homolog_orthology_type
## 1820 pleo_homolog_perc_id
## 1821 pleo_homolog_perc_id_r1
## 1822 pleo_homolog_goc_score
## 1823 pleo_homolog_wga_coverage
## 1824 pleo_homolog_orthology_confidence
## 1825 clanigera_homolog_ensembl_gene
## 1826 clanigera_homolog_associated_gene_name
## 1827 clanigera_homolog_ensembl_peptide
## 1828 clanigera_homolog_chromosome
## 1829 clanigera_homolog_chrom_start
## 1830 clanigera_homolog_chrom_end
## 1831 clanigera_homolog_canonical_transcript_protein
## 1832 clanigera_homolog_subtype
## 1833 clanigera_homolog_orthology_type
## 1834 clanigera_homolog_perc_id
## 1835 clanigera_homolog_perc_id_r1
## 1836 clanigera_homolog_goc_score
## 1837 clanigera_homolog_wga_coverage
## 1838 clanigera_homolog_orthology_confidence
## 1839 clumpus_homolog_ensembl_gene
## 1840 clumpus_homolog_associated_gene_name
## 1841 clumpus_homolog_ensembl_peptide
## 1842 clumpus_homolog_chromosome
## 1843 clumpus_homolog_chrom_start
## 1844 clumpus_homolog_chrom_end
## 1845 clumpus_homolog_canonical_transcript_protein
## 1846 clumpus_homolog_subtype
## 1847 clumpus_homolog_orthology_type
## 1848 clumpus_homolog_perc_id
## 1849 clumpus_homolog_perc_id_r1
## 1850 clumpus_homolog_goc_score
## 1851 clumpus_homolog_wga_coverage
## 1852 clumpus_homolog_orthology_confidence
## 1853 nbrichardi_homolog_ensembl_gene
## 1854 nbrichardi_homolog_associated_gene_name
## 1855 nbrichardi_homolog_ensembl_peptide
## 1856 nbrichardi_homolog_chromosome
## 1857 nbrichardi_homolog_chrom_start
## 1858 nbrichardi_homolog_chrom_end
## 1859 nbrichardi_homolog_canonical_transcript_protein
## 1860 nbrichardi_homolog_subtype
## 1861 nbrichardi_homolog_orthology_type
## 1862 nbrichardi_homolog_perc_id
## 1863 nbrichardi_homolog_perc_id_r1
## 1864 nbrichardi_homolog_goc_score
## 1865 nbrichardi_homolog_wga_coverage
## 1866 nbrichardi_homolog_orthology_confidence
## 1867 anancymaae_homolog_ensembl_gene
## 1868 anancymaae_homolog_associated_gene_name
## 1869 anancymaae_homolog_ensembl_peptide
## 1870 anancymaae_homolog_chromosome
## 1871 anancymaae_homolog_chrom_start
## 1872 anancymaae_homolog_chrom_end
## 1873 anancymaae_homolog_canonical_transcript_protein
## 1874 anancymaae_homolog_subtype
## 1875 anancymaae_homolog_orthology_type
## 1876 anancymaae_homolog_perc_id
## 1877 anancymaae_homolog_perc_id_r1
## 1878 anancymaae_homolog_goc_score
## 1879 anancymaae_homolog_wga_coverage
## 1880 anancymaae_homolog_orthology_confidence
## 1881 mmulatta_homolog_ensembl_gene
## 1882 mmulatta_homolog_associated_gene_name
## 1883 mmulatta_homolog_ensembl_peptide
## 1884 mmulatta_homolog_chromosome
## 1885 mmulatta_homolog_chrom_start
## 1886 mmulatta_homolog_chrom_end
## 1887 mmulatta_homolog_canonical_transcript_protein
## 1888 mmulatta_homolog_subtype
## 1889 mmulatta_homolog_orthology_type
## 1890 mmulatta_homolog_perc_id
## 1891 mmulatta_homolog_perc_id_r1
## 1892 mmulatta_homolog_goc_score
## 1893 mmulatta_homolog_wga_coverage
## 1894 mmulatta_homolog_orthology_confidence
## 1895 nscutatus_homolog_ensembl_gene
## 1896 nscutatus_homolog_associated_gene_name
## 1897 nscutatus_homolog_ensembl_peptide
## 1898 nscutatus_homolog_chromosome
## 1899 nscutatus_homolog_chrom_start
## 1900 nscutatus_homolog_chrom_end
## 1901 nscutatus_homolog_canonical_transcript_protein
## 1902 nscutatus_homolog_subtype
## 1903 nscutatus_homolog_orthology_type
## 1904 nscutatus_homolog_perc_id
## 1905 nscutatus_homolog_perc_id_r1
## 1906 nscutatus_homolog_goc_score
## 1907 nscutatus_homolog_wga_coverage
## 1908 nscutatus_homolog_orthology_confidence
## 1909 pnyererei_homolog_ensembl_gene
## 1910 pnyererei_homolog_associated_gene_name
## 1911 pnyererei_homolog_ensembl_peptide
## 1912 pnyererei_homolog_chromosome
## 1913 pnyererei_homolog_chrom_start
## 1914 pnyererei_homolog_chrom_end
## 1915 pnyererei_homolog_canonical_transcript_protein
## 1916 pnyererei_homolog_subtype
## 1917 pnyererei_homolog_orthology_type
## 1918 pnyererei_homolog_perc_id
## 1919 pnyererei_homolog_perc_id_r1
## 1920 pnyererei_homolog_goc_score
## 1921 pnyererei_homolog_wga_coverage
## 1922 pnyererei_homolog_orthology_confidence
## 1923 kmarmoratus_homolog_ensembl_gene
## 1924 kmarmoratus_homolog_associated_gene_name
## 1925 kmarmoratus_homolog_ensembl_peptide
## 1926 kmarmoratus_homolog_chromosome
## 1927 kmarmoratus_homolog_chrom_start
## 1928 kmarmoratus_homolog_chrom_end
## 1929 kmarmoratus_homolog_canonical_transcript_protein
## 1930 kmarmoratus_homolog_subtype
## 1931 kmarmoratus_homolog_orthology_type
## 1932 kmarmoratus_homolog_perc_id
## 1933 kmarmoratus_homolog_perc_id_r1
## 1934 kmarmoratus_homolog_goc_score
## 1935 kmarmoratus_homolog_wga_coverage
## 1936 kmarmoratus_homolog_orthology_confidence
## 1937 gfortis_homolog_ensembl_gene
## 1938 gfortis_homolog_associated_gene_name
## 1939 gfortis_homolog_ensembl_peptide
## 1940 gfortis_homolog_chromosome
## 1941 gfortis_homolog_chrom_start
## 1942 gfortis_homolog_chrom_end
## 1943 gfortis_homolog_canonical_transcript_protein
## 1944 gfortis_homolog_subtype
## 1945 gfortis_homolog_orthology_type
## 1946 gfortis_homolog_perc_id
## 1947 gfortis_homolog_perc_id_r1
## 1948 gfortis_homolog_goc_score
## 1949 gfortis_homolog_wga_coverage
## 1950 gfortis_homolog_orthology_confidence
## 1951 pvampyrus_homolog_ensembl_gene
## 1952 pvampyrus_homolog_associated_gene_name
## 1953 pvampyrus_homolog_ensembl_peptide
## 1954 pvampyrus_homolog_chromosome
## 1955 pvampyrus_homolog_chrom_start
## 1956 pvampyrus_homolog_chrom_end
## 1957 pvampyrus_homolog_canonical_transcript_protein
## 1958 pvampyrus_homolog_subtype
## 1959 pvampyrus_homolog_orthology_type
## 1960 pvampyrus_homolog_perc_id
## 1961 pvampyrus_homolog_perc_id_r1
## 1962 pvampyrus_homolog_goc_score
## 1963 pvampyrus_homolog_wga_coverage
## 1964 pvampyrus_homolog_orthology_confidence
## 1965 amexicanus_homolog_ensembl_gene
## 1966 amexicanus_homolog_associated_gene_name
## 1967 amexicanus_homolog_ensembl_peptide
## 1968 amexicanus_homolog_chromosome
## 1969 amexicanus_homolog_chrom_start
## 1970 amexicanus_homolog_chrom_end
## 1971 amexicanus_homolog_canonical_transcript_protein
## 1972 amexicanus_homolog_subtype
## 1973 amexicanus_homolog_orthology_type
## 1974 amexicanus_homolog_perc_id
## 1975 amexicanus_homolog_perc_id_r1
## 1976 amexicanus_homolog_goc_score
## 1977 amexicanus_homolog_wga_coverage
## 1978 amexicanus_homolog_orthology_confidence
## 1979 mlucifugus_homolog_ensembl_gene
## 1980 mlucifugus_homolog_associated_gene_name
## 1981 mlucifugus_homolog_ensembl_peptide
## 1982 mlucifugus_homolog_chromosome
## 1983 mlucifugus_homolog_chrom_start
## 1984 mlucifugus_homolog_chrom_end
## 1985 mlucifugus_homolog_canonical_transcript_protein
## 1986 mlucifugus_homolog_subtype
## 1987 mlucifugus_homolog_orthology_type
## 1988 mlucifugus_homolog_perc_id
## 1989 mlucifugus_homolog_perc_id_r1
## 1990 mlucifugus_homolog_goc_score
## 1991 mlucifugus_homolog_wga_coverage
## 1992 mlucifugus_homolog_orthology_confidence
## 1993 acitrinellus_homolog_ensembl_gene
## 1994 acitrinellus_homolog_associated_gene_name
## 1995 acitrinellus_homolog_ensembl_peptide
## 1996 acitrinellus_homolog_chromosome
## 1997 acitrinellus_homolog_chrom_start
## 1998 acitrinellus_homolog_chrom_end
## 1999 acitrinellus_homolog_canonical_transcript_protein
## 2000 acitrinellus_homolog_subtype
## 2001 acitrinellus_homolog_orthology_type
## 2002 acitrinellus_homolog_perc_id
## 2003 acitrinellus_homolog_perc_id_r1
## 2004 acitrinellus_homolog_goc_score
## 2005 acitrinellus_homolog_wga_coverage
## 2006 acitrinellus_homolog_orthology_confidence
## 2007 mmusculus_homolog_ensembl_gene
## 2008 mmusculus_homolog_associated_gene_name
## 2009 mmusculus_homolog_ensembl_peptide
## 2010 mmusculus_homolog_chromosome
## 2011 mmusculus_homolog_chrom_start
## 2012 mmusculus_homolog_chrom_end
## 2013 mmusculus_homolog_canonical_transcript_protein
## 2014 mmusculus_homolog_subtype
## 2015 mmusculus_homolog_orthology_type
## 2016 mmusculus_homolog_perc_id
## 2017 mmusculus_homolog_perc_id_r1
## 2018 mmusculus_homolog_goc_score
## 2019 mmusculus_homolog_wga_coverage
## 2020 mmusculus_homolog_orthology_confidence
## 2021 mmurinus_homolog_ensembl_gene
## 2022 mmurinus_homolog_associated_gene_name
## 2023 mmurinus_homolog_ensembl_peptide
## 2024 mmurinus_homolog_chromosome
## 2025 mmurinus_homolog_chrom_start
## 2026 mmurinus_homolog_chrom_end
## 2027 mmurinus_homolog_canonical_transcript_protein
## 2028 mmurinus_homolog_subtype
## 2029 mmurinus_homolog_orthology_type
## 2030 mmurinus_homolog_perc_id
## 2031 mmurinus_homolog_perc_id_r1
## 2032 mmurinus_homolog_goc_score
## 2033 mmurinus_homolog_wga_coverage
## 2034 mmurinus_homolog_orthology_confidence
## 2035 fheteroclitus_homolog_ensembl_gene
## 2036 fheteroclitus_homolog_associated_gene_name
## 2037 fheteroclitus_homolog_ensembl_peptide
## 2038 fheteroclitus_homolog_chromosome
## 2039 fheteroclitus_homolog_chrom_start
## 2040 fheteroclitus_homolog_chrom_end
## 2041 fheteroclitus_homolog_canonical_transcript_protein
## 2042 fheteroclitus_homolog_subtype
## 2043 fheteroclitus_homolog_orthology_type
## 2044 fheteroclitus_homolog_perc_id
## 2045 fheteroclitus_homolog_perc_id_r1
## 2046 fheteroclitus_homolog_goc_score
## 2047 fheteroclitus_homolog_wga_coverage
## 2048 fheteroclitus_homolog_orthology_confidence
## 2049 hgfemale_homolog_ensembl_gene
## 2050 hgfemale_homolog_associated_gene_name
## 2051 hgfemale_homolog_ensembl_peptide
## 2052 hgfemale_homolog_chromosome
## 2053 hgfemale_homolog_chrom_start
## 2054 hgfemale_homolog_chrom_end
## 2055 hgfemale_homolog_canonical_transcript_protein
## 2056 hgfemale_homolog_subtype
## 2057 hgfemale_homolog_orthology_type
## 2058 hgfemale_homolog_perc_id
## 2059 hgfemale_homolog_perc_id_r1
## 2060 hgfemale_homolog_goc_score
## 2061 hgfemale_homolog_wga_coverage
## 2062 hgfemale_homolog_orthology_confidence
## 2063 mmonoceros_homolog_ensembl_gene
## 2064 mmonoceros_homolog_associated_gene_name
## 2065 mmonoceros_homolog_ensembl_peptide
## 2066 mmonoceros_homolog_chromosome
## 2067 mmonoceros_homolog_chrom_start
## 2068 mmonoceros_homolog_chrom_end
## 2069 mmonoceros_homolog_canonical_transcript_protein
## 2070 mmonoceros_homolog_subtype
## 2071 mmonoceros_homolog_orthology_type
## 2072 mmonoceros_homolog_perc_id
## 2073 mmonoceros_homolog_perc_id_r1
## 2074 mmonoceros_homolog_goc_score
## 2075 mmonoceros_homolog_wga_coverage
## 2076 mmonoceros_homolog_orthology_confidence
## 2077 oniloticus_homolog_ensembl_gene
## 2078 oniloticus_homolog_associated_gene_name
## 2079 oniloticus_homolog_ensembl_peptide
## 2080 oniloticus_homolog_chromosome
## 2081 oniloticus_homolog_chrom_start
## 2082 oniloticus_homolog_chrom_end
## 2083 oniloticus_homolog_canonical_transcript_protein
## 2084 oniloticus_homolog_subtype
## 2085 oniloticus_homolog_orthology_type
## 2086 oniloticus_homolog_perc_id
## 2087 oniloticus_homolog_perc_id_r1
## 2088 oniloticus_homolog_goc_score
## 2089 oniloticus_homolog_wga_coverage
## 2090 oniloticus_homolog_orthology_confidence
## 2091 pmbairdii_homolog_ensembl_gene
## 2092 pmbairdii_homolog_associated_gene_name
## 2093 pmbairdii_homolog_ensembl_peptide
## 2094 pmbairdii_homolog_chromosome
## 2095 pmbairdii_homolog_chrom_start
## 2096 pmbairdii_homolog_chrom_end
## 2097 pmbairdii_homolog_canonical_transcript_protein
## 2098 pmbairdii_homolog_subtype
## 2099 pmbairdii_homolog_orthology_type
## 2100 pmbairdii_homolog_perc_id
## 2101 pmbairdii_homolog_perc_id_r1
## 2102 pmbairdii_homolog_goc_score
## 2103 pmbairdii_homolog_wga_coverage
## 2104 pmbairdii_homolog_orthology_confidence
## 2105 elucius_homolog_ensembl_gene
## 2106 elucius_homolog_associated_gene_name
## 2107 elucius_homolog_ensembl_peptide
## 2108 elucius_homolog_chromosome
## 2109 elucius_homolog_chrom_start
## 2110 elucius_homolog_chrom_end
## 2111 elucius_homolog_canonical_transcript_protein
## 2112 elucius_homolog_subtype
## 2113 elucius_homolog_orthology_type
## 2114 elucius_homolog_perc_id
## 2115 elucius_homolog_perc_id_r1
## 2116 elucius_homolog_goc_score
## 2117 elucius_homolog_wga_coverage
## 2118 elucius_homolog_orthology_confidence
## 2119 panubis_homolog_ensembl_gene
## 2120 panubis_homolog_associated_gene_name
## 2121 panubis_homolog_ensembl_peptide
## 2122 panubis_homolog_chromosome
## 2123 panubis_homolog_chrom_start
## 2124 panubis_homolog_chrom_end
## 2125 panubis_homolog_canonical_transcript_protein
## 2126 panubis_homolog_subtype
## 2127 panubis_homolog_orthology_type
## 2128 panubis_homolog_perc_id
## 2129 panubis_homolog_perc_id_r1
## 2130 panubis_homolog_goc_score
## 2131 panubis_homolog_wga_coverage
## 2132 panubis_homolog_orthology_confidence
## 2133 mdomestica_homolog_ensembl_gene
## 2134 mdomestica_homolog_associated_gene_name
## 2135 mdomestica_homolog_ensembl_peptide
## 2136 mdomestica_homolog_chromosome
## 2137 mdomestica_homolog_chrom_start
## 2138 mdomestica_homolog_chrom_end
## 2139 mdomestica_homolog_canonical_transcript_protein
## 2140 mdomestica_homolog_subtype
## 2141 mdomestica_homolog_orthology_type
## 2142 mdomestica_homolog_perc_id
## 2143 mdomestica_homolog_perc_id_r1
## 2144 mdomestica_homolog_goc_score
## 2145 mdomestica_homolog_wga_coverage
## 2146 mdomestica_homolog_orthology_confidence
## 2147 apercula_homolog_ensembl_gene
## 2148 apercula_homolog_associated_gene_name
## 2149 apercula_homolog_ensembl_peptide
## 2150 apercula_homolog_chromosome
## 2151 apercula_homolog_chrom_start
## 2152 apercula_homolog_chrom_end
## 2153 apercula_homolog_canonical_transcript_protein
## 2154 apercula_homolog_subtype
## 2155 apercula_homolog_orthology_type
## 2156 apercula_homolog_perc_id
## 2157 apercula_homolog_perc_id_r1
## 2158 apercula_homolog_goc_score
## 2159 apercula_homolog_wga_coverage
## 2160 apercula_homolog_orthology_confidence
## 2161 cpbellii_homolog_ensembl_gene
## 2162 cpbellii_homolog_associated_gene_name
## 2163 cpbellii_homolog_ensembl_peptide
## 2164 cpbellii_homolog_chromosome
## 2165 cpbellii_homolog_chrom_start
## 2166 cpbellii_homolog_chrom_end
## 2167 cpbellii_homolog_canonical_transcript_protein
## 2168 cpbellii_homolog_subtype
## 2169 cpbellii_homolog_orthology_type
## 2170 cpbellii_homolog_perc_id
## 2171 cpbellii_homolog_perc_id_r1
## 2172 cpbellii_homolog_goc_score
## 2173 cpbellii_homolog_wga_coverage
## 2174 cpbellii_homolog_orthology_confidence
## 2175 pkingsleyae_homolog_ensembl_gene
## 2176 pkingsleyae_homolog_associated_gene_name
## 2177 pkingsleyae_homolog_ensembl_peptide
## 2178 pkingsleyae_homolog_chromosome
## 2179 pkingsleyae_homolog_chrom_start
## 2180 pkingsleyae_homolog_chrom_end
## 2181 pkingsleyae_homolog_canonical_transcript_protein
## 2182 pkingsleyae_homolog_subtype
## 2183 pkingsleyae_homolog_orthology_type
## 2184 pkingsleyae_homolog_perc_id
## 2185 pkingsleyae_homolog_perc_id_r1
## 2186 pkingsleyae_homolog_goc_score
## 2187 pkingsleyae_homolog_wga_coverage
## 2188 pkingsleyae_homolog_orthology_confidence
## 2189 sscrofa_homolog_ensembl_gene
## 2190 sscrofa_homolog_associated_gene_name
## 2191 sscrofa_homolog_ensembl_peptide
## 2192 sscrofa_homolog_chromosome
## 2193 sscrofa_homolog_chrom_start
## 2194 sscrofa_homolog_chrom_end
## 2195 sscrofa_homolog_canonical_transcript_protein
## 2196 sscrofa_homolog_subtype
## 2197 sscrofa_homolog_orthology_type
## 2198 sscrofa_homolog_perc_id
## 2199 sscrofa_homolog_perc_id_r1
## 2200 sscrofa_homolog_goc_score
## 2201 sscrofa_homolog_wga_coverage
## 2202 sscrofa_homolog_orthology_confidence
## 2203 mnemestrina_homolog_ensembl_gene
## 2204 mnemestrina_homolog_associated_gene_name
## 2205 mnemestrina_homolog_ensembl_peptide
## 2206 mnemestrina_homolog_chromosome
## 2207 mnemestrina_homolog_chrom_start
## 2208 mnemestrina_homolog_chrom_end
## 2209 mnemestrina_homolog_canonical_transcript_protein
## 2210 mnemestrina_homolog_subtype
## 2211 mnemestrina_homolog_orthology_type
## 2212 mnemestrina_homolog_perc_id
## 2213 mnemestrina_homolog_perc_id_r1
## 2214 mnemestrina_homolog_goc_score
## 2215 mnemestrina_homolog_wga_coverage
## 2216 mnemestrina_homolog_orthology_confidence
## 2217 oprinceps_homolog_ensembl_gene
## 2218 oprinceps_homolog_associated_gene_name
## 2219 oprinceps_homolog_ensembl_peptide
## 2220 oprinceps_homolog_chromosome
## 2221 oprinceps_homolog_chrom_start
## 2222 oprinceps_homolog_chrom_end
## 2223 oprinceps_homolog_canonical_transcript_protein
## 2224 oprinceps_homolog_subtype
## 2225 oprinceps_homolog_orthology_type
## 2226 oprinceps_homolog_perc_id
## 2227 oprinceps_homolog_perc_id_r1
## 2228 oprinceps_homolog_goc_score
## 2229 oprinceps_homolog_wga_coverage
## 2230 oprinceps_homolog_orthology_confidence
## 2231 slucioperca_homolog_ensembl_gene
## 2232 slucioperca_homolog_associated_gene_name
## 2233 slucioperca_homolog_ensembl_peptide
## 2234 slucioperca_homolog_chromosome
## 2235 slucioperca_homolog_chrom_start
## 2236 slucioperca_homolog_chrom_end
## 2237 slucioperca_homolog_canonical_transcript_protein
## 2238 slucioperca_homolog_subtype
## 2239 slucioperca_homolog_orthology_type
## 2240 slucioperca_homolog_perc_id
## 2241 slucioperca_homolog_perc_id_r1
## 2242 slucioperca_homolog_goc_score
## 2243 slucioperca_homolog_wga_coverage
## 2244 slucioperca_homolog_orthology_confidence
## 2245 mmurdjan_homolog_ensembl_gene
## 2246 mmurdjan_homolog_associated_gene_name
## 2247 mmurdjan_homolog_ensembl_peptide
## 2248 mmurdjan_homolog_chromosome
## 2249 mmurdjan_homolog_chrom_start
## 2250 mmurdjan_homolog_chrom_end
## 2251 mmurdjan_homolog_canonical_transcript_protein
## 2252 mmurdjan_homolog_subtype
## 2253 mmurdjan_homolog_orthology_type
## 2254 mmurdjan_homolog_perc_id
## 2255 mmurdjan_homolog_perc_id_r1
## 2256 mmurdjan_homolog_goc_score
## 2257 mmurdjan_homolog_wga_coverage
## 2258 mmurdjan_homolog_orthology_confidence
## 2259 abrachyrhynchus_homolog_ensembl_gene
## 2260 abrachyrhynchus_homolog_associated_gene_name
## 2261 abrachyrhynchus_homolog_ensembl_peptide
## 2262 abrachyrhynchus_homolog_chromosome
## 2263 abrachyrhynchus_homolog_chrom_start
## 2264 abrachyrhynchus_homolog_chrom_end
## 2265 abrachyrhynchus_homolog_canonical_transcript_protein
## 2266 abrachyrhynchus_homolog_subtype
## 2267 abrachyrhynchus_homolog_orthology_type
## 2268 abrachyrhynchus_homolog_perc_id
## 2269 abrachyrhynchus_homolog_perc_id_r1
## 2270 abrachyrhynchus_homolog_goc_score
## 2271 abrachyrhynchus_homolog_wga_coverage
## 2272 abrachyrhynchus_homolog_orthology_confidence
## 2273 xmaculatus_homolog_ensembl_gene
## 2274 xmaculatus_homolog_associated_gene_name
## 2275 xmaculatus_homolog_ensembl_peptide
## 2276 xmaculatus_homolog_chromosome
## 2277 xmaculatus_homolog_chrom_start
## 2278 xmaculatus_homolog_chrom_end
## 2279 xmaculatus_homolog_canonical_transcript_protein
## 2280 xmaculatus_homolog_subtype
## 2281 xmaculatus_homolog_orthology_type
## 2282 xmaculatus_homolog_perc_id
## 2283 xmaculatus_homolog_perc_id_r1
## 2284 xmaculatus_homolog_goc_score
## 2285 xmaculatus_homolog_wga_coverage
## 2286 xmaculatus_homolog_orthology_confidence
## 2287 oanatinus_homolog_ensembl_gene
## 2288 oanatinus_homolog_associated_gene_name
## 2289 oanatinus_homolog_ensembl_peptide
## 2290 oanatinus_homolog_chromosome
## 2291 oanatinus_homolog_chrom_start
## 2292 oanatinus_homolog_chrom_end
## 2293 oanatinus_homolog_canonical_transcript_protein
## 2294 oanatinus_homolog_subtype
## 2295 oanatinus_homolog_orthology_type
## 2296 oanatinus_homolog_perc_id
## 2297 oanatinus_homolog_perc_id_r1
## 2298 oanatinus_homolog_goc_score
## 2299 oanatinus_homolog_wga_coverage
## 2300 oanatinus_homolog_orthology_confidence
## 2301 umaritimus_homolog_ensembl_gene
## 2302 umaritimus_homolog_associated_gene_name
## 2303 umaritimus_homolog_ensembl_peptide
## 2304 umaritimus_homolog_chromosome
## 2305 umaritimus_homolog_chrom_start
## 2306 umaritimus_homolog_chrom_end
## 2307 umaritimus_homolog_canonical_transcript_protein
## 2308 umaritimus_homolog_subtype
## 2309 umaritimus_homolog_orthology_type
## 2310 umaritimus_homolog_perc_id
## 2311 umaritimus_homolog_perc_id_r1
## 2312 umaritimus_homolog_goc_score
## 2313 umaritimus_homolog_wga_coverage
## 2314 umaritimus_homolog_orthology_confidence
## 2315 mochrogaster_homolog_ensembl_gene
## 2316 mochrogaster_homolog_associated_gene_name
## 2317 mochrogaster_homolog_ensembl_peptide
## 2318 mochrogaster_homolog_chromosome
## 2319 mochrogaster_homolog_chrom_start
## 2320 mochrogaster_homolog_chrom_end
## 2321 mochrogaster_homolog_canonical_transcript_protein
## 2322 mochrogaster_homolog_subtype
## 2323 mochrogaster_homolog_orthology_type
## 2324 mochrogaster_homolog_perc_id
## 2325 mochrogaster_homolog_perc_id_r1
## 2326 mochrogaster_homolog_goc_score
## 2327 mochrogaster_homolog_wga_coverage
## 2328 mochrogaster_homolog_orthology_confidence
## 2329 ocuniculus_homolog_ensembl_gene
## 2330 ocuniculus_homolog_associated_gene_name
## 2331 ocuniculus_homolog_ensembl_peptide
## 2332 ocuniculus_homolog_chromosome
## 2333 ocuniculus_homolog_chrom_start
## 2334 ocuniculus_homolog_chrom_end
## 2335 ocuniculus_homolog_canonical_transcript_protein
## 2336 ocuniculus_homolog_subtype
## 2337 ocuniculus_homolog_orthology_type
## 2338 ocuniculus_homolog_perc_id
## 2339 ocuniculus_homolog_perc_id_r1
## 2340 ocuniculus_homolog_goc_score
## 2341 ocuniculus_homolog_wga_coverage
## 2342 ocuniculus_homolog_orthology_confidence
## 2343 omykiss_homolog_ensembl_gene
## 2344 omykiss_homolog_associated_gene_name
## 2345 omykiss_homolog_ensembl_peptide
## 2346 omykiss_homolog_chromosome
## 2347 omykiss_homolog_chrom_start
## 2348 omykiss_homolog_chrom_end
## 2349 omykiss_homolog_canonical_transcript_protein
## 2350 omykiss_homolog_subtype
## 2351 omykiss_homolog_orthology_type
## 2352 omykiss_homolog_perc_id
## 2353 omykiss_homolog_perc_id_r1
## 2354 omykiss_homolog_goc_score
## 2355 omykiss_homolog_orthology_confidence
## 2356 rnorvegicus_homolog_ensembl_gene
## 2357 rnorvegicus_homolog_associated_gene_name
## 2358 rnorvegicus_homolog_ensembl_peptide
## 2359 rnorvegicus_homolog_chromosome
## 2360 rnorvegicus_homolog_chrom_start
## 2361 rnorvegicus_homolog_chrom_end
## 2362 rnorvegicus_homolog_canonical_transcript_protein
## 2363 rnorvegicus_homolog_subtype
## 2364 rnorvegicus_homolog_orthology_type
## 2365 rnorvegicus_homolog_perc_id
## 2366 rnorvegicus_homolog_perc_id_r1
## 2367 rnorvegicus_homolog_goc_score
## 2368 rnorvegicus_homolog_wga_coverage
## 2369 rnorvegicus_homolog_orthology_confidence
## 2370 vvulpes_homolog_ensembl_gene
## 2371 vvulpes_homolog_associated_gene_name
## 2372 vvulpes_homolog_ensembl_peptide
## 2373 vvulpes_homolog_chromosome
## 2374 vvulpes_homolog_chrom_start
## 2375 vvulpes_homolog_chrom_end
## 2376 vvulpes_homolog_canonical_transcript_protein
## 2377 vvulpes_homolog_subtype
## 2378 vvulpes_homolog_orthology_type
## 2379 vvulpes_homolog_perc_id
## 2380 vvulpes_homolog_perc_id_r1
## 2381 vvulpes_homolog_goc_score
## 2382 vvulpes_homolog_wga_coverage
## 2383 vvulpes_homolog_orthology_confidence
## 2384 pnattereri_homolog_ensembl_gene
## 2385 pnattereri_homolog_associated_gene_name
## 2386 pnattereri_homolog_ensembl_peptide
## 2387 pnattereri_homolog_chromosome
## 2388 pnattereri_homolog_chrom_start
## 2389 pnattereri_homolog_chrom_end
## 2390 pnattereri_homolog_canonical_transcript_protein
## 2391 pnattereri_homolog_subtype
## 2392 pnattereri_homolog_orthology_type
## 2393 pnattereri_homolog_perc_id
## 2394 pnattereri_homolog_perc_id_r1
## 2395 pnattereri_homolog_goc_score
## 2396 pnattereri_homolog_wga_coverage
## 2397 pnattereri_homolog_orthology_confidence
## 2398 ecalabaricus_homolog_ensembl_gene
## 2399 ecalabaricus_homolog_associated_gene_name
## 2400 ecalabaricus_homolog_ensembl_peptide
## 2401 ecalabaricus_homolog_chromosome
## 2402 ecalabaricus_homolog_chrom_start
## 2403 ecalabaricus_homolog_chrom_end
## 2404 ecalabaricus_homolog_canonical_transcript_protein
## 2405 ecalabaricus_homolog_subtype
## 2406 ecalabaricus_homolog_orthology_type
## 2407 ecalabaricus_homolog_perc_id
## 2408 ecalabaricus_homolog_perc_id_r1
## 2409 ecalabaricus_homolog_goc_score
## 2410 ecalabaricus_homolog_wga_coverage
## 2411 ecalabaricus_homolog_orthology_confidence
## 2412 mcaroli_homolog_ensembl_gene
## 2413 mcaroli_homolog_associated_gene_name
## 2414 mcaroli_homolog_ensembl_peptide
## 2415 mcaroli_homolog_chromosome
## 2416 mcaroli_homolog_chrom_start
## 2417 mcaroli_homolog_chrom_end
## 2418 mcaroli_homolog_canonical_transcript_protein
## 2419 mcaroli_homolog_subtype
## 2420 mcaroli_homolog_orthology_type
## 2421 mcaroli_homolog_perc_id
## 2422 mcaroli_homolog_perc_id_r1
## 2423 mcaroli_homolog_goc_score
## 2424 mcaroli_homolog_wga_coverage
## 2425 mcaroli_homolog_orthology_confidence
## 2426 scerevisiae_homolog_ensembl_gene
## 2427 scerevisiae_homolog_associated_gene_name
## 2428 scerevisiae_homolog_ensembl_peptide
## 2429 scerevisiae_homolog_chromosome
## 2430 scerevisiae_homolog_chrom_start
## 2431 scerevisiae_homolog_chrom_end
## 2432 scerevisiae_homolog_canonical_transcript_protein
## 2433 scerevisiae_homolog_subtype
## 2434 scerevisiae_homolog_orthology_type
## 2435 scerevisiae_homolog_perc_id
## 2436 scerevisiae_homolog_perc_id_r1
## 2437 scerevisiae_homolog_orthology_confidence
## 2438 platipinna_homolog_ensembl_gene
## 2439 platipinna_homolog_associated_gene_name
## 2440 platipinna_homolog_ensembl_peptide
## 2441 platipinna_homolog_chromosome
## 2442 platipinna_homolog_chrom_start
## 2443 platipinna_homolog_chrom_end
## 2444 platipinna_homolog_canonical_transcript_protein
## 2445 platipinna_homolog_subtype
## 2446 platipinna_homolog_orthology_type
## 2447 platipinna_homolog_perc_id
## 2448 platipinna_homolog_perc_id_r1
## 2449 platipinna_homolog_goc_score
## 2450 platipinna_homolog_wga_coverage
## 2451 platipinna_homolog_orthology_confidence
## 2452 oarambouillet_homolog_ensembl_gene
## 2453 oarambouillet_homolog_associated_gene_name
## 2454 oarambouillet_homolog_ensembl_peptide
## 2455 oarambouillet_homolog_chromosome
## 2456 oarambouillet_homolog_chrom_start
## 2457 oarambouillet_homolog_chrom_end
## 2458 oarambouillet_homolog_canonical_transcript_protein
## 2459 oarambouillet_homolog_subtype
## 2460 oarambouillet_homolog_orthology_type
## 2461 oarambouillet_homolog_perc_id
## 2462 oarambouillet_homolog_perc_id_r1
## 2463 oarambouillet_homolog_goc_score
## 2464 oarambouillet_homolog_wga_coverage
## 2465 oarambouillet_homolog_orthology_confidence
## 2466 cvariegatus_homolog_ensembl_gene
## 2467 cvariegatus_homolog_associated_gene_name
## 2468 cvariegatus_homolog_ensembl_peptide
## 2469 cvariegatus_homolog_chromosome
## 2470 cvariegatus_homolog_chrom_start
## 2471 cvariegatus_homolog_chrom_end
## 2472 cvariegatus_homolog_canonical_transcript_protein
## 2473 cvariegatus_homolog_subtype
## 2474 cvariegatus_homolog_orthology_type
## 2475 cvariegatus_homolog_perc_id
## 2476 cvariegatus_homolog_perc_id_r1
## 2477 cvariegatus_homolog_goc_score
## 2478 cvariegatus_homolog_wga_coverage
## 2479 cvariegatus_homolog_orthology_confidence
## 2480 saraneus_homolog_ensembl_gene
## 2481 saraneus_homolog_associated_gene_name
## 2482 saraneus_homolog_ensembl_peptide
## 2483 saraneus_homolog_chromosome
## 2484 saraneus_homolog_chrom_start
## 2485 saraneus_homolog_chrom_end
## 2486 saraneus_homolog_canonical_transcript_protein
## 2487 saraneus_homolog_subtype
## 2488 saraneus_homolog_orthology_type
## 2489 saraneus_homolog_perc_id
## 2490 saraneus_homolog_perc_id_r1
## 2491 saraneus_homolog_goc_score
## 2492 saraneus_homolog_wga_coverage
## 2493 saraneus_homolog_orthology_confidence
## 2494 mpahari_homolog_ensembl_gene
## 2495 mpahari_homolog_associated_gene_name
## 2496 mpahari_homolog_ensembl_peptide
## 2497 mpahari_homolog_chromosome
## 2498 mpahari_homolog_chrom_start
## 2499 mpahari_homolog_chrom_end
## 2500 mpahari_homolog_canonical_transcript_protein
## 2501 mpahari_homolog_subtype
## 2502 mpahari_homolog_orthology_type
## 2503 mpahari_homolog_perc_id
## 2504 mpahari_homolog_perc_id_r1
## 2505 mpahari_homolog_goc_score
## 2506 mpahari_homolog_wga_coverage
## 2507 mpahari_homolog_orthology_confidence
## 2508 bsplendens_homolog_ensembl_gene
## 2509 bsplendens_homolog_associated_gene_name
## 2510 bsplendens_homolog_ensembl_peptide
## 2511 bsplendens_homolog_chromosome
## 2512 bsplendens_homolog_chrom_start
## 2513 bsplendens_homolog_chrom_end
## 2514 bsplendens_homolog_canonical_transcript_protein
## 2515 bsplendens_homolog_subtype
## 2516 bsplendens_homolog_orthology_type
## 2517 bsplendens_homolog_perc_id
## 2518 bsplendens_homolog_perc_id_r1
## 2519 bsplendens_homolog_goc_score
## 2520 bsplendens_homolog_wga_coverage
## 2521 bsplendens_homolog_orthology_confidence
## 2522 mmoschiferus_homolog_ensembl_gene
## 2523 mmoschiferus_homolog_associated_gene_name
## 2524 mmoschiferus_homolog_ensembl_peptide
## 2525 mmoschiferus_homolog_chromosome
## 2526 mmoschiferus_homolog_chrom_start
## 2527 mmoschiferus_homolog_chrom_end
## 2528 mmoschiferus_homolog_canonical_transcript_protein
## 2529 mmoschiferus_homolog_subtype
## 2530 mmoschiferus_homolog_orthology_type
## 2531 mmoschiferus_homolog_perc_id
## 2532 mmoschiferus_homolog_perc_id_r1
## 2533 mmoschiferus_homolog_goc_score
## 2534 mmoschiferus_homolog_wga_coverage
## 2535 mmoschiferus_homolog_orthology_confidence
## 2536 choffmanni_homolog_ensembl_gene
## 2537 choffmanni_homolog_associated_gene_name
## 2538 choffmanni_homolog_ensembl_peptide
## 2539 choffmanni_homolog_chromosome
## 2540 choffmanni_homolog_chrom_start
## 2541 choffmanni_homolog_chrom_end
## 2542 choffmanni_homolog_canonical_transcript_protein
## 2543 choffmanni_homolog_subtype
## 2544 choffmanni_homolog_orthology_type
## 2545 choffmanni_homolog_perc_id
## 2546 choffmanni_homolog_perc_id_r1
## 2547 choffmanni_homolog_goc_score
## 2548 choffmanni_homolog_wga_coverage
## 2549 choffmanni_homolog_orthology_confidence
## 2550 catys_homolog_ensembl_gene
## 2551 catys_homolog_associated_gene_name
## 2552 catys_homolog_ensembl_peptide
## 2553 catys_homolog_chromosome
## 2554 catys_homolog_chrom_start
## 2555 catys_homolog_chrom_end
## 2556 catys_homolog_canonical_transcript_protein
## 2557 catys_homolog_subtype
## 2558 catys_homolog_orthology_type
## 2559 catys_homolog_perc_id
## 2560 catys_homolog_perc_id_r1
## 2561 catys_homolog_goc_score
## 2562 catys_homolog_wga_coverage
## 2563 catys_homolog_orthology_confidence
## 2564 pcatodon_homolog_ensembl_gene
## 2565 pcatodon_homolog_associated_gene_name
## 2566 pcatodon_homolog_ensembl_peptide
## 2567 pcatodon_homolog_chromosome
## 2568 pcatodon_homolog_chrom_start
## 2569 pcatodon_homolog_chrom_end
## 2570 pcatodon_homolog_canonical_transcript_protein
## 2571 pcatodon_homolog_subtype
## 2572 pcatodon_homolog_orthology_type
## 2573 pcatodon_homolog_perc_id
## 2574 pcatodon_homolog_perc_id_r1
## 2575 pcatodon_homolog_goc_score
## 2576 pcatodon_homolog_wga_coverage
## 2577 pcatodon_homolog_orthology_confidence
## 2578 apolyacanthus_homolog_ensembl_gene
## 2579 apolyacanthus_homolog_associated_gene_name
## 2580 apolyacanthus_homolog_ensembl_peptide
## 2581 apolyacanthus_homolog_chromosome
## 2582 apolyacanthus_homolog_chrom_start
## 2583 apolyacanthus_homolog_chrom_end
## 2584 apolyacanthus_homolog_canonical_transcript_protein
## 2585 apolyacanthus_homolog_subtype
## 2586 apolyacanthus_homolog_orthology_type
## 2587 apolyacanthus_homolog_perc_id
## 2588 apolyacanthus_homolog_perc_id_r1
## 2589 apolyacanthus_homolog_goc_score
## 2590 apolyacanthus_homolog_wga_coverage
## 2591 apolyacanthus_homolog_orthology_confidence
## 2592 loculatus_homolog_ensembl_gene
## 2593 loculatus_homolog_associated_gene_name
## 2594 loculatus_homolog_ensembl_peptide
## 2595 loculatus_homolog_chromosome
## 2596 loculatus_homolog_chrom_start
## 2597 loculatus_homolog_chrom_end
## 2598 loculatus_homolog_canonical_transcript_protein
## 2599 loculatus_homolog_subtype
## 2600 loculatus_homolog_orthology_type
## 2601 loculatus_homolog_perc_id
## 2602 loculatus_homolog_perc_id_r1
## 2603 loculatus_homolog_goc_score
## 2604 loculatus_homolog_wga_coverage
## 2605 loculatus_homolog_orthology_confidence
## 2606 itridecemlineatus_homolog_ensembl_gene
## 2607 itridecemlineatus_homolog_associated_gene_name
## 2608 itridecemlineatus_homolog_ensembl_peptide
## 2609 itridecemlineatus_homolog_chromosome
## 2610 itridecemlineatus_homolog_chrom_start
## 2611 itridecemlineatus_homolog_chrom_end
## 2612 itridecemlineatus_homolog_canonical_transcript_protein
## 2613 itridecemlineatus_homolog_subtype
## 2614 itridecemlineatus_homolog_orthology_type
## 2615 itridecemlineatus_homolog_perc_id
## 2616 itridecemlineatus_homolog_perc_id_r1
## 2617 itridecemlineatus_homolog_goc_score
## 2618 itridecemlineatus_homolog_wga_coverage
## 2619 itridecemlineatus_homolog_orthology_confidence
## 2620 mspicilegus_homolog_ensembl_gene
## 2621 mspicilegus_homolog_associated_gene_name
## 2622 mspicilegus_homolog_ensembl_peptide
## 2623 mspicilegus_homolog_chromosome
## 2624 mspicilegus_homolog_chrom_start
## 2625 mspicilegus_homolog_chrom_end
## 2626 mspicilegus_homolog_canonical_transcript_protein
## 2627 mspicilegus_homolog_subtype
## 2628 mspicilegus_homolog_orthology_type
## 2629 mspicilegus_homolog_perc_id
## 2630 mspicilegus_homolog_perc_id_r1
## 2631 mspicilegus_homolog_goc_score
## 2632 mspicilegus_homolog_wga_coverage
## 2633 mspicilegus_homolog_orthology_confidence
## 2634 gaculeatus_homolog_ensembl_gene
## 2635 gaculeatus_homolog_associated_gene_name
## 2636 gaculeatus_homolog_ensembl_peptide
## 2637 gaculeatus_homolog_chromosome
## 2638 gaculeatus_homolog_chrom_start
## 2639 gaculeatus_homolog_chrom_end
## 2640 gaculeatus_homolog_canonical_transcript_protein
## 2641 gaculeatus_homolog_subtype
## 2642 gaculeatus_homolog_orthology_type
## 2643 gaculeatus_homolog_perc_id
## 2644 gaculeatus_homolog_perc_id_r1
## 2645 gaculeatus_homolog_goc_score
## 2646 gaculeatus_homolog_wga_coverage
## 2647 gaculeatus_homolog_orthology_confidence
## 2648 pabelii_homolog_ensembl_gene
## 2649 pabelii_homolog_associated_gene_name
## 2650 pabelii_homolog_ensembl_peptide
## 2651 pabelii_homolog_chromosome
## 2652 pabelii_homolog_chrom_start
## 2653 pabelii_homolog_chrom_end
## 2654 pabelii_homolog_canonical_transcript_protein
## 2655 pabelii_homolog_subtype
## 2656 pabelii_homolog_orthology_type
## 2657 pabelii_homolog_perc_id
## 2658 pabelii_homolog_perc_id_r1
## 2659 pabelii_homolog_goc_score
## 2660 pabelii_homolog_wga_coverage
## 2661 pabelii_homolog_orthology_confidence
## 2662 csyrichta_homolog_ensembl_gene
## 2663 csyrichta_homolog_associated_gene_name
## 2664 csyrichta_homolog_ensembl_peptide
## 2665 csyrichta_homolog_chromosome
## 2666 csyrichta_homolog_chrom_start
## 2667 csyrichta_homolog_chrom_end
## 2668 csyrichta_homolog_canonical_transcript_protein
## 2669 csyrichta_homolog_subtype
## 2670 csyrichta_homolog_orthology_type
## 2671 csyrichta_homolog_perc_id
## 2672 csyrichta_homolog_perc_id_r1
## 2673 csyrichta_homolog_goc_score
## 2674 csyrichta_homolog_wga_coverage
## 2675 csyrichta_homolog_orthology_confidence
## 2676 sharrisii_homolog_ensembl_gene
## 2677 sharrisii_homolog_associated_gene_name
## 2678 sharrisii_homolog_ensembl_peptide
## 2679 sharrisii_homolog_chromosome
## 2680 sharrisii_homolog_chrom_start
## 2681 sharrisii_homolog_chrom_end
## 2682 sharrisii_homolog_canonical_transcript_protein
## 2683 sharrisii_homolog_subtype
## 2684 sharrisii_homolog_orthology_type
## 2685 sharrisii_homolog_perc_id
## 2686 sharrisii_homolog_perc_id_r1
## 2687 sharrisii_homolog_goc_score
## 2688 sharrisii_homolog_orthology_confidence
## 2689 tnigroviridis_homolog_ensembl_gene
## 2690 tnigroviridis_homolog_associated_gene_name
## 2691 tnigroviridis_homolog_ensembl_peptide
## 2692 tnigroviridis_homolog_chromosome
## 2693 tnigroviridis_homolog_chrom_start
## 2694 tnigroviridis_homolog_chrom_end
## 2695 tnigroviridis_homolog_canonical_transcript_protein
## 2696 tnigroviridis_homolog_subtype
## 2697 tnigroviridis_homolog_orthology_type
## 2698 tnigroviridis_homolog_perc_id
## 2699 tnigroviridis_homolog_perc_id_r1
## 2700 tnigroviridis_homolog_goc_score
## 2701 tnigroviridis_homolog_wga_coverage
## 2702 tnigroviridis_homolog_orthology_confidence
## 2703 tctriunguis_homolog_ensembl_gene
## 2704 tctriunguis_homolog_associated_gene_name
## 2705 tctriunguis_homolog_ensembl_peptide
## 2706 tctriunguis_homolog_chromosome
## 2707 tctriunguis_homolog_chrom_start
## 2708 tctriunguis_homolog_chrom_end
## 2709 tctriunguis_homolog_canonical_transcript_protein
## 2710 tctriunguis_homolog_subtype
## 2711 tctriunguis_homolog_orthology_type
## 2712 tctriunguis_homolog_perc_id
## 2713 tctriunguis_homolog_perc_id_r1
## 2714 tctriunguis_homolog_goc_score
## 2715 tctriunguis_homolog_wga_coverage
## 2716 tctriunguis_homolog_orthology_confidence
## 2717 ptaltaica_homolog_ensembl_gene
## 2718 ptaltaica_homolog_associated_gene_name
## 2719 ptaltaica_homolog_ensembl_peptide
## 2720 ptaltaica_homolog_chromosome
## 2721 ptaltaica_homolog_chrom_start
## 2722 ptaltaica_homolog_chrom_end
## 2723 ptaltaica_homolog_canonical_transcript_protein
## 2724 ptaltaica_homolog_subtype
## 2725 ptaltaica_homolog_orthology_type
## 2726 ptaltaica_homolog_perc_id
## 2727 ptaltaica_homolog_perc_id_r1
## 2728 ptaltaica_homolog_goc_score
## 2729 ptaltaica_homolog_wga_coverage
## 2730 ptaltaica_homolog_orthology_confidence
## 2731 hcomes_homolog_ensembl_gene
## 2732 hcomes_homolog_associated_gene_name
## 2733 hcomes_homolog_ensembl_peptide
## 2734 hcomes_homolog_chromosome
## 2735 hcomes_homolog_chrom_start
## 2736 hcomes_homolog_chrom_end
## 2737 hcomes_homolog_canonical_transcript_protein
## 2738 hcomes_homolog_subtype
## 2739 hcomes_homolog_orthology_type
## 2740 hcomes_homolog_perc_id
## 2741 hcomes_homolog_perc_id_r1
## 2742 hcomes_homolog_goc_score
## 2743 hcomes_homolog_wga_coverage
## 2744 hcomes_homolog_orthology_confidence
## 2745 csemilaevis_homolog_ensembl_gene
## 2746 csemilaevis_homolog_associated_gene_name
## 2747 csemilaevis_homolog_ensembl_peptide
## 2748 csemilaevis_homolog_chromosome
## 2749 csemilaevis_homolog_chrom_start
## 2750 csemilaevis_homolog_chrom_end
## 2751 csemilaevis_homolog_canonical_transcript_protein
## 2752 csemilaevis_homolog_subtype
## 2753 csemilaevis_homolog_orthology_type
## 2754 csemilaevis_homolog_perc_id
## 2755 csemilaevis_homolog_perc_id_r1
## 2756 csemilaevis_homolog_goc_score
## 2757 csemilaevis_homolog_wga_coverage
## 2758 csemilaevis_homolog_orthology_confidence
## 2759 tbelangeri_homolog_ensembl_gene
## 2760 tbelangeri_homolog_associated_gene_name
## 2761 tbelangeri_homolog_ensembl_peptide
## 2762 tbelangeri_homolog_chromosome
## 2763 tbelangeri_homolog_chrom_start
## 2764 tbelangeri_homolog_chrom_end
## 2765 tbelangeri_homolog_canonical_transcript_protein
## 2766 tbelangeri_homolog_subtype
## 2767 tbelangeri_homolog_orthology_type
## 2768 tbelangeri_homolog_perc_id
## 2769 tbelangeri_homolog_perc_id_r1
## 2770 tbelangeri_homolog_goc_score
## 2771 tbelangeri_homolog_wga_coverage
## 2772 tbelangeri_homolog_orthology_confidence
## 2773 xtropicalis_homolog_ensembl_gene
## 2774 xtropicalis_homolog_associated_gene_name
## 2775 xtropicalis_homolog_ensembl_peptide
## 2776 xtropicalis_homolog_chromosome
## 2777 xtropicalis_homolog_chrom_start
## 2778 xtropicalis_homolog_chrom_end
## 2779 xtropicalis_homolog_canonical_transcript_protein
## 2780 xtropicalis_homolog_subtype
## 2781 xtropicalis_homolog_orthology_type
## 2782 xtropicalis_homolog_perc_id
## 2783 xtropicalis_homolog_perc_id_r1
## 2784 xtropicalis_homolog_goc_score
## 2785 xtropicalis_homolog_orthology_confidence
## 2786 spunctatus_homolog_ensembl_gene
## 2787 spunctatus_homolog_associated_gene_name
## 2788 spunctatus_homolog_ensembl_peptide
## 2789 spunctatus_homolog_chromosome
## 2790 spunctatus_homolog_chrom_start
## 2791 spunctatus_homolog_chrom_end
## 2792 spunctatus_homolog_canonical_transcript_protein
## 2793 spunctatus_homolog_subtype
## 2794 spunctatus_homolog_orthology_type
## 2795 spunctatus_homolog_perc_id
## 2796 spunctatus_homolog_perc_id_r1
## 2797 spunctatus_homolog_goc_score
## 2798 spunctatus_homolog_wga_coverage
## 2799 spunctatus_homolog_orthology_confidence
## 2800 smaximus_homolog_ensembl_gene
## 2801 smaximus_homolog_associated_gene_name
## 2802 smaximus_homolog_ensembl_peptide
## 2803 smaximus_homolog_chromosome
## 2804 smaximus_homolog_chrom_start
## 2805 smaximus_homolog_chrom_end
## 2806 smaximus_homolog_canonical_transcript_protein
## 2807 smaximus_homolog_subtype
## 2808 smaximus_homolog_orthology_type
## 2809 smaximus_homolog_perc_id
## 2810 smaximus_homolog_perc_id_r1
## 2811 smaximus_homolog_goc_score
## 2812 smaximus_homolog_orthology_confidence
## 2813 mgallopavo_homolog_ensembl_gene
## 2814 mgallopavo_homolog_associated_gene_name
## 2815 mgallopavo_homolog_ensembl_peptide
## 2816 mgallopavo_homolog_chromosome
## 2817 mgallopavo_homolog_chrom_start
## 2818 mgallopavo_homolog_chrom_end
## 2819 mgallopavo_homolog_canonical_transcript_protein
## 2820 mgallopavo_homolog_subtype
## 2821 mgallopavo_homolog_orthology_type
## 2822 mgallopavo_homolog_perc_id
## 2823 mgallopavo_homolog_perc_id_r1
## 2824 mgallopavo_homolog_goc_score
## 2825 mgallopavo_homolog_orthology_confidence
## 2826 nfurzeri_homolog_ensembl_gene
## 2827 nfurzeri_homolog_associated_gene_name
## 2828 nfurzeri_homolog_ensembl_peptide
## 2829 nfurzeri_homolog_chromosome
## 2830 nfurzeri_homolog_chrom_start
## 2831 nfurzeri_homolog_chrom_end
## 2832 nfurzeri_homolog_canonical_transcript_protein
## 2833 nfurzeri_homolog_subtype
## 2834 nfurzeri_homolog_orthology_type
## 2835 nfurzeri_homolog_perc_id
## 2836 nfurzeri_homolog_perc_id_r1
## 2837 nfurzeri_homolog_goc_score
## 2838 nfurzeri_homolog_wga_coverage
## 2839 nfurzeri_homolog_orthology_confidence
## 2840 ngalili_homolog_ensembl_gene
## 2841 ngalili_homolog_associated_gene_name
## 2842 ngalili_homolog_ensembl_peptide
## 2843 ngalili_homolog_chromosome
## 2844 ngalili_homolog_chrom_start
## 2845 ngalili_homolog_chrom_end
## 2846 ngalili_homolog_canonical_transcript_protein
## 2847 ngalili_homolog_subtype
## 2848 ngalili_homolog_orthology_type
## 2849 ngalili_homolog_perc_id
## 2850 ngalili_homolog_perc_id_r1
## 2851 ngalili_homolog_goc_score
## 2852 ngalili_homolog_wga_coverage
## 2853 ngalili_homolog_orthology_confidence
## 2854 psinus_homolog_ensembl_gene
## 2855 psinus_homolog_associated_gene_name
## 2856 psinus_homolog_ensembl_peptide
## 2857 psinus_homolog_chromosome
## 2858 psinus_homolog_chrom_start
## 2859 psinus_homolog_chrom_end
## 2860 psinus_homolog_canonical_transcript_protein
## 2861 psinus_homolog_subtype
## 2862 psinus_homolog_orthology_type
## 2863 psinus_homolog_perc_id
## 2864 psinus_homolog_perc_id_r1
## 2865 psinus_homolog_goc_score
## 2866 psinus_homolog_wga_coverage
## 2867 psinus_homolog_orthology_confidence
## 2868 csabaeus_homolog_ensembl_gene
## 2869 csabaeus_homolog_associated_gene_name
## 2870 csabaeus_homolog_ensembl_peptide
## 2871 csabaeus_homolog_chromosome
## 2872 csabaeus_homolog_chrom_start
## 2873 csabaeus_homolog_chrom_end
## 2874 csabaeus_homolog_canonical_transcript_protein
## 2875 csabaeus_homolog_subtype
## 2876 csabaeus_homolog_orthology_type
## 2877 csabaeus_homolog_perc_id
## 2878 csabaeus_homolog_perc_id_r1
## 2879 csabaeus_homolog_goc_score
## 2880 csabaeus_homolog_wga_coverage
## 2881 csabaeus_homolog_orthology_confidence
## 2882 neugenii_homolog_ensembl_gene
## 2883 neugenii_homolog_associated_gene_name
## 2884 neugenii_homolog_ensembl_peptide
## 2885 neugenii_homolog_chromosome
## 2886 neugenii_homolog_chrom_start
## 2887 neugenii_homolog_chrom_end
## 2888 neugenii_homolog_canonical_transcript_protein
## 2889 neugenii_homolog_subtype
## 2890 neugenii_homolog_orthology_type
## 2891 neugenii_homolog_perc_id
## 2892 neugenii_homolog_perc_id_r1
## 2893 neugenii_homolog_goc_score
## 2894 neugenii_homolog_wga_coverage
## 2895 neugenii_homolog_orthology_confidence
## 2896 cjacchus_homolog_ensembl_gene
## 2897 cjacchus_homolog_associated_gene_name
## 2898 cjacchus_homolog_ensembl_peptide
## 2899 cjacchus_homolog_chromosome
## 2900 cjacchus_homolog_chrom_start
## 2901 cjacchus_homolog_chrom_end
## 2902 cjacchus_homolog_canonical_transcript_protein
## 2903 cjacchus_homolog_subtype
## 2904 cjacchus_homolog_orthology_type
## 2905 cjacchus_homolog_perc_id
## 2906 cjacchus_homolog_perc_id_r1
## 2907 cjacchus_homolog_goc_score
## 2908 cjacchus_homolog_wga_coverage
## 2909 cjacchus_homolog_orthology_confidence
## 2910 bmutus_homolog_ensembl_gene
## 2911 bmutus_homolog_associated_gene_name
## 2912 bmutus_homolog_ensembl_peptide
## 2913 bmutus_homolog_chromosome
## 2914 bmutus_homolog_chrom_start
## 2915 bmutus_homolog_chrom_end
## 2916 bmutus_homolog_canonical_transcript_protein
## 2917 bmutus_homolog_subtype
## 2918 bmutus_homolog_orthology_type
## 2919 bmutus_homolog_perc_id
## 2920 bmutus_homolog_perc_id_r1
## 2921 bmutus_homolog_goc_score
## 2922 bmutus_homolog_wga_coverage
## 2923 bmutus_homolog_orthology_confidence
## 2924 chyarkandensis_homolog_ensembl_gene
## 2925 chyarkandensis_homolog_associated_gene_name
## 2926 chyarkandensis_homolog_ensembl_peptide
## 2927 chyarkandensis_homolog_chromosome
## 2928 chyarkandensis_homolog_chrom_start
## 2929 chyarkandensis_homolog_chrom_end
## 2930 chyarkandensis_homolog_canonical_transcript_protein
## 2931 chyarkandensis_homolog_subtype
## 2932 chyarkandensis_homolog_orthology_type
## 2933 chyarkandensis_homolog_perc_id
## 2934 chyarkandensis_homolog_perc_id_r1
## 2935 chyarkandensis_homolog_goc_score
## 2936 chyarkandensis_homolog_wga_coverage
## 2937 chyarkandensis_homolog_orthology_confidence
## 2938 sldorsalis_homolog_ensembl_gene
## 2939 sldorsalis_homolog_associated_gene_name
## 2940 sldorsalis_homolog_ensembl_peptide
## 2941 sldorsalis_homolog_chromosome
## 2942 sldorsalis_homolog_chrom_start
## 2943 sldorsalis_homolog_chrom_end
## 2944 sldorsalis_homolog_canonical_transcript_protein
## 2945 sldorsalis_homolog_subtype
## 2946 sldorsalis_homolog_orthology_type
## 2947 sldorsalis_homolog_perc_id
## 2948 sldorsalis_homolog_perc_id_r1
## 2949 sldorsalis_homolog_goc_score
## 2950 sldorsalis_homolog_wga_coverage
## 2951 sldorsalis_homolog_orthology_confidence
## 2952 tguttata_homolog_ensembl_gene
## 2953 tguttata_homolog_associated_gene_name
## 2954 tguttata_homolog_ensembl_peptide
## 2955 tguttata_homolog_chromosome
## 2956 tguttata_homolog_chrom_start
## 2957 tguttata_homolog_chrom_end
## 2958 tguttata_homolog_canonical_transcript_protein
## 2959 tguttata_homolog_subtype
## 2960 tguttata_homolog_orthology_type
## 2961 tguttata_homolog_perc_id
## 2962 tguttata_homolog_perc_id_r1
## 2963 tguttata_homolog_goc_score
## 2964 tguttata_homolog_wga_coverage
## 2965 tguttata_homolog_orthology_confidence
## 2966 mzebra_homolog_ensembl_gene
## 2967 mzebra_homolog_associated_gene_name
## 2968 mzebra_homolog_ensembl_peptide
## 2969 mzebra_homolog_chromosome
## 2970 mzebra_homolog_chrom_start
## 2971 mzebra_homolog_chrom_end
## 2972 mzebra_homolog_canonical_transcript_protein
## 2973 mzebra_homolog_subtype
## 2974 mzebra_homolog_orthology_type
## 2975 mzebra_homolog_perc_id
## 2976 mzebra_homolog_perc_id_r1
## 2977 mzebra_homolog_goc_score
## 2978 mzebra_homolog_wga_coverage
## 2979 mzebra_homolog_orthology_confidence
## 2980 drerio_homolog_ensembl_gene
## 2981 drerio_homolog_associated_gene_name
## 2982 drerio_homolog_ensembl_peptide
## 2983 drerio_homolog_chromosome
## 2984 drerio_homolog_chrom_start
## 2985 drerio_homolog_chrom_end
## 2986 drerio_homolog_canonical_transcript_protein
## 2987 drerio_homolog_subtype
## 2988 drerio_homolog_orthology_type
## 2989 drerio_homolog_perc_id
## 2990 drerio_homolog_perc_id_r1
## 2991 drerio_homolog_goc_score
## 2992 drerio_homolog_wga_coverage
## 2993 drerio_homolog_orthology_confidence
## 2994 marmatus_homolog_ensembl_gene
## 2995 marmatus_homolog_associated_gene_name
## 2996 marmatus_homolog_ensembl_peptide
## 2997 marmatus_homolog_chromosome
## 2998 marmatus_homolog_chrom_start
## 2999 marmatus_homolog_chrom_end
## 3000 marmatus_homolog_canonical_transcript_protein
## 3001 marmatus_homolog_subtype
## 3002 marmatus_homolog_orthology_type
## 3003 marmatus_homolog_perc_id
## 3004 marmatus_homolog_perc_id_r1
## 3005 marmatus_homolog_goc_score
## 3006 marmatus_homolog_orthology_confidence
## 3007 hsapiens_paralog_ensembl_gene
## 3008 hsapiens_paralog_associated_gene_name
## 3009 hsapiens_paralog_ensembl_peptide
## 3010 hsapiens_paralog_chromosome
## 3011 hsapiens_paralog_chrom_start
## 3012 hsapiens_paralog_chrom_end
## 3013 hsapiens_paralog_canonical_transcript_protein
## 3014 hsapiens_paralog_subtype
## 3015 hsapiens_paralog_orthology_type
## 3016 hsapiens_paralog_perc_id
## 3017 hsapiens_paralog_perc_id_r1
## 3018 ensembl_gene_id
## 3019 ensembl_gene_id_version
## 3020 version
## 3021 ensembl_transcript_id
## 3022 ensembl_transcript_id_version
## 3023 transcript_version
## 3024 ensembl_peptide_id
## 3025 ensembl_peptide_id_version
## 3026 peptide_version
## 3027 chromosome_name
## 3028 start_position
## 3029 end_position
## 3030 strand
## 3031 band
## 3032 external_gene_name
## 3033 external_gene_source
## 3034 transcript_count
## 3035 percentage_gene_gc_content
## 3036 description
## 3037 variation_name
## 3038 germ_line_variation_source
## 3039 source_description
## 3040 allele
## 3041 validated
## 3042 mapweight
## 3043 minor_allele
## 3044 minor_allele_freq
## 3045 minor_allele_count
## 3046 clinical_significance
## 3047 transcript_location
## 3048 snp_chromosome_strand
## 3049 peptide_location
## 3050 chromosome_start
## 3051 chromosome_end
## 3052 polyphen_prediction_2076
## 3053 polyphen_score_2076
## 3054 sift_prediction_2076
## 3055 sift_score_2076
## 3056 distance_to_transcript_2076
## 3057 cds_start_2076
## 3058 cds_end_2076
## 3059 peptide_shift
## 3060 synonymous_status
## 3061 allele_string_2076
## 3062 ensembl_gene_id
## 3063 ensembl_gene_id_version
## 3064 version
## 3065 ensembl_transcript_id
## 3066 ensembl_transcript_id_version
## 3067 transcript_version
## 3068 ensembl_peptide_id
## 3069 ensembl_peptide_id_version
## 3070 peptide_version
## 3071 chromosome_name
## 3072 start_position
## 3073 end_position
## 3074 strand
## 3075 band
## 3076 external_gene_name
## 3077 external_gene_source
## 3078 transcript_count
## 3079 percentage_gene_gc_content
## 3080 description
## 3081 somatic_variation_name
## 3082 somatic_source_name
## 3083 somatic_source_description
## 3084 somatic_allele
## 3085 somatic_validated
## 3086 somatic_mapweight
## 3087 somatic_transcript_location
## 3088 somatic_snp_chromosome_strand
## 3089 somatic_peptide_location
## 3090 somatic_chromosome_start
## 3091 somatic_chromosome_end
## 3092 mart_transcript_variation_som__dm_distance_to_transcript_2076
## 3093 somatic_cds_start_2076
## 3094 somatic_cds_end_2076
## 3095 somatic_synonymous_status
## 3096 mart_transcript_variation_som__dm_allele_string_2076
## 3097 transcript_exon_intron
## 3098 gene_exon_intron
## 3099 transcript_flank
## 3100 gene_flank
## 3101 coding_transcript_flank
## 3102 coding_gene_flank
## 3103 5utr
## 3104 3utr
## 3105 gene_exon
## 3106 cdna
## 3107 coding
## 3108 peptide
## 3109 upstream_flank
## 3110 downstream_flank
## 3111 ensembl_gene_id
## 3112 ensembl_gene_id_version
## 3113 description
## 3114 external_gene_name
## 3115 external_gene_source
## 3116 chromosome_name
## 3117 start_position
## 3118 end_position
## 3119 gene_biotype
## 3120 version
## 3121 uniparc
## 3122 uniprotswissprot
## 3123 uniprotsptrembl
## 3124 cdna_coding_start
## 3125 cdna_coding_end
## 3126 5_utr_start
## 3127 5_utr_end
## 3128 3_utr_start
## 3129 3_utr_end
## 3130 ensembl_transcript_id
## 3131 ensembl_transcript_id_version
## 3132 ensembl_peptide_id
## 3133 ensembl_peptide_id_version
## 3134 transcript_biotype
## 3135 transcript_version
## 3136 peptide_version
## 3137 strand
## 3138 transcript_start
## 3139 transcript_end
## 3140 transcription_start_site
## 3141 transcript_length
## 3142 cds_length
## 3143 cds_start
## 3144 cds_end
## 3145 ensembl_exon_id
## 3146 exon_chrom_start
## 3147 exon_chrom_end
## 3148 strand
## 3149 rank
## 3150 phase
## 3151 end_phase
## 3152 cdna_coding_start
## 3153 cdna_coding_end
## 3154 genomic_coding_start
## 3155 genomic_coding_end
## 3156 is_constitutive
## description
## 1 Gene stable ID
## 2 Gene stable ID version
## 3 Transcript stable ID
## 4 Transcript stable ID version
## 5 Protein stable ID
## 6 Protein stable ID version
## 7 Exon stable ID
## 8 Gene description
## 9 Chromosome/scaffold name
## 10 Gene start (bp)
## 11 Gene end (bp)
## 12 Strand
## 13 Karyotype band
## 14 Transcript start (bp)
## 15 Transcript end (bp)
## 16 Transcription start site (TSS)
## 17 Transcript length (including UTRs and CDS)
## 18 Transcript support level (TSL)
## 19 GENCODE basic annotation
## 20 APPRIS annotation
## 21 Ensembl Canonical
## 22 RefSeq match transcript (MANE Select)
## 23 RefSeq match transcript (MANE Plus Clinical)
## 24 Gene name
## 25 Source of gene name
## 26 Transcript name
## 27 Source of transcript name
## 28 Transcript count
## 29 Gene % GC content
## 30 Gene type
## 31 Transcript type
## 32 Source (gene)
## 33 Source (transcript)
## 34 Version (gene)
## 35 Version (transcript)
## 36 Version (protein)
## 37 Gene Synonym
## 38 Phenotype description
## 39 Source name
## 40 Study external reference
## 41 Strain name
## 42 Strain gender
## 43 P value
## 44 GO term accession
## 45 GO term name
## 46 GO term definition
## 47 GO term evidence code
## 48 GO domain
## 49 GOSlim GOA Accession(s)
## 50 GOSlim GOA Description
## 51 BioGRID Interaction data, The General Repository for Interaction Datasets ID
## 52 CCDS ID
## 53 ChEMBL ID
## 54 DataBase of Aberrant 3' Splice Sites name
## 55 DataBase of Aberrant 3' Splice Sites ID
## 56 DataBase of Aberrant 5' Splice Sites name
## 57 DataBase of Aberrant 5' Splice Sites ID
## 58 EntrezGene transcript name ID
## 59 European Nucleotide Archive ID
## 60 Expression Atlas ID
## 61 GeneCards ID
## 62 HGNC ID
## 63 HGNC symbol
## 64 Human Protein Atlas accession
## 65 Human Protein Atlas ID
## 66 INSDC protein ID
## 67 LRG display in Ensembl gene ID
## 68 LRG display in Ensembl transcript ID
## 69 MEROPS - the Peptidase Database ID
## 70 MIM gene description
## 71 MIM gene accession
## 72 MIM morbid description
## 73 MIM morbid accession
## 74 miRBase accession
## 75 miRBase ID
## 76 miRBase transcript name ID
## 77 NCBI gene (formerly Entrezgene) description
## 78 NCBI gene (formerly Entrezgene) accession
## 79 NCBI gene (formerly Entrezgene) ID
## 80 PDB ID
## 81 Reactome ID
## 82 Reactome gene ID
## 83 Reactome transcript ID
## 84 RefSeq mRNA ID
## 85 RefSeq mRNA predicted ID
## 86 RefSeq ncRNA ID
## 87 RefSeq ncRNA predicted ID
## 88 RefSeq peptide ID
## 89 RefSeq peptide predicted ID
## 90 RFAM ID
## 91 RFAM transcript name ID
## 92 RNAcentral ID
## 93 Transcript name ID
## 94 UCSC Stable ID
## 95 UniParc ID
## 96 UniProtKB Gene Name symbol
## 97 UniProtKB Gene Name ID
## 98 UniProtKB isoform ID
## 99 UniProtKB/Swiss-Prot ID
## 100 UniProtKB/TrEMBL ID
## 101 WikiGene description
## 102 WikiGene name
## 103 WikiGene ID
## 104 AFFY HC G110 probe
## 105 AFFY HG Focus probe
## 106 AFFY HG U133A 2 probe
## 107 AFFY HG U133B probe
## 108 AFFY HG U133 Plus 2 probe
## 109 AFFY HG U95A probe
## 110 AFFY HG U95Av2 probe
## 111 AFFY HG U95B probe
## 112 AFFY HG U95C probe
## 113 AFFY HG U95D probe
## 114 AFFY HG U95E probe
## 115 AFFY HTA 2 0 probe
## 116 AFFY HT HG U133 Plus PM probe
## 117 AFFY HuEx 1 0 st v2 probe
## 118 AFFY HuGeneFL probe
## 119 AFFY HuGene 1 0 st v1 probe
## 120 AFFY HuGene 2 0 st v1 probe
## 121 AFFY HuGene 2 1 st v1 probe
## 122 AFFY PrimeView probe
## 123 AFFY U133 X3P probe
## 124 AGILENT CGH 44b probe
## 125 AGILENT GPL19072 probe
## 126 AGILENT GPL26966 probe
## 127 AGILENT GPL6848 probe
## 128 AGILENT SurePrint G3 GE 8x60k probe
## 129 AGILENT SurePrint G3 GE 8x60k v2 probe
## 130 AGILENT WholeGenome probe
## 131 AGILENT WholeGenome 4x44k v1 probe
## 132 AGILENT WholeGenome 4x44k v2 probe
## 133 CODELINK CODELINK probe
## 134 ILLUMINA HumanRef 8 V3 probe
## 135 ILLUMINA HumanWG 6 V3 probe
## 136 PHALANX OneArray probe
## 137 CDD ID
## 138 CDD start
## 139 CDD end
## 140 Gene3D ID
## 141 Gene3D start
## 142 Gene3D end
## 143 HAMAP ID
## 144 HAMAP start
## 145 HAMAP end
## 146 PANTHER ID
## 147 PANTHER start
## 148 PANTHER end
## 149 Pfam ID
## 150 Pfam start
## 151 Pfam end
## 152 PIRSF ID
## 153 PIRSF start
## 154 PIRSF end
## 155 Prints ID
## 156 Prints start
## 157 Prints end
## 158 PROSITE patterns ID
## 159 PROSITE patterns start
## 160 PROSITE patterns end
## 161 PROSITE profiles ID
## 162 PROSITE profiles start
## 163 PROSITE profiles end
## 164 SFLD ID
## 165 SFLD start
## 166 SFLD end
## 167 SMART ID
## 168 SMART start
## 169 SMART end
## 170 Superfamily ID
## 171 Superfamily start
## 172 Superfamily end
## 173 TIGRFAM ID
## 174 TIGRFAM start
## 175 TIGRFAM end
## 176 Interpro ID
## 177 Interpro Short Description
## 178 Interpro Description
## 179 Interpro start
## 180 Interpro end
## 181 AFDB-ENSP mappings
## 182 AFDB-ENSP mappings start
## 183 AFDB-ENSP mappings end
## 184 MobiDB lite
## 185 MobiDB lite start
## 186 MobiDB lite end
## 187 Coiled-coils (Ncoils)
## 188 Coiled-coils (Ncoils) start
## 189 Coiled-coils (Ncoils) end
## 190 Low complexity (Seg)
## 191 Low complexity (Seg) start
## 192 Low complexity (Seg) end
## 193 PDB-ENSP mappings
## 194 PDB-ENSP mappings start
## 195 PDB-ENSP mappings end
## 196 Cleavage site (Signalp)
## 197 Cleavage site (Signalp) start
## 198 Cleavage site (Signalp) end
## 199 Transmembrane helices
## 200 Transmembrane helices start
## 201 Transmembrane helices end
## 202 Gene stable ID
## 203 Gene stable ID version
## 204 Version (gene)
## 205 Transcript stable ID
## 206 Transcript stable ID version
## 207 Version (transcript)
## 208 Protein stable ID
## 209 Protein stable ID version
## 210 Version (protein)
## 211 Chromosome/scaffold name
## 212 Gene start (bp)
## 213 Gene end (bp)
## 214 Transcript start (bp)
## 215 Transcript end (bp)
## 216 Transcription start site (TSS)
## 217 Transcript length (including UTRs and CDS)
## 218 Strand
## 219 Gene name
## 220 Source of gene name
## 221 5' UTR start
## 222 5' UTR end
## 223 3' UTR start
## 224 3' UTR end
## 225 CDS Length
## 226 Transcript count
## 227 Gene description
## 228 Gene type
## 229 Exon region start (bp)
## 230 Exon region end (bp)
## 231 Constitutive exon
## 232 Exon rank in transcript
## 233 Start phase
## 234 End phase
## 235 cDNA coding start
## 236 cDNA coding end
## 237 Genomic coding start
## 238 Genomic coding end
## 239 Exon stable ID
## 240 CDS start
## 241 CDS end
## 242 Gene stable ID
## 243 Gene stable ID version
## 244 Version (gene)
## 245 Transcript stable ID
## 246 Transcript stable ID version
## 247 Version (transcript)
## 248 Protein stable ID
## 249 Protein stable ID version
## 250 Version (protein)
## 251 Chromosome/scaffold name
## 252 Gene start (bp)
## 253 Gene end (bp)
## 254 Strand
## 255 Karyotype band
## 256 Gene name
## 257 Source of gene name
## 258 Transcript count
## 259 Gene % GC content
## 260 Gene description
## 261 Abingdon island giant tortoise gene stable ID
## 262 Abingdon island giant tortoise gene name
## 263 Abingdon island giant tortoise protein or transcript stable ID
## 264 Abingdon island giant tortoise chromosome/scaffold name
## 265 Abingdon island giant tortoise chromosome/scaffold start (bp)
## 266 Abingdon island giant tortoise chromosome/scaffold end (bp)
## 267 Query protein or transcript ID
## 268 Last common ancestor with Abingdon island giant tortoise
## 269 Abingdon island giant tortoise homology type
## 270 %id. target Abingdon island giant tortoise gene identical to query gene
## 271 %id. query gene identical to target Abingdon island giant tortoise gene
## 272 Abingdon island giant tortoise Gene-order conservation score
## 273 Abingdon island giant tortoise Whole-genome alignment coverage
## 274 Abingdon island giant tortoise orthology confidence [0 low, 1 high]
## 275 African ostrich gene stable ID
## 276 African ostrich gene name
## 277 African ostrich protein or transcript stable ID
## 278 African ostrich chromosome/scaffold name
## 279 African ostrich chromosome/scaffold start (bp)
## 280 African ostrich chromosome/scaffold end (bp)
## 281 Query protein or transcript ID
## 282 Last common ancestor with African ostrich
## 283 African ostrich homology type
## 284 %id. target African ostrich gene identical to query gene
## 285 %id. query gene identical to target African ostrich gene
## 286 African ostrich Gene-order conservation score
## 287 African ostrich Whole-genome alignment coverage
## 288 African ostrich orthology confidence [0 low, 1 high]
## 289 Algerian mouse gene stable ID
## 290 Algerian mouse gene name
## 291 Algerian mouse protein or transcript stable ID
## 292 Algerian mouse chromosome/scaffold name
## 293 Algerian mouse chromosome/scaffold start (bp)
## 294 Algerian mouse chromosome/scaffold end (bp)
## 295 Query protein or transcript ID
## 296 Last common ancestor with Algerian mouse
## 297 Algerian mouse homology type
## 298 %id. target Algerian mouse gene identical to query gene
## 299 %id. query gene identical to target Algerian mouse gene
## 300 Algerian mouse Gene-order conservation score
## 301 Algerian mouse Whole-genome alignment coverage
## 302 Algerian mouse orthology confidence [0 low, 1 high]
## 303 Alpaca gene stable ID
## 304 Alpaca gene name
## 305 Alpaca protein or transcript stable ID
## 306 Alpaca chromosome/scaffold name
## 307 Alpaca chromosome/scaffold start (bp)
## 308 Alpaca chromosome/scaffold end (bp)
## 309 Query protein or transcript ID
## 310 Last common ancestor with Alpaca
## 311 Alpaca homology type
## 312 %id. target Alpaca gene identical to query gene
## 313 %id. query gene identical to target Alpaca gene
## 314 Alpaca Gene-order conservation score
## 315 Alpaca Whole-genome alignment coverage
## 316 Alpaca orthology confidence [0 low, 1 high]
## 317 Alpine marmot gene stable ID
## 318 Alpine marmot gene name
## 319 Alpine marmot protein or transcript stable ID
## 320 Alpine marmot chromosome/scaffold name
## 321 Alpine marmot chromosome/scaffold start (bp)
## 322 Alpine marmot chromosome/scaffold end (bp)
## 323 Query protein or transcript ID
## 324 Last common ancestor with Alpine marmot
## 325 Alpine marmot homology type
## 326 %id. target Alpine marmot gene identical to query gene
## 327 %id. query gene identical to target Alpine marmot gene
## 328 Alpine marmot Gene-order conservation score
## 329 Alpine marmot Whole-genome alignment coverage
## 330 Alpine marmot orthology confidence [0 low, 1 high]
## 331 Amazon molly gene stable ID
## 332 Amazon molly gene name
## 333 Amazon molly protein or transcript stable ID
## 334 Amazon molly chromosome/scaffold name
## 335 Amazon molly chromosome/scaffold start (bp)
## 336 Amazon molly chromosome/scaffold end (bp)
## 337 Query protein or transcript ID
## 338 Last common ancestor with Amazon molly
## 339 Amazon molly homology type
## 340 %id. target Amazon molly gene identical to query gene
## 341 %id. query gene identical to target Amazon molly gene
## 342 Amazon molly Gene-order conservation score
## 343 Amazon molly Whole-genome alignment coverage
## 344 Amazon molly orthology confidence [0 low, 1 high]
## 345 American bison gene stable ID
## 346 American bison gene name
## 347 American bison protein or transcript stable ID
## 348 American bison chromosome/scaffold name
## 349 American bison chromosome/scaffold start (bp)
## 350 American bison chromosome/scaffold end (bp)
## 351 Query protein or transcript ID
## 352 Last common ancestor with American bison
## 353 American bison homology type
## 354 %id. target American bison gene identical to query gene
## 355 %id. query gene identical to target American bison gene
## 356 American bison Gene-order conservation score
## 357 American bison Whole-genome alignment coverage
## 358 American bison orthology confidence [0 low, 1 high]
## 359 American black bear gene stable ID
## 360 American black bear gene name
## 361 American black bear protein or transcript stable ID
## 362 American black bear chromosome/scaffold name
## 363 American black bear chromosome/scaffold start (bp)
## 364 American black bear chromosome/scaffold end (bp)
## 365 Query protein or transcript ID
## 366 Last common ancestor with American black bear
## 367 American black bear homology type
## 368 %id. target American black bear gene identical to query gene
## 369 %id. query gene identical to target American black bear gene
## 370 American black bear Gene-order conservation score
## 371 American black bear Whole-genome alignment coverage
## 372 American black bear orthology confidence [0 low, 1 high]
## 373 American mink gene stable ID
## 374 American mink gene name
## 375 American mink protein or transcript stable ID
## 376 American mink chromosome/scaffold name
## 377 American mink chromosome/scaffold start (bp)
## 378 American mink chromosome/scaffold end (bp)
## 379 Query protein or transcript ID
## 380 Last common ancestor with American mink
## 381 American mink homology type
## 382 %id. target American mink gene identical to query gene
## 383 %id. query gene identical to target American mink gene
## 384 American mink Gene-order conservation score
## 385 American mink Whole-genome alignment coverage
## 386 American mink orthology confidence [0 low, 1 high]
## 387 Arabian camel gene stable ID
## 388 Arabian camel gene name
## 389 Arabian camel protein or transcript stable ID
## 390 Arabian camel chromosome/scaffold name
## 391 Arabian camel chromosome/scaffold start (bp)
## 392 Arabian camel chromosome/scaffold end (bp)
## 393 Query protein or transcript ID
## 394 Last common ancestor with Arabian camel
## 395 Arabian camel homology type
## 396 %id. target Arabian camel gene identical to query gene
## 397 %id. query gene identical to target Arabian camel gene
## 398 Arabian camel Gene-order conservation score
## 399 Arabian camel Whole-genome alignment coverage
## 400 Arabian camel orthology confidence [0 low, 1 high]
## 401 Arctic ground squirrel gene stable ID
## 402 Arctic ground squirrel gene name
## 403 Arctic ground squirrel protein or transcript stable ID
## 404 Arctic ground squirrel chromosome/scaffold name
## 405 Arctic ground squirrel chromosome/scaffold start (bp)
## 406 Arctic ground squirrel chromosome/scaffold end (bp)
## 407 Query protein or transcript ID
## 408 Last common ancestor with Arctic ground squirrel
## 409 Arctic ground squirrel homology type
## 410 %id. target Arctic ground squirrel gene identical to query gene
## 411 %id. query gene identical to target Arctic ground squirrel gene
## 412 Arctic ground squirrel Gene-order conservation score
## 413 Arctic ground squirrel Whole-genome alignment coverage
## 414 Arctic ground squirrel orthology confidence [0 low, 1 high]
## 415 Argentine black and white tegu gene stable ID
## 416 Argentine black and white tegu gene name
## 417 Argentine black and white tegu protein or transcript stable ID
## 418 Argentine black and white tegu chromosome/scaffold name
## 419 Argentine black and white tegu chromosome/scaffold start (bp)
## 420 Argentine black and white tegu chromosome/scaffold end (bp)
## 421 Query protein or transcript ID
## 422 Last common ancestor with Argentine black and white tegu
## 423 Argentine black and white tegu homology type
## 424 %id. target Argentine black and white tegu gene identical to query gene
## 425 %id. query gene identical to target Argentine black and white tegu gene
## 426 Argentine black and white tegu Gene-order conservation score
## 427 Argentine black and white tegu Whole-genome alignment coverage
## 428 Argentine black and white tegu orthology confidence [0 low, 1 high]
## 429 Armadillo gene stable ID
## 430 Armadillo gene name
## 431 Armadillo protein or transcript stable ID
## 432 Armadillo chromosome/scaffold name
## 433 Armadillo chromosome/scaffold start (bp)
## 434 Armadillo chromosome/scaffold end (bp)
## 435 Query protein or transcript ID
## 436 Last common ancestor with Armadillo
## 437 Armadillo homology type
## 438 %id. target Armadillo gene identical to query gene
## 439 %id. query gene identical to target Armadillo gene
## 440 Armadillo Gene-order conservation score
## 441 Armadillo Whole-genome alignment coverage
## 442 Armadillo orthology confidence [0 low, 1 high]
## 443 Asian bonytongue gene stable ID
## 444 Asian bonytongue gene name
## 445 Asian bonytongue protein or transcript stable ID
## 446 Asian bonytongue chromosome/scaffold name
## 447 Asian bonytongue chromosome/scaffold start (bp)
## 448 Asian bonytongue chromosome/scaffold end (bp)
## 449 Query protein or transcript ID
## 450 Last common ancestor with Asian bonytongue
## 451 Asian bonytongue homology type
## 452 %id. target Asian bonytongue gene identical to query gene
## 453 %id. query gene identical to target Asian bonytongue gene
## 454 Asian bonytongue Gene-order conservation score
## 455 Asian bonytongue Whole-genome alignment coverage
## 456 Asian bonytongue orthology confidence [0 low, 1 high]
## 457 Atlantic cod gene stable ID
## 458 Atlantic cod gene name
## 459 Atlantic cod protein or transcript stable ID
## 460 Atlantic cod chromosome/scaffold name
## 461 Atlantic cod chromosome/scaffold start (bp)
## 462 Atlantic cod chromosome/scaffold end (bp)
## 463 Query protein or transcript ID
## 464 Last common ancestor with Atlantic cod
## 465 Atlantic cod homology type
## 466 %id. target Atlantic cod gene identical to query gene
## 467 %id. query gene identical to target Atlantic cod gene
## 468 Atlantic cod Gene-order conservation score
## 469 Atlantic cod orthology confidence [0 low, 1 high]
## 470 Atlantic herring gene stable ID
## 471 Atlantic herring gene name
## 472 Atlantic herring protein or transcript stable ID
## 473 Atlantic herring chromosome/scaffold name
## 474 Atlantic herring chromosome/scaffold start (bp)
## 475 Atlantic herring chromosome/scaffold end (bp)
## 476 Query protein or transcript ID
## 477 Last common ancestor with Atlantic herring
## 478 Atlantic herring homology type
## 479 %id. target Atlantic herring gene identical to query gene
## 480 %id. query gene identical to target Atlantic herring gene
## 481 Atlantic herring Gene-order conservation score
## 482 Atlantic herring Whole-genome alignment coverage
## 483 Atlantic herring orthology confidence [0 low, 1 high]
## 484 Atlantic salmon gene stable ID
## 485 Atlantic salmon gene name
## 486 Atlantic salmon protein or transcript stable ID
## 487 Atlantic salmon chromosome/scaffold name
## 488 Atlantic salmon chromosome/scaffold start (bp)
## 489 Atlantic salmon chromosome/scaffold end (bp)
## 490 Query protein or transcript ID
## 491 Last common ancestor with Atlantic salmon
## 492 Atlantic salmon homology type
## 493 %id. target Atlantic salmon gene identical to query gene
## 494 %id. query gene identical to target Atlantic salmon gene
## 495 Atlantic salmon Gene-order conservation score
## 496 Atlantic salmon orthology confidence [0 low, 1 high]
## 497 Australian saltwater crocodile gene stable ID
## 498 Australian saltwater crocodile gene name
## 499 Australian saltwater crocodile protein or transcript stable ID
## 500 Australian saltwater crocodile chromosome/scaffold name
## 501 Australian saltwater crocodile chromosome/scaffold start (bp)
## 502 Australian saltwater crocodile chromosome/scaffold end (bp)
## 503 Query protein or transcript ID
## 504 Last common ancestor with Australian saltwater crocodile
## 505 Australian saltwater crocodile homology type
## 506 %id. target Australian saltwater crocodile gene identical to query gene
## 507 %id. query gene identical to target Australian saltwater crocodile gene
## 508 Australian saltwater crocodile Gene-order conservation score
## 509 Australian saltwater crocodile Whole-genome alignment coverage
## 510 Australian saltwater crocodile orthology confidence [0 low, 1 high]
## 511 Ballan wrasse gene stable ID
## 512 Ballan wrasse gene name
## 513 Ballan wrasse protein or transcript stable ID
## 514 Ballan wrasse chromosome/scaffold name
## 515 Ballan wrasse chromosome/scaffold start (bp)
## 516 Ballan wrasse chromosome/scaffold end (bp)
## 517 Query protein or transcript ID
## 518 Last common ancestor with Ballan wrasse
## 519 Ballan wrasse homology type
## 520 %id. target Ballan wrasse gene identical to query gene
## 521 %id. query gene identical to target Ballan wrasse gene
## 522 Ballan wrasse Gene-order conservation score
## 523 Ballan wrasse Whole-genome alignment coverage
## 524 Ballan wrasse orthology confidence [0 low, 1 high]
## 525 Barramundi perch gene stable ID
## 526 Barramundi perch gene name
## 527 Barramundi perch protein or transcript stable ID
## 528 Barramundi perch chromosome/scaffold name
## 529 Barramundi perch chromosome/scaffold start (bp)
## 530 Barramundi perch chromosome/scaffold end (bp)
## 531 Query protein or transcript ID
## 532 Last common ancestor with Barramundi perch
## 533 Barramundi perch homology type
## 534 %id. target Barramundi perch gene identical to query gene
## 535 %id. query gene identical to target Barramundi perch gene
## 536 Barramundi perch Gene-order conservation score
## 537 Barramundi perch Whole-genome alignment coverage
## 538 Barramundi perch orthology confidence [0 low, 1 high]
## 539 Beluga whale gene stable ID
## 540 Beluga whale gene name
## 541 Beluga whale protein or transcript stable ID
## 542 Beluga whale chromosome/scaffold name
## 543 Beluga whale chromosome/scaffold start (bp)
## 544 Beluga whale chromosome/scaffold end (bp)
## 545 Query protein or transcript ID
## 546 Last common ancestor with Beluga whale
## 547 Beluga whale homology type
## 548 %id. target Beluga whale gene identical to query gene
## 549 %id. query gene identical to target Beluga whale gene
## 550 Beluga whale Gene-order conservation score
## 551 Beluga whale Whole-genome alignment coverage
## 552 Beluga whale orthology confidence [0 low, 1 high]
## 553 Bicolor damselfish gene stable ID
## 554 Bicolor damselfish gene name
## 555 Bicolor damselfish protein or transcript stable ID
## 556 Bicolor damselfish chromosome/scaffold name
## 557 Bicolor damselfish chromosome/scaffold start (bp)
## 558 Bicolor damselfish chromosome/scaffold end (bp)
## 559 Query protein or transcript ID
## 560 Last common ancestor with Bicolor damselfish
## 561 Bicolor damselfish homology type
## 562 %id. target Bicolor damselfish gene identical to query gene
## 563 %id. query gene identical to target Bicolor damselfish gene
## 564 Bicolor damselfish Gene-order conservation score
## 565 Bicolor damselfish Whole-genome alignment coverage
## 566 Bicolor damselfish orthology confidence [0 low, 1 high]
## 567 Black snub-nosed monkey gene stable ID
## 568 Black snub-nosed monkey gene name
## 569 Black snub-nosed monkey protein or transcript stable ID
## 570 Black snub-nosed monkey chromosome/scaffold name
## 571 Black snub-nosed monkey chromosome/scaffold start (bp)
## 572 Black snub-nosed monkey chromosome/scaffold end (bp)
## 573 Query protein or transcript ID
## 574 Last common ancestor with Black snub-nosed monkey
## 575 Black snub-nosed monkey homology type
## 576 %id. target Black snub-nosed monkey gene identical to query gene
## 577 %id. query gene identical to target Black snub-nosed monkey gene
## 578 Black snub-nosed monkey Gene-order conservation score
## 579 Black snub-nosed monkey Whole-genome alignment coverage
## 580 Black snub-nosed monkey orthology confidence [0 low, 1 high]
## 581 Blue whale gene stable ID
## 582 Blue whale gene name
## 583 Blue whale protein or transcript stable ID
## 584 Blue whale chromosome/scaffold name
## 585 Blue whale chromosome/scaffold start (bp)
## 586 Blue whale chromosome/scaffold end (bp)
## 587 Query protein or transcript ID
## 588 Last common ancestor with Blue whale
## 589 Blue whale homology type
## 590 %id. target Blue whale gene identical to query gene
## 591 %id. query gene identical to target Blue whale gene
## 592 Blue whale Gene-order conservation score
## 593 Blue whale Whole-genome alignment coverage
## 594 Blue whale orthology confidence [0 low, 1 high]
## 595 Blue-ringed sea krait gene stable ID
## 596 Blue-ringed sea krait gene name
## 597 Blue-ringed sea krait protein or transcript stable ID
## 598 Blue-ringed sea krait chromosome/scaffold name
## 599 Blue-ringed sea krait chromosome/scaffold start (bp)
## 600 Blue-ringed sea krait chromosome/scaffold end (bp)
## 601 Query protein or transcript ID
## 602 Last common ancestor with Blue-ringed sea krait
## 603 Blue-ringed sea krait homology type
## 604 %id. target Blue-ringed sea krait gene identical to query gene
## 605 %id. query gene identical to target Blue-ringed sea krait gene
## 606 Blue-ringed sea krait Gene-order conservation score
## 607 Blue-ringed sea krait Whole-genome alignment coverage
## 608 Blue-ringed sea krait orthology confidence [0 low, 1 high]
## 609 Bolivian squirrel monkey gene stable ID
## 610 Bolivian squirrel monkey gene name
## 611 Bolivian squirrel monkey protein or transcript stable ID
## 612 Bolivian squirrel monkey chromosome/scaffold name
## 613 Bolivian squirrel monkey chromosome/scaffold start (bp)
## 614 Bolivian squirrel monkey chromosome/scaffold end (bp)
## 615 Query protein or transcript ID
## 616 Last common ancestor with Bolivian squirrel monkey
## 617 Bolivian squirrel monkey homology type
## 618 %id. target Bolivian squirrel monkey gene identical to query gene
## 619 %id. query gene identical to target Bolivian squirrel monkey gene
## 620 Bolivian squirrel monkey Gene-order conservation score
## 621 Bolivian squirrel monkey Whole-genome alignment coverage
## 622 Bolivian squirrel monkey orthology confidence [0 low, 1 high]
## 623 Bonobo gene stable ID
## 624 Bonobo gene name
## 625 Bonobo protein or transcript stable ID
## 626 Bonobo chromosome/scaffold name
## 627 Bonobo chromosome/scaffold start (bp)
## 628 Bonobo chromosome/scaffold end (bp)
## 629 Query protein or transcript ID
## 630 Last common ancestor with Bonobo
## 631 Bonobo homology type
## 632 %id. target Bonobo gene identical to query gene
## 633 %id. query gene identical to target Bonobo gene
## 634 Bonobo Gene-order conservation score
## 635 Bonobo Whole-genome alignment coverage
## 636 Bonobo orthology confidence [0 low, 1 high]
## 637 Brown trout gene stable ID
## 638 Brown trout gene name
## 639 Brown trout protein or transcript stable ID
## 640 Brown trout chromosome/scaffold name
## 641 Brown trout chromosome/scaffold start (bp)
## 642 Brown trout chromosome/scaffold end (bp)
## 643 Query protein or transcript ID
## 644 Last common ancestor with Brown trout
## 645 Brown trout homology type
## 646 %id. target Brown trout gene identical to query gene
## 647 %id. query gene identical to target Brown trout gene
## 648 Brown trout Gene-order conservation score
## 649 Brown trout Whole-genome alignment coverage
## 650 Brown trout orthology confidence [0 low, 1 high]
## 651 Burton's mouthbrooder gene stable ID
## 652 Burton's mouthbrooder gene name
## 653 Burton's mouthbrooder protein or transcript stable ID
## 654 Burton's mouthbrooder chromosome/scaffold name
## 655 Burton's mouthbrooder chromosome/scaffold start (bp)
## 656 Burton's mouthbrooder chromosome/scaffold end (bp)
## 657 Query protein or transcript ID
## 658 Last common ancestor with Burton's mouthbrooder
## 659 Burton's mouthbrooder homology type
## 660 %id. target Burton's mouthbrooder gene identical to query gene
## 661 %id. query gene identical to target Burton's mouthbrooder gene
## 662 Burton's mouthbrooder Gene-order conservation score
## 663 Burton's mouthbrooder Whole-genome alignment coverage
## 664 Burton's mouthbrooder orthology confidence [0 low, 1 high]
## 665 Bushbaby gene stable ID
## 666 Bushbaby gene name
## 667 Bushbaby protein or transcript stable ID
## 668 Bushbaby chromosome/scaffold name
## 669 Bushbaby chromosome/scaffold start (bp)
## 670 Bushbaby chromosome/scaffold end (bp)
## 671 Query protein or transcript ID
## 672 Last common ancestor with Bushbaby
## 673 Bushbaby homology type
## 674 %id. target Bushbaby gene identical to query gene
## 675 %id. query gene identical to target Bushbaby gene
## 676 Bushbaby Gene-order conservation score
## 677 Bushbaby Whole-genome alignment coverage
## 678 Bushbaby orthology confidence [0 low, 1 high]
## 679 C.intestinalis gene stable ID
## 680 C.intestinalis gene name
## 681 C.intestinalis protein or transcript stable ID
## 682 C.intestinalis chromosome/scaffold name
## 683 C.intestinalis chromosome/scaffold start (bp)
## 684 C.intestinalis chromosome/scaffold end (bp)
## 685 Query protein or transcript ID
## 686 Last common ancestor with C.intestinalis
## 687 C.intestinalis homology type
## 688 %id. target C.intestinalis gene identical to query gene
## 689 %id. query gene identical to target C.intestinalis gene
## 690 C.intestinalis Whole-genome alignment coverage
## 691 C.intestinalis orthology confidence [0 low, 1 high]
## 692 C.savignyi gene stable ID
## 693 C.savignyi gene name
## 694 C.savignyi protein or transcript stable ID
## 695 C.savignyi chromosome/scaffold name
## 696 C.savignyi chromosome/scaffold start (bp)
## 697 C.savignyi chromosome/scaffold end (bp)
## 698 Query protein or transcript ID
## 699 Last common ancestor with C.savignyi
## 700 C.savignyi homology type
## 701 %id. target C.savignyi gene identical to query gene
## 702 %id. query gene identical to target C.savignyi gene
## 703 C.savignyi Whole-genome alignment coverage
## 704 C.savignyi orthology confidence [0 low, 1 high]
## 705 Caenorhabditis elegans (PRJNA13758) gene stable ID
## 706 Caenorhabditis elegans (PRJNA13758) gene name
## 707 Caenorhabditis elegans (PRJNA13758) protein or transcript stable ID
## 708 Caenorhabditis elegans (PRJNA13758) chromosome/scaffold name
## 709 Caenorhabditis elegans (PRJNA13758) chromosome/scaffold start (bp)
## 710 Caenorhabditis elegans (PRJNA13758) chromosome/scaffold end (bp)
## 711 Query protein or transcript ID
## 712 Last common ancestor with Caenorhabditis elegans (PRJNA13758)
## 713 Caenorhabditis elegans (PRJNA13758) homology type
## 714 %id. target Caenorhabditis elegans (PRJNA13758) gene identical to query gene
## 715 %id. query gene identical to target Caenorhabditis elegans (PRJNA13758) gene
## 716 Caenorhabditis elegans (PRJNA13758) orthology confidence [0 low, 1 high]
## 717 Cat gene stable ID
## 718 Cat gene name
## 719 Cat protein or transcript stable ID
## 720 Cat chromosome/scaffold name
## 721 Cat chromosome/scaffold start (bp)
## 722 Cat chromosome/scaffold end (bp)
## 723 Query protein or transcript ID
## 724 Last common ancestor with Cat
## 725 Cat homology type
## 726 %id. target Cat gene identical to query gene
## 727 %id. query gene identical to target Cat gene
## 728 Cat Gene-order conservation score
## 729 Cat Whole-genome alignment coverage
## 730 Cat orthology confidence [0 low, 1 high]
## 731 Chacoan peccary gene stable ID
## 732 Chacoan peccary gene name
## 733 Chacoan peccary protein or transcript stable ID
## 734 Chacoan peccary chromosome/scaffold name
## 735 Chacoan peccary chromosome/scaffold start (bp)
## 736 Chacoan peccary chromosome/scaffold end (bp)
## 737 Query protein or transcript ID
## 738 Last common ancestor with Chacoan peccary
## 739 Chacoan peccary homology type
## 740 %id. target Chacoan peccary gene identical to query gene
## 741 %id. query gene identical to target Chacoan peccary gene
## 742 Chacoan peccary Gene-order conservation score
## 743 Chacoan peccary Whole-genome alignment coverage
## 744 Chacoan peccary orthology confidence [0 low, 1 high]
## 745 Channel bull blenny gene stable ID
## 746 Channel bull blenny gene name
## 747 Channel bull blenny protein or transcript stable ID
## 748 Channel bull blenny chromosome/scaffold name
## 749 Channel bull blenny chromosome/scaffold start (bp)
## 750 Channel bull blenny chromosome/scaffold end (bp)
## 751 Query protein or transcript ID
## 752 Last common ancestor with Channel bull blenny
## 753 Channel bull blenny homology type
## 754 %id. target Channel bull blenny gene identical to query gene
## 755 %id. query gene identical to target Channel bull blenny gene
## 756 Channel bull blenny Gene-order conservation score
## 757 Channel bull blenny Whole-genome alignment coverage
## 758 Channel bull blenny orthology confidence [0 low, 1 high]
## 759 Channel catfish gene stable ID
## 760 Channel catfish gene name
## 761 Channel catfish protein or transcript stable ID
## 762 Channel catfish chromosome/scaffold name
## 763 Channel catfish chromosome/scaffold start (bp)
## 764 Channel catfish chromosome/scaffold end (bp)
## 765 Query protein or transcript ID
## 766 Last common ancestor with Channel catfish
## 767 Channel catfish homology type
## 768 %id. target Channel catfish gene identical to query gene
## 769 %id. query gene identical to target Channel catfish gene
## 770 Channel catfish Gene-order conservation score
## 771 Channel catfish Whole-genome alignment coverage
## 772 Channel catfish orthology confidence [0 low, 1 high]
## 773 Chicken gene stable ID
## 774 Chicken gene name
## 775 Chicken protein or transcript stable ID
## 776 Chicken chromosome/scaffold name
## 777 Chicken chromosome/scaffold start (bp)
## 778 Chicken chromosome/scaffold end (bp)
## 779 Query protein or transcript ID
## 780 Last common ancestor with Chicken
## 781 Chicken homology type
## 782 %id. target Chicken gene identical to query gene
## 783 %id. query gene identical to target Chicken gene
## 784 Chicken Gene-order conservation score
## 785 Chicken Whole-genome alignment coverage
## 786 Chicken orthology confidence [0 low, 1 high]
## 787 Chimpanzee gene stable ID
## 788 Chimpanzee gene name
## 789 Chimpanzee protein or transcript stable ID
## 790 Chimpanzee chromosome/scaffold name
## 791 Chimpanzee chromosome/scaffold start (bp)
## 792 Chimpanzee chromosome/scaffold end (bp)
## 793 Query protein or transcript ID
## 794 Last common ancestor with Chimpanzee
## 795 Chimpanzee homology type
## 796 %id. target Chimpanzee gene identical to query gene
## 797 %id. query gene identical to target Chimpanzee gene
## 798 Chimpanzee Gene-order conservation score
## 799 Chimpanzee Whole-genome alignment coverage
## 800 Chimpanzee orthology confidence [0 low, 1 high]
## 801 Chinese hamster CHOK1GS gene stable ID
## 802 Chinese hamster CHOK1GS gene name
## 803 Chinese hamster CHOK1GS protein or transcript stable ID
## 804 Chinese hamster CHOK1GS chromosome/scaffold name
## 805 Chinese hamster CHOK1GS chromosome/scaffold start (bp)
## 806 Chinese hamster CHOK1GS chromosome/scaffold end (bp)
## 807 Query protein or transcript ID
## 808 Last common ancestor with Chinese hamster CHOK1GS
## 809 Chinese hamster CHOK1GS homology type
## 810 %id. target Chinese hamster CHOK1GS gene identical to query gene
## 811 %id. query gene identical to target Chinese hamster CHOK1GS gene
## 812 Chinese hamster CHOK1GS Gene-order conservation score
## 813 Chinese hamster CHOK1GS Whole-genome alignment coverage
## 814 Chinese hamster CHOK1GS orthology confidence [0 low, 1 high]
## 815 Chinese medaka gene stable ID
## 816 Chinese medaka gene name
## 817 Chinese medaka protein or transcript stable ID
## 818 Chinese medaka chromosome/scaffold name
## 819 Chinese medaka chromosome/scaffold start (bp)
## 820 Chinese medaka chromosome/scaffold end (bp)
## 821 Query protein or transcript ID
## 822 Last common ancestor with Chinese medaka
## 823 Chinese medaka homology type
## 824 %id. target Chinese medaka gene identical to query gene
## 825 %id. query gene identical to target Chinese medaka gene
## 826 Chinese medaka Gene-order conservation score
## 827 Chinese medaka Whole-genome alignment coverage
## 828 Chinese medaka orthology confidence [0 low, 1 high]
## 829 Chinese softshell turtle gene stable ID
## 830 Chinese softshell turtle gene name
## 831 Chinese softshell turtle protein or transcript stable ID
## 832 Chinese softshell turtle chromosome/scaffold name
## 833 Chinese softshell turtle chromosome/scaffold start (bp)
## 834 Chinese softshell turtle chromosome/scaffold end (bp)
## 835 Query protein or transcript ID
## 836 Last common ancestor with Chinese softshell turtle
## 837 Chinese softshell turtle homology type
## 838 %id. target Chinese softshell turtle gene identical to query gene
## 839 %id. query gene identical to target Chinese softshell turtle gene
## 840 Chinese softshell turtle Gene-order conservation score
## 841 Chinese softshell turtle Whole-genome alignment coverage
## 842 Chinese softshell turtle orthology confidence [0 low, 1 high]
## 843 Chinook salmon gene stable ID
## 844 Chinook salmon gene name
## 845 Chinook salmon protein or transcript stable ID
## 846 Chinook salmon chromosome/scaffold name
## 847 Chinook salmon chromosome/scaffold start (bp)
## 848 Chinook salmon chromosome/scaffold end (bp)
## 849 Query protein or transcript ID
## 850 Last common ancestor with Chinook salmon
## 851 Chinook salmon homology type
## 852 %id. target Chinook salmon gene identical to query gene
## 853 %id. query gene identical to target Chinook salmon gene
## 854 Chinook salmon Gene-order conservation score
## 855 Chinook salmon Whole-genome alignment coverage
## 856 Chinook salmon orthology confidence [0 low, 1 high]
## 857 Climbing perch gene stable ID
## 858 Climbing perch gene name
## 859 Climbing perch protein or transcript stable ID
## 860 Climbing perch chromosome/scaffold name
## 861 Climbing perch chromosome/scaffold start (bp)
## 862 Climbing perch chromosome/scaffold end (bp)
## 863 Query protein or transcript ID
## 864 Last common ancestor with Climbing perch
## 865 Climbing perch homology type
## 866 %id. target Climbing perch gene identical to query gene
## 867 %id. query gene identical to target Climbing perch gene
## 868 Climbing perch Gene-order conservation score
## 869 Climbing perch orthology confidence [0 low, 1 high]
## 870 Clown anemonefish gene stable ID
## 871 Clown anemonefish gene name
## 872 Clown anemonefish protein or transcript stable ID
## 873 Clown anemonefish chromosome/scaffold name
## 874 Clown anemonefish chromosome/scaffold start (bp)
## 875 Clown anemonefish chromosome/scaffold end (bp)
## 876 Query protein or transcript ID
## 877 Last common ancestor with Clown anemonefish
## 878 Clown anemonefish homology type
## 879 %id. target Clown anemonefish gene identical to query gene
## 880 %id. query gene identical to target Clown anemonefish gene
## 881 Clown anemonefish Gene-order conservation score
## 882 Clown anemonefish Whole-genome alignment coverage
## 883 Clown anemonefish orthology confidence [0 low, 1 high]
## 884 Coelacanth gene stable ID
## 885 Coelacanth gene name
## 886 Coelacanth protein or transcript stable ID
## 887 Coelacanth chromosome/scaffold name
## 888 Coelacanth chromosome/scaffold start (bp)
## 889 Coelacanth chromosome/scaffold end (bp)
## 890 Query protein or transcript ID
## 891 Last common ancestor with Coelacanth
## 892 Coelacanth homology type
## 893 %id. target Coelacanth gene identical to query gene
## 894 %id. query gene identical to target Coelacanth gene
## 895 Coelacanth Gene-order conservation score
## 896 Coelacanth Whole-genome alignment coverage
## 897 Coelacanth orthology confidence [0 low, 1 high]
## 898 Coho salmon gene stable ID
## 899 Coho salmon gene name
## 900 Coho salmon protein or transcript stable ID
## 901 Coho salmon chromosome/scaffold name
## 902 Coho salmon chromosome/scaffold start (bp)
## 903 Coho salmon chromosome/scaffold end (bp)
## 904 Query protein or transcript ID
## 905 Last common ancestor with Coho salmon
## 906 Coho salmon homology type
## 907 %id. target Coho salmon gene identical to query gene
## 908 %id. query gene identical to target Coho salmon gene
## 909 Coho salmon Gene-order conservation score
## 910 Coho salmon Whole-genome alignment coverage
## 911 Coho salmon orthology confidence [0 low, 1 high]
## 912 Collared flycatcher gene stable ID
## 913 Collared flycatcher gene name
## 914 Collared flycatcher protein or transcript stable ID
## 915 Collared flycatcher chromosome/scaffold name
## 916 Collared flycatcher chromosome/scaffold start (bp)
## 917 Collared flycatcher chromosome/scaffold end (bp)
## 918 Query protein or transcript ID
## 919 Last common ancestor with Collared flycatcher
## 920 Collared flycatcher homology type
## 921 %id. target Collared flycatcher gene identical to query gene
## 922 %id. query gene identical to target Collared flycatcher gene
## 923 Collared flycatcher Gene-order conservation score
## 924 Collared flycatcher orthology confidence [0 low, 1 high]
## 925 Common canary gene stable ID
## 926 Common canary gene name
## 927 Common canary protein or transcript stable ID
## 928 Common canary chromosome/scaffold name
## 929 Common canary chromosome/scaffold start (bp)
## 930 Common canary chromosome/scaffold end (bp)
## 931 Query protein or transcript ID
## 932 Last common ancestor with Common canary
## 933 Common canary homology type
## 934 %id. target Common canary gene identical to query gene
## 935 %id. query gene identical to target Common canary gene
## 936 Common canary Gene-order conservation score
## 937 Common canary Whole-genome alignment coverage
## 938 Common canary orthology confidence [0 low, 1 high]
## 939 Common carp gene stable ID
## 940 Common carp gene name
## 941 Common carp protein or transcript stable ID
## 942 Common carp chromosome/scaffold name
## 943 Common carp chromosome/scaffold start (bp)
## 944 Common carp chromosome/scaffold end (bp)
## 945 Query protein or transcript ID
## 946 Last common ancestor with Common carp
## 947 Common carp homology type
## 948 %id. target Common carp gene identical to query gene
## 949 %id. query gene identical to target Common carp gene
## 950 Common carp Gene-order conservation score
## 951 Common carp orthology confidence [0 low, 1 high]
## 952 Common wall lizard gene stable ID
## 953 Common wall lizard gene name
## 954 Common wall lizard protein or transcript stable ID
## 955 Common wall lizard chromosome/scaffold name
## 956 Common wall lizard chromosome/scaffold start (bp)
## 957 Common wall lizard chromosome/scaffold end (bp)
## 958 Query protein or transcript ID
## 959 Last common ancestor with Common wall lizard
## 960 Common wall lizard homology type
## 961 %id. target Common wall lizard gene identical to query gene
## 962 %id. query gene identical to target Common wall lizard gene
## 963 Common wall lizard Gene-order conservation score
## 964 Common wall lizard Whole-genome alignment coverage
## 965 Common wall lizard orthology confidence [0 low, 1 high]
## 966 Common wombat gene stable ID
## 967 Common wombat gene name
## 968 Common wombat protein or transcript stable ID
## 969 Common wombat chromosome/scaffold name
## 970 Common wombat chromosome/scaffold start (bp)
## 971 Common wombat chromosome/scaffold end (bp)
## 972 Query protein or transcript ID
## 973 Last common ancestor with Common wombat
## 974 Common wombat homology type
## 975 %id. target Common wombat gene identical to query gene
## 976 %id. query gene identical to target Common wombat gene
## 977 Common wombat Gene-order conservation score
## 978 Common wombat Whole-genome alignment coverage
## 979 Common wombat orthology confidence [0 low, 1 high]
## 980 Coquerel's sifaka gene stable ID
## 981 Coquerel's sifaka gene name
## 982 Coquerel's sifaka protein or transcript stable ID
## 983 Coquerel's sifaka chromosome/scaffold name
## 984 Coquerel's sifaka chromosome/scaffold start (bp)
## 985 Coquerel's sifaka chromosome/scaffold end (bp)
## 986 Query protein or transcript ID
## 987 Last common ancestor with Coquerel's sifaka
## 988 Coquerel's sifaka homology type
## 989 %id. target Coquerel's sifaka gene identical to query gene
## 990 %id. query gene identical to target Coquerel's sifaka gene
## 991 Coquerel's sifaka Gene-order conservation score
## 992 Coquerel's sifaka Whole-genome alignment coverage
## 993 Coquerel's sifaka orthology confidence [0 low, 1 high]
## 994 Cow gene stable ID
## 995 Cow gene name
## 996 Cow protein or transcript stable ID
## 997 Cow chromosome/scaffold name
## 998 Cow chromosome/scaffold start (bp)
## 999 Cow chromosome/scaffold end (bp)
## 1000 Query protein or transcript ID
## 1001 Last common ancestor with Cow
## 1002 Cow homology type
## 1003 %id. target Cow gene identical to query gene
## 1004 %id. query gene identical to target Cow gene
## 1005 Cow Gene-order conservation score
## 1006 Cow Whole-genome alignment coverage
## 1007 Cow orthology confidence [0 low, 1 high]
## 1008 Crab-eating macaque gene stable ID
## 1009 Crab-eating macaque gene name
## 1010 Crab-eating macaque protein or transcript stable ID
## 1011 Crab-eating macaque chromosome/scaffold name
## 1012 Crab-eating macaque chromosome/scaffold start (bp)
## 1013 Crab-eating macaque chromosome/scaffold end (bp)
## 1014 Query protein or transcript ID
## 1015 Last common ancestor with Crab-eating macaque
## 1016 Crab-eating macaque homology type
## 1017 %id. target Crab-eating macaque gene identical to query gene
## 1018 %id. query gene identical to target Crab-eating macaque gene
## 1019 Crab-eating macaque Gene-order conservation score
## 1020 Crab-eating macaque Whole-genome alignment coverage
## 1021 Crab-eating macaque orthology confidence [0 low, 1 high]
## 1022 Degu gene stable ID
## 1023 Degu gene name
## 1024 Degu protein or transcript stable ID
## 1025 Degu chromosome/scaffold name
## 1026 Degu chromosome/scaffold start (bp)
## 1027 Degu chromosome/scaffold end (bp)
## 1028 Query protein or transcript ID
## 1029 Last common ancestor with Degu
## 1030 Degu homology type
## 1031 %id. target Degu gene identical to query gene
## 1032 %id. query gene identical to target Degu gene
## 1033 Degu Gene-order conservation score
## 1034 Degu Whole-genome alignment coverage
## 1035 Degu orthology confidence [0 low, 1 high]
## 1036 Denticle herring gene stable ID
## 1037 Denticle herring gene name
## 1038 Denticle herring protein or transcript stable ID
## 1039 Denticle herring chromosome/scaffold name
## 1040 Denticle herring chromosome/scaffold start (bp)
## 1041 Denticle herring chromosome/scaffold end (bp)
## 1042 Query protein or transcript ID
## 1043 Last common ancestor with Denticle herring
## 1044 Denticle herring homology type
## 1045 %id. target Denticle herring gene identical to query gene
## 1046 %id. query gene identical to target Denticle herring gene
## 1047 Denticle herring Gene-order conservation score
## 1048 Denticle herring Whole-genome alignment coverage
## 1049 Denticle herring orthology confidence [0 low, 1 high]
## 1050 Dingo gene stable ID
## 1051 Dingo gene name
## 1052 Dingo protein or transcript stable ID
## 1053 Dingo chromosome/scaffold name
## 1054 Dingo chromosome/scaffold start (bp)
## 1055 Dingo chromosome/scaffold end (bp)
## 1056 Query protein or transcript ID
## 1057 Last common ancestor with Dingo
## 1058 Dingo homology type
## 1059 %id. target Dingo gene identical to query gene
## 1060 %id. query gene identical to target Dingo gene
## 1061 Dingo Gene-order conservation score
## 1062 Dingo Whole-genome alignment coverage
## 1063 Dingo orthology confidence [0 low, 1 high]
## 1064 Dog gene stable ID
## 1065 Dog gene name
## 1066 Dog protein or transcript stable ID
## 1067 Dog chromosome/scaffold name
## 1068 Dog chromosome/scaffold start (bp)
## 1069 Dog chromosome/scaffold end (bp)
## 1070 Query protein or transcript ID
## 1071 Last common ancestor with Dog
## 1072 Dog homology type
## 1073 %id. target Dog gene identical to query gene
## 1074 %id. query gene identical to target Dog gene
## 1075 Dog Gene-order conservation score
## 1076 Dog Whole-genome alignment coverage
## 1077 Dog orthology confidence [0 low, 1 high]
## 1078 Dolphin gene stable ID
## 1079 Dolphin gene name
## 1080 Dolphin protein or transcript stable ID
## 1081 Dolphin chromosome/scaffold name
## 1082 Dolphin chromosome/scaffold start (bp)
## 1083 Dolphin chromosome/scaffold end (bp)
## 1084 Query protein or transcript ID
## 1085 Last common ancestor with Dolphin
## 1086 Dolphin homology type
## 1087 %id. target Dolphin gene identical to query gene
## 1088 %id. query gene identical to target Dolphin gene
## 1089 Dolphin Gene-order conservation score
## 1090 Dolphin Whole-genome alignment coverage
## 1091 Dolphin orthology confidence [0 low, 1 high]
## 1092 Domestic yak gene stable ID
## 1093 Domestic yak gene name
## 1094 Domestic yak protein or transcript stable ID
## 1095 Domestic yak chromosome/scaffold name
## 1096 Domestic yak chromosome/scaffold start (bp)
## 1097 Domestic yak chromosome/scaffold end (bp)
## 1098 Query protein or transcript ID
## 1099 Last common ancestor with Domestic yak
## 1100 Domestic yak homology type
## 1101 %id. target Domestic yak gene identical to query gene
## 1102 %id. query gene identical to target Domestic yak gene
## 1103 Domestic yak Gene-order conservation score
## 1104 Domestic yak Whole-genome alignment coverage
## 1105 Domestic yak orthology confidence [0 low, 1 high]
## 1106 Donkey gene stable ID
## 1107 Donkey gene name
## 1108 Donkey protein or transcript stable ID
## 1109 Donkey chromosome/scaffold name
## 1110 Donkey chromosome/scaffold start (bp)
## 1111 Donkey chromosome/scaffold end (bp)
## 1112 Query protein or transcript ID
## 1113 Last common ancestor with Donkey
## 1114 Donkey homology type
## 1115 %id. target Donkey gene identical to query gene
## 1116 %id. query gene identical to target Donkey gene
## 1117 Donkey Gene-order conservation score
## 1118 Donkey orthology confidence [0 low, 1 high]
## 1119 Drill gene stable ID
## 1120 Drill gene name
## 1121 Drill protein or transcript stable ID
## 1122 Drill chromosome/scaffold name
## 1123 Drill chromosome/scaffold start (bp)
## 1124 Drill chromosome/scaffold end (bp)
## 1125 Query protein or transcript ID
## 1126 Last common ancestor with Drill
## 1127 Drill homology type
## 1128 %id. target Drill gene identical to query gene
## 1129 %id. query gene identical to target Drill gene
## 1130 Drill Gene-order conservation score
## 1131 Drill Whole-genome alignment coverage
## 1132 Drill orthology confidence [0 low, 1 high]
## 1133 Drosophila melanogaster gene stable ID
## 1134 Drosophila melanogaster gene name
## 1135 Drosophila melanogaster protein or transcript stable ID
## 1136 Drosophila melanogaster chromosome/scaffold name
## 1137 Drosophila melanogaster chromosome/scaffold start (bp)
## 1138 Drosophila melanogaster chromosome/scaffold end (bp)
## 1139 Query protein or transcript ID
## 1140 Last common ancestor with Drosophila melanogaster
## 1141 Drosophila melanogaster homology type
## 1142 %id. target Drosophila melanogaster gene identical to query gene
## 1143 %id. query gene identical to target Drosophila melanogaster gene
## 1144 Drosophila melanogaster orthology confidence [0 low, 1 high]
## 1145 Duck gene stable ID
## 1146 Duck gene name
## 1147 Duck protein or transcript stable ID
## 1148 Duck chromosome/scaffold name
## 1149 Duck chromosome/scaffold start (bp)
## 1150 Duck chromosome/scaffold end (bp)
## 1151 Query protein or transcript ID
## 1152 Last common ancestor with Duck
## 1153 Duck homology type
## 1154 %id. target Duck gene identical to query gene
## 1155 %id. query gene identical to target Duck gene
## 1156 Duck Gene-order conservation score
## 1157 Duck Whole-genome alignment coverage
## 1158 Duck orthology confidence [0 low, 1 high]
## 1159 Eastern brown snake gene stable ID
## 1160 Eastern brown snake gene name
## 1161 Eastern brown snake protein or transcript stable ID
## 1162 Eastern brown snake chromosome/scaffold name
## 1163 Eastern brown snake chromosome/scaffold start (bp)
## 1164 Eastern brown snake chromosome/scaffold end (bp)
## 1165 Query protein or transcript ID
## 1166 Last common ancestor with Eastern brown snake
## 1167 Eastern brown snake homology type
## 1168 %id. target Eastern brown snake gene identical to query gene
## 1169 %id. query gene identical to target Eastern brown snake gene
## 1170 Eastern brown snake Gene-order conservation score
## 1171 Eastern brown snake Whole-genome alignment coverage
## 1172 Eastern brown snake orthology confidence [0 low, 1 high]
## 1173 Eastern happy gene stable ID
## 1174 Eastern happy gene name
## 1175 Eastern happy protein or transcript stable ID
## 1176 Eastern happy chromosome/scaffold name
## 1177 Eastern happy chromosome/scaffold start (bp)
## 1178 Eastern happy chromosome/scaffold end (bp)
## 1179 Query protein or transcript ID
## 1180 Last common ancestor with Eastern happy
## 1181 Eastern happy homology type
## 1182 %id. target Eastern happy gene identical to query gene
## 1183 %id. query gene identical to target Eastern happy gene
## 1184 Eastern happy Gene-order conservation score
## 1185 Eastern happy Whole-genome alignment coverage
## 1186 Eastern happy orthology confidence [0 low, 1 high]
## 1187 Electric eel gene stable ID
## 1188 Electric eel gene name
## 1189 Electric eel protein or transcript stable ID
## 1190 Electric eel chromosome/scaffold name
## 1191 Electric eel chromosome/scaffold start (bp)
## 1192 Electric eel chromosome/scaffold end (bp)
## 1193 Query protein or transcript ID
## 1194 Last common ancestor with Electric eel
## 1195 Electric eel homology type
## 1196 %id. target Electric eel gene identical to query gene
## 1197 %id. query gene identical to target Electric eel gene
## 1198 Electric eel Gene-order conservation score
## 1199 Electric eel Whole-genome alignment coverage
## 1200 Electric eel orthology confidence [0 low, 1 high]
## 1201 Elephant gene stable ID
## 1202 Elephant gene name
## 1203 Elephant protein or transcript stable ID
## 1204 Elephant chromosome/scaffold name
## 1205 Elephant chromosome/scaffold start (bp)
## 1206 Elephant chromosome/scaffold end (bp)
## 1207 Query protein or transcript ID
## 1208 Last common ancestor with Elephant
## 1209 Elephant homology type
## 1210 %id. target Elephant gene identical to query gene
## 1211 %id. query gene identical to target Elephant gene
## 1212 Elephant Gene-order conservation score
## 1213 Elephant Whole-genome alignment coverage
## 1214 Elephant orthology confidence [0 low, 1 high]
## 1215 Elephant shark gene stable ID
## 1216 Elephant shark gene name
## 1217 Elephant shark protein or transcript stable ID
## 1218 Elephant shark chromosome/scaffold name
## 1219 Elephant shark chromosome/scaffold start (bp)
## 1220 Elephant shark chromosome/scaffold end (bp)
## 1221 Query protein or transcript ID
## 1222 Last common ancestor with Elephant shark
## 1223 Elephant shark homology type
## 1224 %id. target Elephant shark gene identical to query gene
## 1225 %id. query gene identical to target Elephant shark gene
## 1226 Elephant shark Whole-genome alignment coverage
## 1227 Elephant shark orthology confidence [0 low, 1 high]
## 1228 Eurasian red squirrel gene stable ID
## 1229 Eurasian red squirrel gene name
## 1230 Eurasian red squirrel protein or transcript stable ID
## 1231 Eurasian red squirrel chromosome/scaffold name
## 1232 Eurasian red squirrel chromosome/scaffold start (bp)
## 1233 Eurasian red squirrel chromosome/scaffold end (bp)
## 1234 Query protein or transcript ID
## 1235 Last common ancestor with Eurasian red squirrel
## 1236 Eurasian red squirrel homology type
## 1237 %id. target Eurasian red squirrel gene identical to query gene
## 1238 %id. query gene identical to target Eurasian red squirrel gene
## 1239 Eurasian red squirrel Gene-order conservation score
## 1240 Eurasian red squirrel Whole-genome alignment coverage
## 1241 Eurasian red squirrel orthology confidence [0 low, 1 high]
## 1242 European seabass gene stable ID
## 1243 European seabass gene name
## 1244 European seabass protein or transcript stable ID
## 1245 European seabass chromosome/scaffold name
## 1246 European seabass chromosome/scaffold start (bp)
## 1247 European seabass chromosome/scaffold end (bp)
## 1248 Query protein or transcript ID
## 1249 Last common ancestor with European seabass
## 1250 European seabass homology type
## 1251 %id. target European seabass gene identical to query gene
## 1252 %id. query gene identical to target European seabass gene
## 1253 European seabass Gene-order conservation score
## 1254 European seabass orthology confidence [0 low, 1 high]
## 1255 Ferret gene stable ID
## 1256 Ferret gene name
## 1257 Ferret protein or transcript stable ID
## 1258 Ferret chromosome/scaffold name
## 1259 Ferret chromosome/scaffold start (bp)
## 1260 Ferret chromosome/scaffold end (bp)
## 1261 Query protein or transcript ID
## 1262 Last common ancestor with Ferret
## 1263 Ferret homology type
## 1264 %id. target Ferret gene identical to query gene
## 1265 %id. query gene identical to target Ferret gene
## 1266 Ferret Gene-order conservation score
## 1267 Ferret Whole-genome alignment coverage
## 1268 Ferret orthology confidence [0 low, 1 high]
## 1269 Fugu gene stable ID
## 1270 Fugu gene name
## 1271 Fugu protein or transcript stable ID
## 1272 Fugu chromosome/scaffold name
## 1273 Fugu chromosome/scaffold start (bp)
## 1274 Fugu chromosome/scaffold end (bp)
## 1275 Query protein or transcript ID
## 1276 Last common ancestor with Fugu
## 1277 Fugu homology type
## 1278 %id. target Fugu gene identical to query gene
## 1279 %id. query gene identical to target Fugu gene
## 1280 Fugu Gene-order conservation score
## 1281 Fugu Whole-genome alignment coverage
## 1282 Fugu orthology confidence [0 low, 1 high]
## 1283 Giant panda gene stable ID
## 1284 Giant panda gene name
## 1285 Giant panda protein or transcript stable ID
## 1286 Giant panda chromosome/scaffold name
## 1287 Giant panda chromosome/scaffold start (bp)
## 1288 Giant panda chromosome/scaffold end (bp)
## 1289 Query protein or transcript ID
## 1290 Last common ancestor with Giant panda
## 1291 Giant panda homology type
## 1292 %id. target Giant panda gene identical to query gene
## 1293 %id. query gene identical to target Giant panda gene
## 1294 Giant panda Gene-order conservation score
## 1295 Giant panda orthology confidence [0 low, 1 high]
## 1296 Gibbon gene stable ID
## 1297 Gibbon gene name
## 1298 Gibbon protein or transcript stable ID
## 1299 Gibbon chromosome/scaffold name
## 1300 Gibbon chromosome/scaffold start (bp)
## 1301 Gibbon chromosome/scaffold end (bp)
## 1302 Query protein or transcript ID
## 1303 Last common ancestor with Gibbon
## 1304 Gibbon homology type
## 1305 %id. target Gibbon gene identical to query gene
## 1306 %id. query gene identical to target Gibbon gene
## 1307 Gibbon Gene-order conservation score
## 1308 Gibbon Whole-genome alignment coverage
## 1309 Gibbon orthology confidence [0 low, 1 high]
## 1310 Gilthead seabream gene stable ID
## 1311 Gilthead seabream gene name
## 1312 Gilthead seabream protein or transcript stable ID
## 1313 Gilthead seabream chromosome/scaffold name
## 1314 Gilthead seabream chromosome/scaffold start (bp)
## 1315 Gilthead seabream chromosome/scaffold end (bp)
## 1316 Query protein or transcript ID
## 1317 Last common ancestor with Gilthead seabream
## 1318 Gilthead seabream homology type
## 1319 %id. target Gilthead seabream gene identical to query gene
## 1320 %id. query gene identical to target Gilthead seabream gene
## 1321 Gilthead seabream Gene-order conservation score
## 1322 Gilthead seabream Whole-genome alignment coverage
## 1323 Gilthead seabream orthology confidence [0 low, 1 high]
## 1324 Goat gene stable ID
## 1325 Goat gene name
## 1326 Goat protein or transcript stable ID
## 1327 Goat chromosome/scaffold name
## 1328 Goat chromosome/scaffold start (bp)
## 1329 Goat chromosome/scaffold end (bp)
## 1330 Query protein or transcript ID
## 1331 Last common ancestor with Goat
## 1332 Goat homology type
## 1333 %id. target Goat gene identical to query gene
## 1334 %id. query gene identical to target Goat gene
## 1335 Goat Gene-order conservation score
## 1336 Goat Whole-genome alignment coverage
## 1337 Goat orthology confidence [0 low, 1 high]
## 1338 Golden Hamster gene stable ID
## 1339 Golden Hamster gene name
## 1340 Golden Hamster protein or transcript stable ID
## 1341 Golden Hamster chromosome/scaffold name
## 1342 Golden Hamster chromosome/scaffold start (bp)
## 1343 Golden Hamster chromosome/scaffold end (bp)
## 1344 Query protein or transcript ID
## 1345 Last common ancestor with Golden Hamster
## 1346 Golden Hamster homology type
## 1347 %id. target Golden Hamster gene identical to query gene
## 1348 %id. query gene identical to target Golden Hamster gene
## 1349 Golden Hamster Gene-order conservation score
## 1350 Golden Hamster Whole-genome alignment coverage
## 1351 Golden Hamster orthology confidence [0 low, 1 high]
## 1352 Golden eagle gene stable ID
## 1353 Golden eagle gene name
## 1354 Golden eagle protein or transcript stable ID
## 1355 Golden eagle chromosome/scaffold name
## 1356 Golden eagle chromosome/scaffold start (bp)
## 1357 Golden eagle chromosome/scaffold end (bp)
## 1358 Query protein or transcript ID
## 1359 Last common ancestor with Golden eagle
## 1360 Golden eagle homology type
## 1361 %id. target Golden eagle gene identical to query gene
## 1362 %id. query gene identical to target Golden eagle gene
## 1363 Golden eagle Gene-order conservation score
## 1364 Golden eagle Whole-genome alignment coverage
## 1365 Golden eagle orthology confidence [0 low, 1 high]
## 1366 Golden snub-nosed monkey gene stable ID
## 1367 Golden snub-nosed monkey gene name
## 1368 Golden snub-nosed monkey protein or transcript stable ID
## 1369 Golden snub-nosed monkey chromosome/scaffold name
## 1370 Golden snub-nosed monkey chromosome/scaffold start (bp)
## 1371 Golden snub-nosed monkey chromosome/scaffold end (bp)
## 1372 Query protein or transcript ID
## 1373 Last common ancestor with Golden snub-nosed monkey
## 1374 Golden snub-nosed monkey homology type
## 1375 %id. target Golden snub-nosed monkey gene identical to query gene
## 1376 %id. query gene identical to target Golden snub-nosed monkey gene
## 1377 Golden snub-nosed monkey Gene-order conservation score
## 1378 Golden snub-nosed monkey Whole-genome alignment coverage
## 1379 Golden snub-nosed monkey orthology confidence [0 low, 1 high]
## 1380 Golden-line barbel gene stable ID
## 1381 Golden-line barbel gene name
## 1382 Golden-line barbel protein or transcript stable ID
## 1383 Golden-line barbel chromosome/scaffold name
## 1384 Golden-line barbel chromosome/scaffold start (bp)
## 1385 Golden-line barbel chromosome/scaffold end (bp)
## 1386 Query protein or transcript ID
## 1387 Last common ancestor with Golden-line barbel
## 1388 Golden-line barbel homology type
## 1389 %id. target Golden-line barbel gene identical to query gene
## 1390 %id. query gene identical to target Golden-line barbel gene
## 1391 Golden-line barbel Gene-order conservation score
## 1392 Golden-line barbel Whole-genome alignment coverage
## 1393 Golden-line barbel orthology confidence [0 low, 1 high]
## 1394 Goldfish gene stable ID
## 1395 Goldfish gene name
## 1396 Goldfish protein or transcript stable ID
## 1397 Goldfish chromosome/scaffold name
## 1398 Goldfish chromosome/scaffold start (bp)
## 1399 Goldfish chromosome/scaffold end (bp)
## 1400 Query protein or transcript ID
## 1401 Last common ancestor with Goldfish
## 1402 Goldfish homology type
## 1403 %id. target Goldfish gene identical to query gene
## 1404 %id. query gene identical to target Goldfish gene
## 1405 Goldfish Gene-order conservation score
## 1406 Goldfish Whole-genome alignment coverage
## 1407 Goldfish orthology confidence [0 low, 1 high]
## 1408 Goodes thornscrub tortoise gene stable ID
## 1409 Goodes thornscrub tortoise gene name
## 1410 Goodes thornscrub tortoise protein or transcript stable ID
## 1411 Goodes thornscrub tortoise chromosome/scaffold name
## 1412 Goodes thornscrub tortoise chromosome/scaffold start (bp)
## 1413 Goodes thornscrub tortoise chromosome/scaffold end (bp)
## 1414 Query protein or transcript ID
## 1415 Last common ancestor with Goodes thornscrub tortoise
## 1416 Goodes thornscrub tortoise homology type
## 1417 %id. target Goodes thornscrub tortoise gene identical to query gene
## 1418 %id. query gene identical to target Goodes thornscrub tortoise gene
## 1419 Goodes thornscrub tortoise Gene-order conservation score
## 1420 Goodes thornscrub tortoise Whole-genome alignment coverage
## 1421 Goodes thornscrub tortoise orthology confidence [0 low, 1 high]
## 1422 Gorilla gene stable ID
## 1423 Gorilla gene name
## 1424 Gorilla protein or transcript stable ID
## 1425 Gorilla chromosome/scaffold name
## 1426 Gorilla chromosome/scaffold start (bp)
## 1427 Gorilla chromosome/scaffold end (bp)
## 1428 Query protein or transcript ID
## 1429 Last common ancestor with Gorilla
## 1430 Gorilla homology type
## 1431 %id. target Gorilla gene identical to query gene
## 1432 %id. query gene identical to target Gorilla gene
## 1433 Gorilla Gene-order conservation score
## 1434 Gorilla Whole-genome alignment coverage
## 1435 Gorilla orthology confidence [0 low, 1 high]
## 1436 Great Tit gene stable ID
## 1437 Great Tit gene name
## 1438 Great Tit protein or transcript stable ID
## 1439 Great Tit chromosome/scaffold name
## 1440 Great Tit chromosome/scaffold start (bp)
## 1441 Great Tit chromosome/scaffold end (bp)
## 1442 Query protein or transcript ID
## 1443 Last common ancestor with Great Tit
## 1444 Great Tit homology type
## 1445 %id. target Great Tit gene identical to query gene
## 1446 %id. query gene identical to target Great Tit gene
## 1447 Great Tit Gene-order conservation score
## 1448 Great Tit Whole-genome alignment coverage
## 1449 Great Tit orthology confidence [0 low, 1 high]
## 1450 Greater amberjack gene stable ID
## 1451 Greater amberjack gene name
## 1452 Greater amberjack protein or transcript stable ID
## 1453 Greater amberjack chromosome/scaffold name
## 1454 Greater amberjack chromosome/scaffold start (bp)
## 1455 Greater amberjack chromosome/scaffold end (bp)
## 1456 Query protein or transcript ID
## 1457 Last common ancestor with Greater amberjack
## 1458 Greater amberjack homology type
## 1459 %id. target Greater amberjack gene identical to query gene
## 1460 %id. query gene identical to target Greater amberjack gene
## 1461 Greater amberjack Gene-order conservation score
## 1462 Greater amberjack Whole-genome alignment coverage
## 1463 Greater amberjack orthology confidence [0 low, 1 high]
## 1464 Greater bamboo lemur gene stable ID
## 1465 Greater bamboo lemur gene name
## 1466 Greater bamboo lemur protein or transcript stable ID
## 1467 Greater bamboo lemur chromosome/scaffold name
## 1468 Greater bamboo lemur chromosome/scaffold start (bp)
## 1469 Greater bamboo lemur chromosome/scaffold end (bp)
## 1470 Query protein or transcript ID
## 1471 Last common ancestor with Greater bamboo lemur
## 1472 Greater bamboo lemur homology type
## 1473 %id. target Greater bamboo lemur gene identical to query gene
## 1474 %id. query gene identical to target Greater bamboo lemur gene
## 1475 Greater bamboo lemur Gene-order conservation score
## 1476 Greater bamboo lemur Whole-genome alignment coverage
## 1477 Greater bamboo lemur orthology confidence [0 low, 1 high]
## 1478 Greater horseshoe bat gene stable ID
## 1479 Greater horseshoe bat gene name
## 1480 Greater horseshoe bat protein or transcript stable ID
## 1481 Greater horseshoe bat chromosome/scaffold name
## 1482 Greater horseshoe bat chromosome/scaffold start (bp)
## 1483 Greater horseshoe bat chromosome/scaffold end (bp)
## 1484 Query protein or transcript ID
## 1485 Last common ancestor with Greater horseshoe bat
## 1486 Greater horseshoe bat homology type
## 1487 %id. target Greater horseshoe bat gene identical to query gene
## 1488 %id. query gene identical to target Greater horseshoe bat gene
## 1489 Greater horseshoe bat Gene-order conservation score
## 1490 Greater horseshoe bat Whole-genome alignment coverage
## 1491 Greater horseshoe bat orthology confidence [0 low, 1 high]
## 1492 Green anole gene stable ID
## 1493 Green anole gene name
## 1494 Green anole protein or transcript stable ID
## 1495 Green anole chromosome/scaffold name
## 1496 Green anole chromosome/scaffold start (bp)
## 1497 Green anole chromosome/scaffold end (bp)
## 1498 Query protein or transcript ID
## 1499 Last common ancestor with Green anole
## 1500 Green anole homology type
## 1501 %id. target Green anole gene identical to query gene
## 1502 %id. query gene identical to target Green anole gene
## 1503 Green anole Gene-order conservation score
## 1504 Green anole orthology confidence [0 low, 1 high]
## 1505 Guinea Pig gene stable ID
## 1506 Guinea Pig gene name
## 1507 Guinea Pig protein or transcript stable ID
## 1508 Guinea Pig chromosome/scaffold name
## 1509 Guinea Pig chromosome/scaffold start (bp)
## 1510 Guinea Pig chromosome/scaffold end (bp)
## 1511 Query protein or transcript ID
## 1512 Last common ancestor with Guinea Pig
## 1513 Guinea Pig homology type
## 1514 %id. target Guinea Pig gene identical to query gene
## 1515 %id. query gene identical to target Guinea Pig gene
## 1516 Guinea Pig Gene-order conservation score
## 1517 Guinea Pig Whole-genome alignment coverage
## 1518 Guinea Pig orthology confidence [0 low, 1 high]
## 1519 Guppy gene stable ID
## 1520 Guppy gene name
## 1521 Guppy protein or transcript stable ID
## 1522 Guppy chromosome/scaffold name
## 1523 Guppy chromosome/scaffold start (bp)
## 1524 Guppy chromosome/scaffold end (bp)
## 1525 Query protein or transcript ID
## 1526 Last common ancestor with Guppy
## 1527 Guppy homology type
## 1528 %id. target Guppy gene identical to query gene
## 1529 %id. query gene identical to target Guppy gene
## 1530 Guppy Gene-order conservation score
## 1531 Guppy Whole-genome alignment coverage
## 1532 Guppy orthology confidence [0 low, 1 high]
## 1533 Hagfish gene stable ID
## 1534 Hagfish gene name
## 1535 Hagfish protein or transcript stable ID
## 1536 Hagfish chromosome/scaffold name
## 1537 Hagfish chromosome/scaffold start (bp)
## 1538 Hagfish chromosome/scaffold end (bp)
## 1539 Query protein or transcript ID
## 1540 Last common ancestor with Hagfish
## 1541 Hagfish homology type
## 1542 %id. target Hagfish gene identical to query gene
## 1543 %id. query gene identical to target Hagfish gene
## 1544 Hagfish Whole-genome alignment coverage
## 1545 Hagfish orthology confidence [0 low, 1 high]
## 1546 Hedgehog gene stable ID
## 1547 Hedgehog gene name
## 1548 Hedgehog protein or transcript stable ID
## 1549 Hedgehog chromosome/scaffold name
## 1550 Hedgehog chromosome/scaffold start (bp)
## 1551 Hedgehog chromosome/scaffold end (bp)
## 1552 Query protein or transcript ID
## 1553 Last common ancestor with Hedgehog
## 1554 Hedgehog homology type
## 1555 %id. target Hedgehog gene identical to query gene
## 1556 %id. query gene identical to target Hedgehog gene
## 1557 Hedgehog Gene-order conservation score
## 1558 Hedgehog Whole-genome alignment coverage
## 1559 Hedgehog orthology confidence [0 low, 1 high]
## 1560 Horse gene stable ID
## 1561 Horse gene name
## 1562 Horse protein or transcript stable ID
## 1563 Horse chromosome/scaffold name
## 1564 Horse chromosome/scaffold start (bp)
## 1565 Horse chromosome/scaffold end (bp)
## 1566 Query protein or transcript ID
## 1567 Last common ancestor with Horse
## 1568 Horse homology type
## 1569 %id. target Horse gene identical to query gene
## 1570 %id. query gene identical to target Horse gene
## 1571 Horse Gene-order conservation score
## 1572 Horse Whole-genome alignment coverage
## 1573 Horse orthology confidence [0 low, 1 high]
## 1574 Huchen gene stable ID
## 1575 Huchen gene name
## 1576 Huchen protein or transcript stable ID
## 1577 Huchen chromosome/scaffold name
## 1578 Huchen chromosome/scaffold start (bp)
## 1579 Huchen chromosome/scaffold end (bp)
## 1580 Query protein or transcript ID
## 1581 Last common ancestor with Huchen
## 1582 Huchen homology type
## 1583 %id. target Huchen gene identical to query gene
## 1584 %id. query gene identical to target Huchen gene
## 1585 Huchen Gene-order conservation score
## 1586 Huchen Whole-genome alignment coverage
## 1587 Huchen orthology confidence [0 low, 1 high]
## 1588 Hybrid - Bos Indicus gene stable ID
## 1589 Hybrid - Bos Indicus gene name
## 1590 Hybrid - Bos Indicus protein or transcript stable ID
## 1591 Hybrid - Bos Indicus chromosome/scaffold name
## 1592 Hybrid - Bos Indicus chromosome/scaffold start (bp)
## 1593 Hybrid - Bos Indicus chromosome/scaffold end (bp)
## 1594 Query protein or transcript ID
## 1595 Last common ancestor with Hybrid - Bos Indicus
## 1596 Hybrid - Bos Indicus homology type
## 1597 %id. target Hybrid - Bos Indicus gene identical to query gene
## 1598 %id. query gene identical to target Hybrid - Bos Indicus gene
## 1599 Hybrid - Bos Indicus Gene-order conservation score
## 1600 Hybrid - Bos Indicus Whole-genome alignment coverage
## 1601 Hybrid - Bos Indicus orthology confidence [0 low, 1 high]
## 1602 Hyrax gene stable ID
## 1603 Hyrax gene name
## 1604 Hyrax protein or transcript stable ID
## 1605 Hyrax chromosome/scaffold name
## 1606 Hyrax chromosome/scaffold start (bp)
## 1607 Hyrax chromosome/scaffold end (bp)
## 1608 Query protein or transcript ID
## 1609 Last common ancestor with Hyrax
## 1610 Hyrax homology type
## 1611 %id. target Hyrax gene identical to query gene
## 1612 %id. query gene identical to target Hyrax gene
## 1613 Hyrax Gene-order conservation score
## 1614 Hyrax Whole-genome alignment coverage
## 1615 Hyrax orthology confidence [0 low, 1 high]
## 1616 Indian cobra gene stable ID
## 1617 Indian cobra gene name
## 1618 Indian cobra protein or transcript stable ID
## 1619 Indian cobra chromosome/scaffold name
## 1620 Indian cobra chromosome/scaffold start (bp)
## 1621 Indian cobra chromosome/scaffold end (bp)
## 1622 Query protein or transcript ID
## 1623 Last common ancestor with Indian cobra
## 1624 Indian cobra homology type
## 1625 %id. target Indian cobra gene identical to query gene
## 1626 %id. query gene identical to target Indian cobra gene
## 1627 Indian cobra Gene-order conservation score
## 1628 Indian cobra Whole-genome alignment coverage
## 1629 Indian cobra orthology confidence [0 low, 1 high]
## 1630 Indian medaka gene stable ID
## 1631 Indian medaka gene name
## 1632 Indian medaka protein or transcript stable ID
## 1633 Indian medaka chromosome/scaffold name
## 1634 Indian medaka chromosome/scaffold start (bp)
## 1635 Indian medaka chromosome/scaffold end (bp)
## 1636 Query protein or transcript ID
## 1637 Last common ancestor with Indian medaka
## 1638 Indian medaka homology type
## 1639 %id. target Indian medaka gene identical to query gene
## 1640 %id. query gene identical to target Indian medaka gene
## 1641 Indian medaka Gene-order conservation score
## 1642 Indian medaka Whole-genome alignment coverage
## 1643 Indian medaka orthology confidence [0 low, 1 high]
## 1644 Japanese medaka HdrR gene stable ID
## 1645 Japanese medaka HdrR gene name
## 1646 Japanese medaka HdrR protein or transcript stable ID
## 1647 Japanese medaka HdrR chromosome/scaffold name
## 1648 Japanese medaka HdrR chromosome/scaffold start (bp)
## 1649 Japanese medaka HdrR chromosome/scaffold end (bp)
## 1650 Query protein or transcript ID
## 1651 Last common ancestor with Japanese medaka HdrR
## 1652 Japanese medaka HdrR homology type
## 1653 %id. target Japanese medaka HdrR gene identical to query gene
## 1654 %id. query gene identical to target Japanese medaka HdrR gene
## 1655 Japanese medaka HdrR Gene-order conservation score
## 1656 Japanese medaka HdrR Whole-genome alignment coverage
## 1657 Japanese medaka HdrR orthology confidence [0 low, 1 high]
## 1658 Japanese quail gene stable ID
## 1659 Japanese quail gene name
## 1660 Japanese quail protein or transcript stable ID
## 1661 Japanese quail chromosome/scaffold name
## 1662 Japanese quail chromosome/scaffold start (bp)
## 1663 Japanese quail chromosome/scaffold end (bp)
## 1664 Query protein or transcript ID
## 1665 Last common ancestor with Japanese quail
## 1666 Japanese quail homology type
## 1667 %id. target Japanese quail gene identical to query gene
## 1668 %id. query gene identical to target Japanese quail gene
## 1669 Japanese quail Gene-order conservation score
## 1670 Japanese quail Whole-genome alignment coverage
## 1671 Japanese quail orthology confidence [0 low, 1 high]
## 1672 Javanese ricefish gene stable ID
## 1673 Javanese ricefish gene name
## 1674 Javanese ricefish protein or transcript stable ID
## 1675 Javanese ricefish chromosome/scaffold name
## 1676 Javanese ricefish chromosome/scaffold start (bp)
## 1677 Javanese ricefish chromosome/scaffold end (bp)
## 1678 Query protein or transcript ID
## 1679 Last common ancestor with Javanese ricefish
## 1680 Javanese ricefish homology type
## 1681 %id. target Javanese ricefish gene identical to query gene
## 1682 %id. query gene identical to target Javanese ricefish gene
## 1683 Javanese ricefish Gene-order conservation score
## 1684 Javanese ricefish Whole-genome alignment coverage
## 1685 Javanese ricefish orthology confidence [0 low, 1 high]
## 1686 Kakapo gene stable ID
## 1687 Kakapo gene name
## 1688 Kakapo protein or transcript stable ID
## 1689 Kakapo chromosome/scaffold name
## 1690 Kakapo chromosome/scaffold start (bp)
## 1691 Kakapo chromosome/scaffold end (bp)
## 1692 Query protein or transcript ID
## 1693 Last common ancestor with Kakapo
## 1694 Kakapo homology type
## 1695 %id. target Kakapo gene identical to query gene
## 1696 %id. query gene identical to target Kakapo gene
## 1697 Kakapo Gene-order conservation score
## 1698 Kakapo Whole-genome alignment coverage
## 1699 Kakapo orthology confidence [0 low, 1 high]
## 1700 Kangaroo rat gene stable ID
## 1701 Kangaroo rat gene name
## 1702 Kangaroo rat protein or transcript stable ID
## 1703 Kangaroo rat chromosome/scaffold name
## 1704 Kangaroo rat chromosome/scaffold start (bp)
## 1705 Kangaroo rat chromosome/scaffold end (bp)
## 1706 Query protein or transcript ID
## 1707 Last common ancestor with Kangaroo rat
## 1708 Kangaroo rat homology type
## 1709 %id. target Kangaroo rat gene identical to query gene
## 1710 %id. query gene identical to target Kangaroo rat gene
## 1711 Kangaroo rat Gene-order conservation score
## 1712 Kangaroo rat Whole-genome alignment coverage
## 1713 Kangaroo rat orthology confidence [0 low, 1 high]
## 1714 Koala gene stable ID
## 1715 Koala gene name
## 1716 Koala protein or transcript stable ID
## 1717 Koala chromosome/scaffold name
## 1718 Koala chromosome/scaffold start (bp)
## 1719 Koala chromosome/scaffold end (bp)
## 1720 Query protein or transcript ID
## 1721 Last common ancestor with Koala
## 1722 Koala homology type
## 1723 %id. target Koala gene identical to query gene
## 1724 %id. query gene identical to target Koala gene
## 1725 Koala Gene-order conservation score
## 1726 Koala Whole-genome alignment coverage
## 1727 Koala orthology confidence [0 low, 1 high]
## 1728 Lamprey gene stable ID
## 1729 Lamprey gene name
## 1730 Lamprey protein or transcript stable ID
## 1731 Lamprey chromosome/scaffold name
## 1732 Lamprey chromosome/scaffold start (bp)
## 1733 Lamprey chromosome/scaffold end (bp)
## 1734 Query protein or transcript ID
## 1735 Last common ancestor with Lamprey
## 1736 Lamprey homology type
## 1737 %id. target Lamprey gene identical to query gene
## 1738 %id. query gene identical to target Lamprey gene
## 1739 Lamprey Whole-genome alignment coverage
## 1740 Lamprey orthology confidence [0 low, 1 high]
## 1741 Large yellow croaker gene stable ID
## 1742 Large yellow croaker gene name
## 1743 Large yellow croaker protein or transcript stable ID
## 1744 Large yellow croaker chromosome/scaffold name
## 1745 Large yellow croaker chromosome/scaffold start (bp)
## 1746 Large yellow croaker chromosome/scaffold end (bp)
## 1747 Query protein or transcript ID
## 1748 Last common ancestor with Large yellow croaker
## 1749 Large yellow croaker homology type
## 1750 %id. target Large yellow croaker gene identical to query gene
## 1751 %id. query gene identical to target Large yellow croaker gene
## 1752 Large yellow croaker Gene-order conservation score
## 1753 Large yellow croaker Whole-genome alignment coverage
## 1754 Large yellow croaker orthology confidence [0 low, 1 high]
## 1755 Leishan spiny toad gene stable ID
## 1756 Leishan spiny toad gene name
## 1757 Leishan spiny toad protein or transcript stable ID
## 1758 Leishan spiny toad chromosome/scaffold name
## 1759 Leishan spiny toad chromosome/scaffold start (bp)
## 1760 Leishan spiny toad chromosome/scaffold end (bp)
## 1761 Query protein or transcript ID
## 1762 Last common ancestor with Leishan spiny toad
## 1763 Leishan spiny toad homology type
## 1764 %id. target Leishan spiny toad gene identical to query gene
## 1765 %id. query gene identical to target Leishan spiny toad gene
## 1766 Leishan spiny toad Gene-order conservation score
## 1767 Leishan spiny toad Whole-genome alignment coverage
## 1768 Leishan spiny toad orthology confidence [0 low, 1 high]
## 1769 Leopard gene stable ID
## 1770 Leopard gene name
## 1771 Leopard protein or transcript stable ID
## 1772 Leopard chromosome/scaffold name
## 1773 Leopard chromosome/scaffold start (bp)
## 1774 Leopard chromosome/scaffold end (bp)
## 1775 Query protein or transcript ID
## 1776 Last common ancestor with Leopard
## 1777 Leopard homology type
## 1778 %id. target Leopard gene identical to query gene
## 1779 %id. query gene identical to target Leopard gene
## 1780 Leopard Gene-order conservation score
## 1781 Leopard Whole-genome alignment coverage
## 1782 Leopard orthology confidence [0 low, 1 high]
## 1783 Lesser Egyptian jerboa gene stable ID
## 1784 Lesser Egyptian jerboa gene name
## 1785 Lesser Egyptian jerboa protein or transcript stable ID
## 1786 Lesser Egyptian jerboa chromosome/scaffold name
## 1787 Lesser Egyptian jerboa chromosome/scaffold start (bp)
## 1788 Lesser Egyptian jerboa chromosome/scaffold end (bp)
## 1789 Query protein or transcript ID
## 1790 Last common ancestor with Lesser Egyptian jerboa
## 1791 Lesser Egyptian jerboa homology type
## 1792 %id. target Lesser Egyptian jerboa gene identical to query gene
## 1793 %id. query gene identical to target Lesser Egyptian jerboa gene
## 1794 Lesser Egyptian jerboa Gene-order conservation score
## 1795 Lesser Egyptian jerboa Whole-genome alignment coverage
## 1796 Lesser Egyptian jerboa orthology confidence [0 low, 1 high]
## 1797 Lesser hedgehog tenrec gene stable ID
## 1798 Lesser hedgehog tenrec gene name
## 1799 Lesser hedgehog tenrec protein or transcript stable ID
## 1800 Lesser hedgehog tenrec chromosome/scaffold name
## 1801 Lesser hedgehog tenrec chromosome/scaffold start (bp)
## 1802 Lesser hedgehog tenrec chromosome/scaffold end (bp)
## 1803 Query protein or transcript ID
## 1804 Last common ancestor with Lesser hedgehog tenrec
## 1805 Lesser hedgehog tenrec homology type
## 1806 %id. target Lesser hedgehog tenrec gene identical to query gene
## 1807 %id. query gene identical to target Lesser hedgehog tenrec gene
## 1808 Lesser hedgehog tenrec Gene-order conservation score
## 1809 Lesser hedgehog tenrec Whole-genome alignment coverage
## 1810 Lesser hedgehog tenrec orthology confidence [0 low, 1 high]
## 1811 Lion gene stable ID
## 1812 Lion gene name
## 1813 Lion protein or transcript stable ID
## 1814 Lion chromosome/scaffold name
## 1815 Lion chromosome/scaffold start (bp)
## 1816 Lion chromosome/scaffold end (bp)
## 1817 Query protein or transcript ID
## 1818 Last common ancestor with Lion
## 1819 Lion homology type
## 1820 %id. target Lion gene identical to query gene
## 1821 %id. query gene identical to target Lion gene
## 1822 Lion Gene-order conservation score
## 1823 Lion Whole-genome alignment coverage
## 1824 Lion orthology confidence [0 low, 1 high]
## 1825 Long-tailed chinchilla gene stable ID
## 1826 Long-tailed chinchilla gene name
## 1827 Long-tailed chinchilla protein or transcript stable ID
## 1828 Long-tailed chinchilla chromosome/scaffold name
## 1829 Long-tailed chinchilla chromosome/scaffold start (bp)
## 1830 Long-tailed chinchilla chromosome/scaffold end (bp)
## 1831 Query protein or transcript ID
## 1832 Last common ancestor with Long-tailed chinchilla
## 1833 Long-tailed chinchilla homology type
## 1834 %id. target Long-tailed chinchilla gene identical to query gene
## 1835 %id. query gene identical to target Long-tailed chinchilla gene
## 1836 Long-tailed chinchilla Gene-order conservation score
## 1837 Long-tailed chinchilla Whole-genome alignment coverage
## 1838 Long-tailed chinchilla orthology confidence [0 low, 1 high]
## 1839 Lumpfish gene stable ID
## 1840 Lumpfish gene name
## 1841 Lumpfish protein or transcript stable ID
## 1842 Lumpfish chromosome/scaffold name
## 1843 Lumpfish chromosome/scaffold start (bp)
## 1844 Lumpfish chromosome/scaffold end (bp)
## 1845 Query protein or transcript ID
## 1846 Last common ancestor with Lumpfish
## 1847 Lumpfish homology type
## 1848 %id. target Lumpfish gene identical to query gene
## 1849 %id. query gene identical to target Lumpfish gene
## 1850 Lumpfish Gene-order conservation score
## 1851 Lumpfish Whole-genome alignment coverage
## 1852 Lumpfish orthology confidence [0 low, 1 high]
## 1853 Lyretail cichlid gene stable ID
## 1854 Lyretail cichlid gene name
## 1855 Lyretail cichlid protein or transcript stable ID
## 1856 Lyretail cichlid chromosome/scaffold name
## 1857 Lyretail cichlid chromosome/scaffold start (bp)
## 1858 Lyretail cichlid chromosome/scaffold end (bp)
## 1859 Query protein or transcript ID
## 1860 Last common ancestor with Lyretail cichlid
## 1861 Lyretail cichlid homology type
## 1862 %id. target Lyretail cichlid gene identical to query gene
## 1863 %id. query gene identical to target Lyretail cichlid gene
## 1864 Lyretail cichlid Gene-order conservation score
## 1865 Lyretail cichlid Whole-genome alignment coverage
## 1866 Lyretail cichlid orthology confidence [0 low, 1 high]
## 1867 Ma's night monkey gene stable ID
## 1868 Ma's night monkey gene name
## 1869 Ma's night monkey protein or transcript stable ID
## 1870 Ma's night monkey chromosome/scaffold name
## 1871 Ma's night monkey chromosome/scaffold start (bp)
## 1872 Ma's night monkey chromosome/scaffold end (bp)
## 1873 Query protein or transcript ID
## 1874 Last common ancestor with Ma's night monkey
## 1875 Ma's night monkey homology type
## 1876 %id. target Ma's night monkey gene identical to query gene
## 1877 %id. query gene identical to target Ma's night monkey gene
## 1878 Ma's night monkey Gene-order conservation score
## 1879 Ma's night monkey Whole-genome alignment coverage
## 1880 Ma's night monkey orthology confidence [0 low, 1 high]
## 1881 Macaque gene stable ID
## 1882 Macaque gene name
## 1883 Macaque protein or transcript stable ID
## 1884 Macaque chromosome/scaffold name
## 1885 Macaque chromosome/scaffold start (bp)
## 1886 Macaque chromosome/scaffold end (bp)
## 1887 Query protein or transcript ID
## 1888 Last common ancestor with Macaque
## 1889 Macaque homology type
## 1890 %id. target Macaque gene identical to query gene
## 1891 %id. query gene identical to target Macaque gene
## 1892 Macaque Gene-order conservation score
## 1893 Macaque Whole-genome alignment coverage
## 1894 Macaque orthology confidence [0 low, 1 high]
## 1895 Mainland tiger snake gene stable ID
## 1896 Mainland tiger snake gene name
## 1897 Mainland tiger snake protein or transcript stable ID
## 1898 Mainland tiger snake chromosome/scaffold name
## 1899 Mainland tiger snake chromosome/scaffold start (bp)
## 1900 Mainland tiger snake chromosome/scaffold end (bp)
## 1901 Query protein or transcript ID
## 1902 Last common ancestor with Mainland tiger snake
## 1903 Mainland tiger snake homology type
## 1904 %id. target Mainland tiger snake gene identical to query gene
## 1905 %id. query gene identical to target Mainland tiger snake gene
## 1906 Mainland tiger snake Gene-order conservation score
## 1907 Mainland tiger snake Whole-genome alignment coverage
## 1908 Mainland tiger snake orthology confidence [0 low, 1 high]
## 1909 Makobe Island cichlid gene stable ID
## 1910 Makobe Island cichlid gene name
## 1911 Makobe Island cichlid protein or transcript stable ID
## 1912 Makobe Island cichlid chromosome/scaffold name
## 1913 Makobe Island cichlid chromosome/scaffold start (bp)
## 1914 Makobe Island cichlid chromosome/scaffold end (bp)
## 1915 Query protein or transcript ID
## 1916 Last common ancestor with Makobe Island cichlid
## 1917 Makobe Island cichlid homology type
## 1918 %id. target Makobe Island cichlid gene identical to query gene
## 1919 %id. query gene identical to target Makobe Island cichlid gene
## 1920 Makobe Island cichlid Gene-order conservation score
## 1921 Makobe Island cichlid Whole-genome alignment coverage
## 1922 Makobe Island cichlid orthology confidence [0 low, 1 high]
## 1923 Mangrove rivulus gene stable ID
## 1924 Mangrove rivulus gene name
## 1925 Mangrove rivulus protein or transcript stable ID
## 1926 Mangrove rivulus chromosome/scaffold name
## 1927 Mangrove rivulus chromosome/scaffold start (bp)
## 1928 Mangrove rivulus chromosome/scaffold end (bp)
## 1929 Query protein or transcript ID
## 1930 Last common ancestor with Mangrove rivulus
## 1931 Mangrove rivulus homology type
## 1932 %id. target Mangrove rivulus gene identical to query gene
## 1933 %id. query gene identical to target Mangrove rivulus gene
## 1934 Mangrove rivulus Gene-order conservation score
## 1935 Mangrove rivulus Whole-genome alignment coverage
## 1936 Mangrove rivulus orthology confidence [0 low, 1 high]
## 1937 Medium ground-finch gene stable ID
## 1938 Medium ground-finch gene name
## 1939 Medium ground-finch protein or transcript stable ID
## 1940 Medium ground-finch chromosome/scaffold name
## 1941 Medium ground-finch chromosome/scaffold start (bp)
## 1942 Medium ground-finch chromosome/scaffold end (bp)
## 1943 Query protein or transcript ID
## 1944 Last common ancestor with Medium ground-finch
## 1945 Medium ground-finch homology type
## 1946 %id. target Medium ground-finch gene identical to query gene
## 1947 %id. query gene identical to target Medium ground-finch gene
## 1948 Medium ground-finch Gene-order conservation score
## 1949 Medium ground-finch Whole-genome alignment coverage
## 1950 Medium ground-finch orthology confidence [0 low, 1 high]
## 1951 Megabat gene stable ID
## 1952 Megabat gene name
## 1953 Megabat protein or transcript stable ID
## 1954 Megabat chromosome/scaffold name
## 1955 Megabat chromosome/scaffold start (bp)
## 1956 Megabat chromosome/scaffold end (bp)
## 1957 Query protein or transcript ID
## 1958 Last common ancestor with Megabat
## 1959 Megabat homology type
## 1960 %id. target Megabat gene identical to query gene
## 1961 %id. query gene identical to target Megabat gene
## 1962 Megabat Gene-order conservation score
## 1963 Megabat Whole-genome alignment coverage
## 1964 Megabat orthology confidence [0 low, 1 high]
## 1965 Mexican tetra gene stable ID
## 1966 Mexican tetra gene name
## 1967 Mexican tetra protein or transcript stable ID
## 1968 Mexican tetra chromosome/scaffold name
## 1969 Mexican tetra chromosome/scaffold start (bp)
## 1970 Mexican tetra chromosome/scaffold end (bp)
## 1971 Query protein or transcript ID
## 1972 Last common ancestor with Mexican tetra
## 1973 Mexican tetra homology type
## 1974 %id. target Mexican tetra gene identical to query gene
## 1975 %id. query gene identical to target Mexican tetra gene
## 1976 Mexican tetra Gene-order conservation score
## 1977 Mexican tetra Whole-genome alignment coverage
## 1978 Mexican tetra orthology confidence [0 low, 1 high]
## 1979 Microbat gene stable ID
## 1980 Microbat gene name
## 1981 Microbat protein or transcript stable ID
## 1982 Microbat chromosome/scaffold name
## 1983 Microbat chromosome/scaffold start (bp)
## 1984 Microbat chromosome/scaffold end (bp)
## 1985 Query protein or transcript ID
## 1986 Last common ancestor with Microbat
## 1987 Microbat homology type
## 1988 %id. target Microbat gene identical to query gene
## 1989 %id. query gene identical to target Microbat gene
## 1990 Microbat Gene-order conservation score
## 1991 Microbat Whole-genome alignment coverage
## 1992 Microbat orthology confidence [0 low, 1 high]
## 1993 Midas cichlid gene stable ID
## 1994 Midas cichlid gene name
## 1995 Midas cichlid protein or transcript stable ID
## 1996 Midas cichlid chromosome/scaffold name
## 1997 Midas cichlid chromosome/scaffold start (bp)
## 1998 Midas cichlid chromosome/scaffold end (bp)
## 1999 Query protein or transcript ID
## 2000 Last common ancestor with Midas cichlid
## 2001 Midas cichlid homology type
## 2002 %id. target Midas cichlid gene identical to query gene
## 2003 %id. query gene identical to target Midas cichlid gene
## 2004 Midas cichlid Gene-order conservation score
## 2005 Midas cichlid Whole-genome alignment coverage
## 2006 Midas cichlid orthology confidence [0 low, 1 high]
## 2007 Mouse gene stable ID
## 2008 Mouse gene name
## 2009 Mouse protein or transcript stable ID
## 2010 Mouse chromosome/scaffold name
## 2011 Mouse chromosome/scaffold start (bp)
## 2012 Mouse chromosome/scaffold end (bp)
## 2013 Query protein or transcript ID
## 2014 Last common ancestor with Mouse
## 2015 Mouse homology type
## 2016 %id. target Mouse gene identical to query gene
## 2017 %id. query gene identical to target Mouse gene
## 2018 Mouse Gene-order conservation score
## 2019 Mouse Whole-genome alignment coverage
## 2020 Mouse orthology confidence [0 low, 1 high]
## 2021 Mouse Lemur gene stable ID
## 2022 Mouse Lemur gene name
## 2023 Mouse Lemur protein or transcript stable ID
## 2024 Mouse Lemur chromosome/scaffold name
## 2025 Mouse Lemur chromosome/scaffold start (bp)
## 2026 Mouse Lemur chromosome/scaffold end (bp)
## 2027 Query protein or transcript ID
## 2028 Last common ancestor with Mouse Lemur
## 2029 Mouse Lemur homology type
## 2030 %id. target Mouse Lemur gene identical to query gene
## 2031 %id. query gene identical to target Mouse Lemur gene
## 2032 Mouse Lemur Gene-order conservation score
## 2033 Mouse Lemur Whole-genome alignment coverage
## 2034 Mouse Lemur orthology confidence [0 low, 1 high]
## 2035 Mummichog gene stable ID
## 2036 Mummichog gene name
## 2037 Mummichog protein or transcript stable ID
## 2038 Mummichog chromosome/scaffold name
## 2039 Mummichog chromosome/scaffold start (bp)
## 2040 Mummichog chromosome/scaffold end (bp)
## 2041 Query protein or transcript ID
## 2042 Last common ancestor with Mummichog
## 2043 Mummichog homology type
## 2044 %id. target Mummichog gene identical to query gene
## 2045 %id. query gene identical to target Mummichog gene
## 2046 Mummichog Gene-order conservation score
## 2047 Mummichog Whole-genome alignment coverage
## 2048 Mummichog orthology confidence [0 low, 1 high]
## 2049 Naked mole-rat female gene stable ID
## 2050 Naked mole-rat female gene name
## 2051 Naked mole-rat female protein or transcript stable ID
## 2052 Naked mole-rat female chromosome/scaffold name
## 2053 Naked mole-rat female chromosome/scaffold start (bp)
## 2054 Naked mole-rat female chromosome/scaffold end (bp)
## 2055 Query protein or transcript ID
## 2056 Last common ancestor with Naked mole-rat female
## 2057 Naked mole-rat female homology type
## 2058 %id. target Naked mole-rat female gene identical to query gene
## 2059 %id. query gene identical to target Naked mole-rat female gene
## 2060 Naked mole-rat female Gene-order conservation score
## 2061 Naked mole-rat female Whole-genome alignment coverage
## 2062 Naked mole-rat female orthology confidence [0 low, 1 high]
## 2063 Narwhal gene stable ID
## 2064 Narwhal gene name
## 2065 Narwhal protein or transcript stable ID
## 2066 Narwhal chromosome/scaffold name
## 2067 Narwhal chromosome/scaffold start (bp)
## 2068 Narwhal chromosome/scaffold end (bp)
## 2069 Query protein or transcript ID
## 2070 Last common ancestor with Narwhal
## 2071 Narwhal homology type
## 2072 %id. target Narwhal gene identical to query gene
## 2073 %id. query gene identical to target Narwhal gene
## 2074 Narwhal Gene-order conservation score
## 2075 Narwhal Whole-genome alignment coverage
## 2076 Narwhal orthology confidence [0 low, 1 high]
## 2077 Nile tilapia gene stable ID
## 2078 Nile tilapia gene name
## 2079 Nile tilapia protein or transcript stable ID
## 2080 Nile tilapia chromosome/scaffold name
## 2081 Nile tilapia chromosome/scaffold start (bp)
## 2082 Nile tilapia chromosome/scaffold end (bp)
## 2083 Query protein or transcript ID
## 2084 Last common ancestor with Nile tilapia
## 2085 Nile tilapia homology type
## 2086 %id. target Nile tilapia gene identical to query gene
## 2087 %id. query gene identical to target Nile tilapia gene
## 2088 Nile tilapia Gene-order conservation score
## 2089 Nile tilapia Whole-genome alignment coverage
## 2090 Nile tilapia orthology confidence [0 low, 1 high]
## 2091 Northern American deer mouse gene stable ID
## 2092 Northern American deer mouse gene name
## 2093 Northern American deer mouse protein or transcript stable ID
## 2094 Northern American deer mouse chromosome/scaffold name
## 2095 Northern American deer mouse chromosome/scaffold start (bp)
## 2096 Northern American deer mouse chromosome/scaffold end (bp)
## 2097 Query protein or transcript ID
## 2098 Last common ancestor with Northern American deer mouse
## 2099 Northern American deer mouse homology type
## 2100 %id. target Northern American deer mouse gene identical to query gene
## 2101 %id. query gene identical to target Northern American deer mouse gene
## 2102 Northern American deer mouse Gene-order conservation score
## 2103 Northern American deer mouse Whole-genome alignment coverage
## 2104 Northern American deer mouse orthology confidence [0 low, 1 high]
## 2105 Northern pike gene stable ID
## 2106 Northern pike gene name
## 2107 Northern pike protein or transcript stable ID
## 2108 Northern pike chromosome/scaffold name
## 2109 Northern pike chromosome/scaffold start (bp)
## 2110 Northern pike chromosome/scaffold end (bp)
## 2111 Query protein or transcript ID
## 2112 Last common ancestor with Northern pike
## 2113 Northern pike homology type
## 2114 %id. target Northern pike gene identical to query gene
## 2115 %id. query gene identical to target Northern pike gene
## 2116 Northern pike Gene-order conservation score
## 2117 Northern pike Whole-genome alignment coverage
## 2118 Northern pike orthology confidence [0 low, 1 high]
## 2119 Olive baboon gene stable ID
## 2120 Olive baboon gene name
## 2121 Olive baboon protein or transcript stable ID
## 2122 Olive baboon chromosome/scaffold name
## 2123 Olive baboon chromosome/scaffold start (bp)
## 2124 Olive baboon chromosome/scaffold end (bp)
## 2125 Query protein or transcript ID
## 2126 Last common ancestor with Olive baboon
## 2127 Olive baboon homology type
## 2128 %id. target Olive baboon gene identical to query gene
## 2129 %id. query gene identical to target Olive baboon gene
## 2130 Olive baboon Gene-order conservation score
## 2131 Olive baboon Whole-genome alignment coverage
## 2132 Olive baboon orthology confidence [0 low, 1 high]
## 2133 Opossum gene stable ID
## 2134 Opossum gene name
## 2135 Opossum protein or transcript stable ID
## 2136 Opossum chromosome/scaffold name
## 2137 Opossum chromosome/scaffold start (bp)
## 2138 Opossum chromosome/scaffold end (bp)
## 2139 Query protein or transcript ID
## 2140 Last common ancestor with Opossum
## 2141 Opossum homology type
## 2142 %id. target Opossum gene identical to query gene
## 2143 %id. query gene identical to target Opossum gene
## 2144 Opossum Gene-order conservation score
## 2145 Opossum Whole-genome alignment coverage
## 2146 Opossum orthology confidence [0 low, 1 high]
## 2147 Orange clownfish gene stable ID
## 2148 Orange clownfish gene name
## 2149 Orange clownfish protein or transcript stable ID
## 2150 Orange clownfish chromosome/scaffold name
## 2151 Orange clownfish chromosome/scaffold start (bp)
## 2152 Orange clownfish chromosome/scaffold end (bp)
## 2153 Query protein or transcript ID
## 2154 Last common ancestor with Orange clownfish
## 2155 Orange clownfish homology type
## 2156 %id. target Orange clownfish gene identical to query gene
## 2157 %id. query gene identical to target Orange clownfish gene
## 2158 Orange clownfish Gene-order conservation score
## 2159 Orange clownfish Whole-genome alignment coverage
## 2160 Orange clownfish orthology confidence [0 low, 1 high]
## 2161 Painted turtle gene stable ID
## 2162 Painted turtle gene name
## 2163 Painted turtle protein or transcript stable ID
## 2164 Painted turtle chromosome/scaffold name
## 2165 Painted turtle chromosome/scaffold start (bp)
## 2166 Painted turtle chromosome/scaffold end (bp)
## 2167 Query protein or transcript ID
## 2168 Last common ancestor with Painted turtle
## 2169 Painted turtle homology type
## 2170 %id. target Painted turtle gene identical to query gene
## 2171 %id. query gene identical to target Painted turtle gene
## 2172 Painted turtle Gene-order conservation score
## 2173 Painted turtle Whole-genome alignment coverage
## 2174 Painted turtle orthology confidence [0 low, 1 high]
## 2175 Paramormyrops kingsleyae gene stable ID
## 2176 Paramormyrops kingsleyae gene name
## 2177 Paramormyrops kingsleyae protein or transcript stable ID
## 2178 Paramormyrops kingsleyae chromosome/scaffold name
## 2179 Paramormyrops kingsleyae chromosome/scaffold start (bp)
## 2180 Paramormyrops kingsleyae chromosome/scaffold end (bp)
## 2181 Query protein or transcript ID
## 2182 Last common ancestor with Paramormyrops kingsleyae
## 2183 Paramormyrops kingsleyae homology type
## 2184 %id. target Paramormyrops kingsleyae gene identical to query gene
## 2185 %id. query gene identical to target Paramormyrops kingsleyae gene
## 2186 Paramormyrops kingsleyae Gene-order conservation score
## 2187 Paramormyrops kingsleyae Whole-genome alignment coverage
## 2188 Paramormyrops kingsleyae orthology confidence [0 low, 1 high]
## 2189 Pig gene stable ID
## 2190 Pig gene name
## 2191 Pig protein or transcript stable ID
## 2192 Pig chromosome/scaffold name
## 2193 Pig chromosome/scaffold start (bp)
## 2194 Pig chromosome/scaffold end (bp)
## 2195 Query protein or transcript ID
## 2196 Last common ancestor with Pig
## 2197 Pig homology type
## 2198 %id. target Pig gene identical to query gene
## 2199 %id. query gene identical to target Pig gene
## 2200 Pig Gene-order conservation score
## 2201 Pig Whole-genome alignment coverage
## 2202 Pig orthology confidence [0 low, 1 high]
## 2203 Pig-tailed macaque gene stable ID
## 2204 Pig-tailed macaque gene name
## 2205 Pig-tailed macaque protein or transcript stable ID
## 2206 Pig-tailed macaque chromosome/scaffold name
## 2207 Pig-tailed macaque chromosome/scaffold start (bp)
## 2208 Pig-tailed macaque chromosome/scaffold end (bp)
## 2209 Query protein or transcript ID
## 2210 Last common ancestor with Pig-tailed macaque
## 2211 Pig-tailed macaque homology type
## 2212 %id. target Pig-tailed macaque gene identical to query gene
## 2213 %id. query gene identical to target Pig-tailed macaque gene
## 2214 Pig-tailed macaque Gene-order conservation score
## 2215 Pig-tailed macaque Whole-genome alignment coverage
## 2216 Pig-tailed macaque orthology confidence [0 low, 1 high]
## 2217 Pika gene stable ID
## 2218 Pika gene name
## 2219 Pika protein or transcript stable ID
## 2220 Pika chromosome/scaffold name
## 2221 Pika chromosome/scaffold start (bp)
## 2222 Pika chromosome/scaffold end (bp)
## 2223 Query protein or transcript ID
## 2224 Last common ancestor with Pika
## 2225 Pika homology type
## 2226 %id. target Pika gene identical to query gene
## 2227 %id. query gene identical to target Pika gene
## 2228 Pika Gene-order conservation score
## 2229 Pika Whole-genome alignment coverage
## 2230 Pika orthology confidence [0 low, 1 high]
## 2231 Pike-perch gene stable ID
## 2232 Pike-perch gene name
## 2233 Pike-perch protein or transcript stable ID
## 2234 Pike-perch chromosome/scaffold name
## 2235 Pike-perch chromosome/scaffold start (bp)
## 2236 Pike-perch chromosome/scaffold end (bp)
## 2237 Query protein or transcript ID
## 2238 Last common ancestor with Pike-perch
## 2239 Pike-perch homology type
## 2240 %id. target Pike-perch gene identical to query gene
## 2241 %id. query gene identical to target Pike-perch gene
## 2242 Pike-perch Gene-order conservation score
## 2243 Pike-perch Whole-genome alignment coverage
## 2244 Pike-perch orthology confidence [0 low, 1 high]
## 2245 Pinecone soldierfish gene stable ID
## 2246 Pinecone soldierfish gene name
## 2247 Pinecone soldierfish protein or transcript stable ID
## 2248 Pinecone soldierfish chromosome/scaffold name
## 2249 Pinecone soldierfish chromosome/scaffold start (bp)
## 2250 Pinecone soldierfish chromosome/scaffold end (bp)
## 2251 Query protein or transcript ID
## 2252 Last common ancestor with Pinecone soldierfish
## 2253 Pinecone soldierfish homology type
## 2254 %id. target Pinecone soldierfish gene identical to query gene
## 2255 %id. query gene identical to target Pinecone soldierfish gene
## 2256 Pinecone soldierfish Gene-order conservation score
## 2257 Pinecone soldierfish Whole-genome alignment coverage
## 2258 Pinecone soldierfish orthology confidence [0 low, 1 high]
## 2259 Pink-footed goose gene stable ID
## 2260 Pink-footed goose gene name
## 2261 Pink-footed goose protein or transcript stable ID
## 2262 Pink-footed goose chromosome/scaffold name
## 2263 Pink-footed goose chromosome/scaffold start (bp)
## 2264 Pink-footed goose chromosome/scaffold end (bp)
## 2265 Query protein or transcript ID
## 2266 Last common ancestor with Pink-footed goose
## 2267 Pink-footed goose homology type
## 2268 %id. target Pink-footed goose gene identical to query gene
## 2269 %id. query gene identical to target Pink-footed goose gene
## 2270 Pink-footed goose Gene-order conservation score
## 2271 Pink-footed goose Whole-genome alignment coverage
## 2272 Pink-footed goose orthology confidence [0 low, 1 high]
## 2273 Platyfish gene stable ID
## 2274 Platyfish gene name
## 2275 Platyfish protein or transcript stable ID
## 2276 Platyfish chromosome/scaffold name
## 2277 Platyfish chromosome/scaffold start (bp)
## 2278 Platyfish chromosome/scaffold end (bp)
## 2279 Query protein or transcript ID
## 2280 Last common ancestor with Platyfish
## 2281 Platyfish homology type
## 2282 %id. target Platyfish gene identical to query gene
## 2283 %id. query gene identical to target Platyfish gene
## 2284 Platyfish Gene-order conservation score
## 2285 Platyfish Whole-genome alignment coverage
## 2286 Platyfish orthology confidence [0 low, 1 high]
## 2287 Platypus gene stable ID
## 2288 Platypus gene name
## 2289 Platypus protein or transcript stable ID
## 2290 Platypus chromosome/scaffold name
## 2291 Platypus chromosome/scaffold start (bp)
## 2292 Platypus chromosome/scaffold end (bp)
## 2293 Query protein or transcript ID
## 2294 Last common ancestor with Platypus
## 2295 Platypus homology type
## 2296 %id. target Platypus gene identical to query gene
## 2297 %id. query gene identical to target Platypus gene
## 2298 Platypus Gene-order conservation score
## 2299 Platypus Whole-genome alignment coverage
## 2300 Platypus orthology confidence [0 low, 1 high]
## 2301 Polar bear gene stable ID
## 2302 Polar bear gene name
## 2303 Polar bear protein or transcript stable ID
## 2304 Polar bear chromosome/scaffold name
## 2305 Polar bear chromosome/scaffold start (bp)
## 2306 Polar bear chromosome/scaffold end (bp)
## 2307 Query protein or transcript ID
## 2308 Last common ancestor with Polar bear
## 2309 Polar bear homology type
## 2310 %id. target Polar bear gene identical to query gene
## 2311 %id. query gene identical to target Polar bear gene
## 2312 Polar bear Gene-order conservation score
## 2313 Polar bear Whole-genome alignment coverage
## 2314 Polar bear orthology confidence [0 low, 1 high]
## 2315 Prairie vole gene stable ID
## 2316 Prairie vole gene name
## 2317 Prairie vole protein or transcript stable ID
## 2318 Prairie vole chromosome/scaffold name
## 2319 Prairie vole chromosome/scaffold start (bp)
## 2320 Prairie vole chromosome/scaffold end (bp)
## 2321 Query protein or transcript ID
## 2322 Last common ancestor with Prairie vole
## 2323 Prairie vole homology type
## 2324 %id. target Prairie vole gene identical to query gene
## 2325 %id. query gene identical to target Prairie vole gene
## 2326 Prairie vole Gene-order conservation score
## 2327 Prairie vole Whole-genome alignment coverage
## 2328 Prairie vole orthology confidence [0 low, 1 high]
## 2329 Rabbit gene stable ID
## 2330 Rabbit gene name
## 2331 Rabbit protein or transcript stable ID
## 2332 Rabbit chromosome/scaffold name
## 2333 Rabbit chromosome/scaffold start (bp)
## 2334 Rabbit chromosome/scaffold end (bp)
## 2335 Query protein or transcript ID
## 2336 Last common ancestor with Rabbit
## 2337 Rabbit homology type
## 2338 %id. target Rabbit gene identical to query gene
## 2339 %id. query gene identical to target Rabbit gene
## 2340 Rabbit Gene-order conservation score
## 2341 Rabbit Whole-genome alignment coverage
## 2342 Rabbit orthology confidence [0 low, 1 high]
## 2343 Rainbow trout gene stable ID
## 2344 Rainbow trout gene name
## 2345 Rainbow trout protein or transcript stable ID
## 2346 Rainbow trout chromosome/scaffold name
## 2347 Rainbow trout chromosome/scaffold start (bp)
## 2348 Rainbow trout chromosome/scaffold end (bp)
## 2349 Query protein or transcript ID
## 2350 Last common ancestor with Rainbow trout
## 2351 Rainbow trout homology type
## 2352 %id. target Rainbow trout gene identical to query gene
## 2353 %id. query gene identical to target Rainbow trout gene
## 2354 Rainbow trout Gene-order conservation score
## 2355 Rainbow trout orthology confidence [0 low, 1 high]
## 2356 Rat gene stable ID
## 2357 Rat gene name
## 2358 Rat protein or transcript stable ID
## 2359 Rat chromosome/scaffold name
## 2360 Rat chromosome/scaffold start (bp)
## 2361 Rat chromosome/scaffold end (bp)
## 2362 Query protein or transcript ID
## 2363 Last common ancestor with Rat
## 2364 Rat homology type
## 2365 %id. target Rat gene identical to query gene
## 2366 %id. query gene identical to target Rat gene
## 2367 Rat Gene-order conservation score
## 2368 Rat Whole-genome alignment coverage
## 2369 Rat orthology confidence [0 low, 1 high]
## 2370 Red fox gene stable ID
## 2371 Red fox gene name
## 2372 Red fox protein or transcript stable ID
## 2373 Red fox chromosome/scaffold name
## 2374 Red fox chromosome/scaffold start (bp)
## 2375 Red fox chromosome/scaffold end (bp)
## 2376 Query protein or transcript ID
## 2377 Last common ancestor with Red fox
## 2378 Red fox homology type
## 2379 %id. target Red fox gene identical to query gene
## 2380 %id. query gene identical to target Red fox gene
## 2381 Red fox Gene-order conservation score
## 2382 Red fox Whole-genome alignment coverage
## 2383 Red fox orthology confidence [0 low, 1 high]
## 2384 Red-bellied piranha gene stable ID
## 2385 Red-bellied piranha gene name
## 2386 Red-bellied piranha protein or transcript stable ID
## 2387 Red-bellied piranha chromosome/scaffold name
## 2388 Red-bellied piranha chromosome/scaffold start (bp)
## 2389 Red-bellied piranha chromosome/scaffold end (bp)
## 2390 Query protein or transcript ID
## 2391 Last common ancestor with Red-bellied piranha
## 2392 Red-bellied piranha homology type
## 2393 %id. target Red-bellied piranha gene identical to query gene
## 2394 %id. query gene identical to target Red-bellied piranha gene
## 2395 Red-bellied piranha Gene-order conservation score
## 2396 Red-bellied piranha Whole-genome alignment coverage
## 2397 Red-bellied piranha orthology confidence [0 low, 1 high]
## 2398 Reedfish gene stable ID
## 2399 Reedfish gene name
## 2400 Reedfish protein or transcript stable ID
## 2401 Reedfish chromosome/scaffold name
## 2402 Reedfish chromosome/scaffold start (bp)
## 2403 Reedfish chromosome/scaffold end (bp)
## 2404 Query protein or transcript ID
## 2405 Last common ancestor with Reedfish
## 2406 Reedfish homology type
## 2407 %id. target Reedfish gene identical to query gene
## 2408 %id. query gene identical to target Reedfish gene
## 2409 Reedfish Gene-order conservation score
## 2410 Reedfish Whole-genome alignment coverage
## 2411 Reedfish orthology confidence [0 low, 1 high]
## 2412 Ryukyu mouse gene stable ID
## 2413 Ryukyu mouse gene name
## 2414 Ryukyu mouse protein or transcript stable ID
## 2415 Ryukyu mouse chromosome/scaffold name
## 2416 Ryukyu mouse chromosome/scaffold start (bp)
## 2417 Ryukyu mouse chromosome/scaffold end (bp)
## 2418 Query protein or transcript ID
## 2419 Last common ancestor with Ryukyu mouse
## 2420 Ryukyu mouse homology type
## 2421 %id. target Ryukyu mouse gene identical to query gene
## 2422 %id. query gene identical to target Ryukyu mouse gene
## 2423 Ryukyu mouse Gene-order conservation score
## 2424 Ryukyu mouse Whole-genome alignment coverage
## 2425 Ryukyu mouse orthology confidence [0 low, 1 high]
## 2426 Saccharomyces cerevisiae gene stable ID
## 2427 Saccharomyces cerevisiae gene name
## 2428 Saccharomyces cerevisiae protein or transcript stable ID
## 2429 Saccharomyces cerevisiae chromosome/scaffold name
## 2430 Saccharomyces cerevisiae chromosome/scaffold start (bp)
## 2431 Saccharomyces cerevisiae chromosome/scaffold end (bp)
## 2432 Query protein or transcript ID
## 2433 Last common ancestor with Saccharomyces cerevisiae
## 2434 Saccharomyces cerevisiae homology type
## 2435 %id. target Saccharomyces cerevisiae gene identical to query gene
## 2436 %id. query gene identical to target Saccharomyces cerevisiae gene
## 2437 Saccharomyces cerevisiae orthology confidence [0 low, 1 high]
## 2438 Sailfin molly gene stable ID
## 2439 Sailfin molly gene name
## 2440 Sailfin molly protein or transcript stable ID
## 2441 Sailfin molly chromosome/scaffold name
## 2442 Sailfin molly chromosome/scaffold start (bp)
## 2443 Sailfin molly chromosome/scaffold end (bp)
## 2444 Query protein or transcript ID
## 2445 Last common ancestor with Sailfin molly
## 2446 Sailfin molly homology type
## 2447 %id. target Sailfin molly gene identical to query gene
## 2448 %id. query gene identical to target Sailfin molly gene
## 2449 Sailfin molly Gene-order conservation score
## 2450 Sailfin molly Whole-genome alignment coverage
## 2451 Sailfin molly orthology confidence [0 low, 1 high]
## 2452 Sheep gene stable ID
## 2453 Sheep gene name
## 2454 Sheep protein or transcript stable ID
## 2455 Sheep chromosome/scaffold name
## 2456 Sheep chromosome/scaffold start (bp)
## 2457 Sheep chromosome/scaffold end (bp)
## 2458 Query protein or transcript ID
## 2459 Last common ancestor with Sheep
## 2460 Sheep homology type
## 2461 %id. target Sheep gene identical to query gene
## 2462 %id. query gene identical to target Sheep gene
## 2463 Sheep Gene-order conservation score
## 2464 Sheep Whole-genome alignment coverage
## 2465 Sheep orthology confidence [0 low, 1 high]
## 2466 Sheepshead minnow gene stable ID
## 2467 Sheepshead minnow gene name
## 2468 Sheepshead minnow protein or transcript stable ID
## 2469 Sheepshead minnow chromosome/scaffold name
## 2470 Sheepshead minnow chromosome/scaffold start (bp)
## 2471 Sheepshead minnow chromosome/scaffold end (bp)
## 2472 Query protein or transcript ID
## 2473 Last common ancestor with Sheepshead minnow
## 2474 Sheepshead minnow homology type
## 2475 %id. target Sheepshead minnow gene identical to query gene
## 2476 %id. query gene identical to target Sheepshead minnow gene
## 2477 Sheepshead minnow Gene-order conservation score
## 2478 Sheepshead minnow Whole-genome alignment coverage
## 2479 Sheepshead minnow orthology confidence [0 low, 1 high]
## 2480 Shrew gene stable ID
## 2481 Shrew gene name
## 2482 Shrew protein or transcript stable ID
## 2483 Shrew chromosome/scaffold name
## 2484 Shrew chromosome/scaffold start (bp)
## 2485 Shrew chromosome/scaffold end (bp)
## 2486 Query protein or transcript ID
## 2487 Last common ancestor with Shrew
## 2488 Shrew homology type
## 2489 %id. target Shrew gene identical to query gene
## 2490 %id. query gene identical to target Shrew gene
## 2491 Shrew Gene-order conservation score
## 2492 Shrew Whole-genome alignment coverage
## 2493 Shrew orthology confidence [0 low, 1 high]
## 2494 Shrew mouse gene stable ID
## 2495 Shrew mouse gene name
## 2496 Shrew mouse protein or transcript stable ID
## 2497 Shrew mouse chromosome/scaffold name
## 2498 Shrew mouse chromosome/scaffold start (bp)
## 2499 Shrew mouse chromosome/scaffold end (bp)
## 2500 Query protein or transcript ID
## 2501 Last common ancestor with Shrew mouse
## 2502 Shrew mouse homology type
## 2503 %id. target Shrew mouse gene identical to query gene
## 2504 %id. query gene identical to target Shrew mouse gene
## 2505 Shrew mouse Gene-order conservation score
## 2506 Shrew mouse Whole-genome alignment coverage
## 2507 Shrew mouse orthology confidence [0 low, 1 high]
## 2508 Siamese fighting fish gene stable ID
## 2509 Siamese fighting fish gene name
## 2510 Siamese fighting fish protein or transcript stable ID
## 2511 Siamese fighting fish chromosome/scaffold name
## 2512 Siamese fighting fish chromosome/scaffold start (bp)
## 2513 Siamese fighting fish chromosome/scaffold end (bp)
## 2514 Query protein or transcript ID
## 2515 Last common ancestor with Siamese fighting fish
## 2516 Siamese fighting fish homology type
## 2517 %id. target Siamese fighting fish gene identical to query gene
## 2518 %id. query gene identical to target Siamese fighting fish gene
## 2519 Siamese fighting fish Gene-order conservation score
## 2520 Siamese fighting fish Whole-genome alignment coverage
## 2521 Siamese fighting fish orthology confidence [0 low, 1 high]
## 2522 Siberian musk deer gene stable ID
## 2523 Siberian musk deer gene name
## 2524 Siberian musk deer protein or transcript stable ID
## 2525 Siberian musk deer chromosome/scaffold name
## 2526 Siberian musk deer chromosome/scaffold start (bp)
## 2527 Siberian musk deer chromosome/scaffold end (bp)
## 2528 Query protein or transcript ID
## 2529 Last common ancestor with Siberian musk deer
## 2530 Siberian musk deer homology type
## 2531 %id. target Siberian musk deer gene identical to query gene
## 2532 %id. query gene identical to target Siberian musk deer gene
## 2533 Siberian musk deer Gene-order conservation score
## 2534 Siberian musk deer Whole-genome alignment coverage
## 2535 Siberian musk deer orthology confidence [0 low, 1 high]
## 2536 Sloth gene stable ID
## 2537 Sloth gene name
## 2538 Sloth protein or transcript stable ID
## 2539 Sloth chromosome/scaffold name
## 2540 Sloth chromosome/scaffold start (bp)
## 2541 Sloth chromosome/scaffold end (bp)
## 2542 Query protein or transcript ID
## 2543 Last common ancestor with Sloth
## 2544 Sloth homology type
## 2545 %id. target Sloth gene identical to query gene
## 2546 %id. query gene identical to target Sloth gene
## 2547 Sloth Gene-order conservation score
## 2548 Sloth Whole-genome alignment coverage
## 2549 Sloth orthology confidence [0 low, 1 high]
## 2550 Sooty mangabey gene stable ID
## 2551 Sooty mangabey gene name
## 2552 Sooty mangabey protein or transcript stable ID
## 2553 Sooty mangabey chromosome/scaffold name
## 2554 Sooty mangabey chromosome/scaffold start (bp)
## 2555 Sooty mangabey chromosome/scaffold end (bp)
## 2556 Query protein or transcript ID
## 2557 Last common ancestor with Sooty mangabey
## 2558 Sooty mangabey homology type
## 2559 %id. target Sooty mangabey gene identical to query gene
## 2560 %id. query gene identical to target Sooty mangabey gene
## 2561 Sooty mangabey Gene-order conservation score
## 2562 Sooty mangabey Whole-genome alignment coverage
## 2563 Sooty mangabey orthology confidence [0 low, 1 high]
## 2564 Sperm whale gene stable ID
## 2565 Sperm whale gene name
## 2566 Sperm whale protein or transcript stable ID
## 2567 Sperm whale chromosome/scaffold name
## 2568 Sperm whale chromosome/scaffold start (bp)
## 2569 Sperm whale chromosome/scaffold end (bp)
## 2570 Query protein or transcript ID
## 2571 Last common ancestor with Sperm whale
## 2572 Sperm whale homology type
## 2573 %id. target Sperm whale gene identical to query gene
## 2574 %id. query gene identical to target Sperm whale gene
## 2575 Sperm whale Gene-order conservation score
## 2576 Sperm whale Whole-genome alignment coverage
## 2577 Sperm whale orthology confidence [0 low, 1 high]
## 2578 Spiny chromis gene stable ID
## 2579 Spiny chromis gene name
## 2580 Spiny chromis protein or transcript stable ID
## 2581 Spiny chromis chromosome/scaffold name
## 2582 Spiny chromis chromosome/scaffold start (bp)
## 2583 Spiny chromis chromosome/scaffold end (bp)
## 2584 Query protein or transcript ID
## 2585 Last common ancestor with Spiny chromis
## 2586 Spiny chromis homology type
## 2587 %id. target Spiny chromis gene identical to query gene
## 2588 %id. query gene identical to target Spiny chromis gene
## 2589 Spiny chromis Gene-order conservation score
## 2590 Spiny chromis Whole-genome alignment coverage
## 2591 Spiny chromis orthology confidence [0 low, 1 high]
## 2592 Spotted gar gene stable ID
## 2593 Spotted gar gene name
## 2594 Spotted gar protein or transcript stable ID
## 2595 Spotted gar chromosome/scaffold name
## 2596 Spotted gar chromosome/scaffold start (bp)
## 2597 Spotted gar chromosome/scaffold end (bp)
## 2598 Query protein or transcript ID
## 2599 Last common ancestor with Spotted gar
## 2600 Spotted gar homology type
## 2601 %id. target Spotted gar gene identical to query gene
## 2602 %id. query gene identical to target Spotted gar gene
## 2603 Spotted gar Gene-order conservation score
## 2604 Spotted gar Whole-genome alignment coverage
## 2605 Spotted gar orthology confidence [0 low, 1 high]
## 2606 Squirrel gene stable ID
## 2607 Squirrel gene name
## 2608 Squirrel protein or transcript stable ID
## 2609 Squirrel chromosome/scaffold name
## 2610 Squirrel chromosome/scaffold start (bp)
## 2611 Squirrel chromosome/scaffold end (bp)
## 2612 Query protein or transcript ID
## 2613 Last common ancestor with Squirrel
## 2614 Squirrel homology type
## 2615 %id. target Squirrel gene identical to query gene
## 2616 %id. query gene identical to target Squirrel gene
## 2617 Squirrel Gene-order conservation score
## 2618 Squirrel Whole-genome alignment coverage
## 2619 Squirrel orthology confidence [0 low, 1 high]
## 2620 Steppe mouse gene stable ID
## 2621 Steppe mouse gene name
## 2622 Steppe mouse protein or transcript stable ID
## 2623 Steppe mouse chromosome/scaffold name
## 2624 Steppe mouse chromosome/scaffold start (bp)
## 2625 Steppe mouse chromosome/scaffold end (bp)
## 2626 Query protein or transcript ID
## 2627 Last common ancestor with Steppe mouse
## 2628 Steppe mouse homology type
## 2629 %id. target Steppe mouse gene identical to query gene
## 2630 %id. query gene identical to target Steppe mouse gene
## 2631 Steppe mouse Gene-order conservation score
## 2632 Steppe mouse Whole-genome alignment coverage
## 2633 Steppe mouse orthology confidence [0 low, 1 high]
## 2634 Stickleback gene stable ID
## 2635 Stickleback gene name
## 2636 Stickleback protein or transcript stable ID
## 2637 Stickleback chromosome/scaffold name
## 2638 Stickleback chromosome/scaffold start (bp)
## 2639 Stickleback chromosome/scaffold end (bp)
## 2640 Query protein or transcript ID
## 2641 Last common ancestor with Stickleback
## 2642 Stickleback homology type
## 2643 %id. target Stickleback gene identical to query gene
## 2644 %id. query gene identical to target Stickleback gene
## 2645 Stickleback Gene-order conservation score
## 2646 Stickleback Whole-genome alignment coverage
## 2647 Stickleback orthology confidence [0 low, 1 high]
## 2648 Sumatran orangutan gene stable ID
## 2649 Sumatran orangutan gene name
## 2650 Sumatran orangutan protein or transcript stable ID
## 2651 Sumatran orangutan chromosome/scaffold name
## 2652 Sumatran orangutan chromosome/scaffold start (bp)
## 2653 Sumatran orangutan chromosome/scaffold end (bp)
## 2654 Query protein or transcript ID
## 2655 Last common ancestor with Sumatran orangutan
## 2656 Sumatran orangutan homology type
## 2657 %id. target Sumatran orangutan gene identical to query gene
## 2658 %id. query gene identical to target Sumatran orangutan gene
## 2659 Sumatran orangutan Gene-order conservation score
## 2660 Sumatran orangutan Whole-genome alignment coverage
## 2661 Sumatran orangutan orthology confidence [0 low, 1 high]
## 2662 Tarsier gene stable ID
## 2663 Tarsier gene name
## 2664 Tarsier protein or transcript stable ID
## 2665 Tarsier chromosome/scaffold name
## 2666 Tarsier chromosome/scaffold start (bp)
## 2667 Tarsier chromosome/scaffold end (bp)
## 2668 Query protein or transcript ID
## 2669 Last common ancestor with Tarsier
## 2670 Tarsier homology type
## 2671 %id. target Tarsier gene identical to query gene
## 2672 %id. query gene identical to target Tarsier gene
## 2673 Tarsier Gene-order conservation score
## 2674 Tarsier Whole-genome alignment coverage
## 2675 Tarsier orthology confidence [0 low, 1 high]
## 2676 Tasmanian devil gene stable ID
## 2677 Tasmanian devil gene name
## 2678 Tasmanian devil protein or transcript stable ID
## 2679 Tasmanian devil chromosome/scaffold name
## 2680 Tasmanian devil chromosome/scaffold start (bp)
## 2681 Tasmanian devil chromosome/scaffold end (bp)
## 2682 Query protein or transcript ID
## 2683 Last common ancestor with Tasmanian devil
## 2684 Tasmanian devil homology type
## 2685 %id. target Tasmanian devil gene identical to query gene
## 2686 %id. query gene identical to target Tasmanian devil gene
## 2687 Tasmanian devil Gene-order conservation score
## 2688 Tasmanian devil orthology confidence [0 low, 1 high]
## 2689 Tetraodon gene stable ID
## 2690 Tetraodon gene name
## 2691 Tetraodon protein or transcript stable ID
## 2692 Tetraodon chromosome/scaffold name
## 2693 Tetraodon chromosome/scaffold start (bp)
## 2694 Tetraodon chromosome/scaffold end (bp)
## 2695 Query protein or transcript ID
## 2696 Last common ancestor with Tetraodon
## 2697 Tetraodon homology type
## 2698 %id. target Tetraodon gene identical to query gene
## 2699 %id. query gene identical to target Tetraodon gene
## 2700 Tetraodon Gene-order conservation score
## 2701 Tetraodon Whole-genome alignment coverage
## 2702 Tetraodon orthology confidence [0 low, 1 high]
## 2703 Three-toed box turtle gene stable ID
## 2704 Three-toed box turtle gene name
## 2705 Three-toed box turtle protein or transcript stable ID
## 2706 Three-toed box turtle chromosome/scaffold name
## 2707 Three-toed box turtle chromosome/scaffold start (bp)
## 2708 Three-toed box turtle chromosome/scaffold end (bp)
## 2709 Query protein or transcript ID
## 2710 Last common ancestor with Three-toed box turtle
## 2711 Three-toed box turtle homology type
## 2712 %id. target Three-toed box turtle gene identical to query gene
## 2713 %id. query gene identical to target Three-toed box turtle gene
## 2714 Three-toed box turtle Gene-order conservation score
## 2715 Three-toed box turtle Whole-genome alignment coverage
## 2716 Three-toed box turtle orthology confidence [0 low, 1 high]
## 2717 Tiger gene stable ID
## 2718 Tiger gene name
## 2719 Tiger protein or transcript stable ID
## 2720 Tiger chromosome/scaffold name
## 2721 Tiger chromosome/scaffold start (bp)
## 2722 Tiger chromosome/scaffold end (bp)
## 2723 Query protein or transcript ID
## 2724 Last common ancestor with Tiger
## 2725 Tiger homology type
## 2726 %id. target Tiger gene identical to query gene
## 2727 %id. query gene identical to target Tiger gene
## 2728 Tiger Gene-order conservation score
## 2729 Tiger Whole-genome alignment coverage
## 2730 Tiger orthology confidence [0 low, 1 high]
## 2731 Tiger tail seahorse gene stable ID
## 2732 Tiger tail seahorse gene name
## 2733 Tiger tail seahorse protein or transcript stable ID
## 2734 Tiger tail seahorse chromosome/scaffold name
## 2735 Tiger tail seahorse chromosome/scaffold start (bp)
## 2736 Tiger tail seahorse chromosome/scaffold end (bp)
## 2737 Query protein or transcript ID
## 2738 Last common ancestor with Tiger tail seahorse
## 2739 Tiger tail seahorse homology type
## 2740 %id. target Tiger tail seahorse gene identical to query gene
## 2741 %id. query gene identical to target Tiger tail seahorse gene
## 2742 Tiger tail seahorse Gene-order conservation score
## 2743 Tiger tail seahorse Whole-genome alignment coverage
## 2744 Tiger tail seahorse orthology confidence [0 low, 1 high]
## 2745 Tongue sole gene stable ID
## 2746 Tongue sole gene name
## 2747 Tongue sole protein or transcript stable ID
## 2748 Tongue sole chromosome/scaffold name
## 2749 Tongue sole chromosome/scaffold start (bp)
## 2750 Tongue sole chromosome/scaffold end (bp)
## 2751 Query protein or transcript ID
## 2752 Last common ancestor with Tongue sole
## 2753 Tongue sole homology type
## 2754 %id. target Tongue sole gene identical to query gene
## 2755 %id. query gene identical to target Tongue sole gene
## 2756 Tongue sole Gene-order conservation score
## 2757 Tongue sole Whole-genome alignment coverage
## 2758 Tongue sole orthology confidence [0 low, 1 high]
## 2759 Tree Shrew gene stable ID
## 2760 Tree Shrew gene name
## 2761 Tree Shrew protein or transcript stable ID
## 2762 Tree Shrew chromosome/scaffold name
## 2763 Tree Shrew chromosome/scaffold start (bp)
## 2764 Tree Shrew chromosome/scaffold end (bp)
## 2765 Query protein or transcript ID
## 2766 Last common ancestor with Tree Shrew
## 2767 Tree Shrew homology type
## 2768 %id. target Tree Shrew gene identical to query gene
## 2769 %id. query gene identical to target Tree Shrew gene
## 2770 Tree Shrew Gene-order conservation score
## 2771 Tree Shrew Whole-genome alignment coverage
## 2772 Tree Shrew orthology confidence [0 low, 1 high]
## 2773 Tropical clawed frog gene stable ID
## 2774 Tropical clawed frog gene name
## 2775 Tropical clawed frog protein or transcript stable ID
## 2776 Tropical clawed frog chromosome/scaffold name
## 2777 Tropical clawed frog chromosome/scaffold start (bp)
## 2778 Tropical clawed frog chromosome/scaffold end (bp)
## 2779 Query protein or transcript ID
## 2780 Last common ancestor with Tropical clawed frog
## 2781 Tropical clawed frog homology type
## 2782 %id. target Tropical clawed frog gene identical to query gene
## 2783 %id. query gene identical to target Tropical clawed frog gene
## 2784 Tropical clawed frog Gene-order conservation score
## 2785 Tropical clawed frog orthology confidence [0 low, 1 high]
## 2786 Tuatara gene stable ID
## 2787 Tuatara gene name
## 2788 Tuatara protein or transcript stable ID
## 2789 Tuatara chromosome/scaffold name
## 2790 Tuatara chromosome/scaffold start (bp)
## 2791 Tuatara chromosome/scaffold end (bp)
## 2792 Query protein or transcript ID
## 2793 Last common ancestor with Tuatara
## 2794 Tuatara homology type
## 2795 %id. target Tuatara gene identical to query gene
## 2796 %id. query gene identical to target Tuatara gene
## 2797 Tuatara Gene-order conservation score
## 2798 Tuatara Whole-genome alignment coverage
## 2799 Tuatara orthology confidence [0 low, 1 high]
## 2800 Turbot gene stable ID
## 2801 Turbot gene name
## 2802 Turbot protein or transcript stable ID
## 2803 Turbot chromosome/scaffold name
## 2804 Turbot chromosome/scaffold start (bp)
## 2805 Turbot chromosome/scaffold end (bp)
## 2806 Query protein or transcript ID
## 2807 Last common ancestor with Turbot
## 2808 Turbot homology type
## 2809 %id. target Turbot gene identical to query gene
## 2810 %id. query gene identical to target Turbot gene
## 2811 Turbot Gene-order conservation score
## 2812 Turbot orthology confidence [0 low, 1 high]
## 2813 Turkey gene stable ID
## 2814 Turkey gene name
## 2815 Turkey protein or transcript stable ID
## 2816 Turkey chromosome/scaffold name
## 2817 Turkey chromosome/scaffold start (bp)
## 2818 Turkey chromosome/scaffold end (bp)
## 2819 Query protein or transcript ID
## 2820 Last common ancestor with Turkey
## 2821 Turkey homology type
## 2822 %id. target Turkey gene identical to query gene
## 2823 %id. query gene identical to target Turkey gene
## 2824 Turkey Gene-order conservation score
## 2825 Turkey orthology confidence [0 low, 1 high]
## 2826 Turquoise killifish gene stable ID
## 2827 Turquoise killifish gene name
## 2828 Turquoise killifish protein or transcript stable ID
## 2829 Turquoise killifish chromosome/scaffold name
## 2830 Turquoise killifish chromosome/scaffold start (bp)
## 2831 Turquoise killifish chromosome/scaffold end (bp)
## 2832 Query protein or transcript ID
## 2833 Last common ancestor with Turquoise killifish
## 2834 Turquoise killifish homology type
## 2835 %id. target Turquoise killifish gene identical to query gene
## 2836 %id. query gene identical to target Turquoise killifish gene
## 2837 Turquoise killifish Gene-order conservation score
## 2838 Turquoise killifish Whole-genome alignment coverage
## 2839 Turquoise killifish orthology confidence [0 low, 1 high]
## 2840 Upper Galilee mountains blind mole rat gene stable ID
## 2841 Upper Galilee mountains blind mole rat gene name
## 2842 Upper Galilee mountains blind mole rat protein or transcript stable ID
## 2843 Upper Galilee mountains blind mole rat chromosome/scaffold name
## 2844 Upper Galilee mountains blind mole rat chromosome/scaffold start (bp)
## 2845 Upper Galilee mountains blind mole rat chromosome/scaffold end (bp)
## 2846 Query protein or transcript ID
## 2847 Last common ancestor with Upper Galilee mountains blind mole rat
## 2848 Upper Galilee mountains blind mole rat homology type
## 2849 %id. target Upper Galilee mountains blind mole rat gene identical to query gene
## 2850 %id. query gene identical to target Upper Galilee mountains blind mole rat gene
## 2851 Upper Galilee mountains blind mole rat Gene-order conservation score
## 2852 Upper Galilee mountains blind mole rat Whole-genome alignment coverage
## 2853 Upper Galilee mountains blind mole rat orthology confidence [0 low, 1 high]
## 2854 Vaquita gene stable ID
## 2855 Vaquita gene name
## 2856 Vaquita protein or transcript stable ID
## 2857 Vaquita chromosome/scaffold name
## 2858 Vaquita chromosome/scaffold start (bp)
## 2859 Vaquita chromosome/scaffold end (bp)
## 2860 Query protein or transcript ID
## 2861 Last common ancestor with Vaquita
## 2862 Vaquita homology type
## 2863 %id. target Vaquita gene identical to query gene
## 2864 %id. query gene identical to target Vaquita gene
## 2865 Vaquita Gene-order conservation score
## 2866 Vaquita Whole-genome alignment coverage
## 2867 Vaquita orthology confidence [0 low, 1 high]
## 2868 Vervet-AGM gene stable ID
## 2869 Vervet-AGM gene name
## 2870 Vervet-AGM protein or transcript stable ID
## 2871 Vervet-AGM chromosome/scaffold name
## 2872 Vervet-AGM chromosome/scaffold start (bp)
## 2873 Vervet-AGM chromosome/scaffold end (bp)
## 2874 Query protein or transcript ID
## 2875 Last common ancestor with Vervet-AGM
## 2876 Vervet-AGM homology type
## 2877 %id. target Vervet-AGM gene identical to query gene
## 2878 %id. query gene identical to target Vervet-AGM gene
## 2879 Vervet-AGM Gene-order conservation score
## 2880 Vervet-AGM Whole-genome alignment coverage
## 2881 Vervet-AGM orthology confidence [0 low, 1 high]
## 2882 Wallaby gene stable ID
## 2883 Wallaby gene name
## 2884 Wallaby protein or transcript stable ID
## 2885 Wallaby chromosome/scaffold name
## 2886 Wallaby chromosome/scaffold start (bp)
## 2887 Wallaby chromosome/scaffold end (bp)
## 2888 Query protein or transcript ID
## 2889 Last common ancestor with Wallaby
## 2890 Wallaby homology type
## 2891 %id. target Wallaby gene identical to query gene
## 2892 %id. query gene identical to target Wallaby gene
## 2893 Wallaby Gene-order conservation score
## 2894 Wallaby Whole-genome alignment coverage
## 2895 Wallaby orthology confidence [0 low, 1 high]
## 2896 White-tufted-ear marmoset gene stable ID
## 2897 White-tufted-ear marmoset gene name
## 2898 White-tufted-ear marmoset protein or transcript stable ID
## 2899 White-tufted-ear marmoset chromosome/scaffold name
## 2900 White-tufted-ear marmoset chromosome/scaffold start (bp)
## 2901 White-tufted-ear marmoset chromosome/scaffold end (bp)
## 2902 Query protein or transcript ID
## 2903 Last common ancestor with White-tufted-ear marmoset
## 2904 White-tufted-ear marmoset homology type
## 2905 %id. target White-tufted-ear marmoset gene identical to query gene
## 2906 %id. query gene identical to target White-tufted-ear marmoset gene
## 2907 White-tufted-ear marmoset Gene-order conservation score
## 2908 White-tufted-ear marmoset Whole-genome alignment coverage
## 2909 White-tufted-ear marmoset orthology confidence [0 low, 1 high]
## 2910 Wild yak gene stable ID
## 2911 Wild yak gene name
## 2912 Wild yak protein or transcript stable ID
## 2913 Wild yak chromosome/scaffold name
## 2914 Wild yak chromosome/scaffold start (bp)
## 2915 Wild yak chromosome/scaffold end (bp)
## 2916 Query protein or transcript ID
## 2917 Last common ancestor with Wild yak
## 2918 Wild yak homology type
## 2919 %id. target Wild yak gene identical to query gene
## 2920 %id. query gene identical to target Wild yak gene
## 2921 Wild yak Gene-order conservation score
## 2922 Wild yak Whole-genome alignment coverage
## 2923 Wild yak orthology confidence [0 low, 1 high]
## 2924 Yarkand deer gene stable ID
## 2925 Yarkand deer gene name
## 2926 Yarkand deer protein or transcript stable ID
## 2927 Yarkand deer chromosome/scaffold name
## 2928 Yarkand deer chromosome/scaffold start (bp)
## 2929 Yarkand deer chromosome/scaffold end (bp)
## 2930 Query protein or transcript ID
## 2931 Last common ancestor with Yarkand deer
## 2932 Yarkand deer homology type
## 2933 %id. target Yarkand deer gene identical to query gene
## 2934 %id. query gene identical to target Yarkand deer gene
## 2935 Yarkand deer Gene-order conservation score
## 2936 Yarkand deer Whole-genome alignment coverage
## 2937 Yarkand deer orthology confidence [0 low, 1 high]
## 2938 Yellowtail amberjack gene stable ID
## 2939 Yellowtail amberjack gene name
## 2940 Yellowtail amberjack protein or transcript stable ID
## 2941 Yellowtail amberjack chromosome/scaffold name
## 2942 Yellowtail amberjack chromosome/scaffold start (bp)
## 2943 Yellowtail amberjack chromosome/scaffold end (bp)
## 2944 Query protein or transcript ID
## 2945 Last common ancestor with Yellowtail amberjack
## 2946 Yellowtail amberjack homology type
## 2947 %id. target Yellowtail amberjack gene identical to query gene
## 2948 %id. query gene identical to target Yellowtail amberjack gene
## 2949 Yellowtail amberjack Gene-order conservation score
## 2950 Yellowtail amberjack Whole-genome alignment coverage
## 2951 Yellowtail amberjack orthology confidence [0 low, 1 high]
## 2952 Zebra finch gene stable ID
## 2953 Zebra finch gene name
## 2954 Zebra finch protein or transcript stable ID
## 2955 Zebra finch chromosome/scaffold name
## 2956 Zebra finch chromosome/scaffold start (bp)
## 2957 Zebra finch chromosome/scaffold end (bp)
## 2958 Query protein or transcript ID
## 2959 Last common ancestor with Zebra finch
## 2960 Zebra finch homology type
## 2961 %id. target Zebra finch gene identical to query gene
## 2962 %id. query gene identical to target Zebra finch gene
## 2963 Zebra finch Gene-order conservation score
## 2964 Zebra finch Whole-genome alignment coverage
## 2965 Zebra finch orthology confidence [0 low, 1 high]
## 2966 Zebra mbuna gene stable ID
## 2967 Zebra mbuna gene name
## 2968 Zebra mbuna protein or transcript stable ID
## 2969 Zebra mbuna chromosome/scaffold name
## 2970 Zebra mbuna chromosome/scaffold start (bp)
## 2971 Zebra mbuna chromosome/scaffold end (bp)
## 2972 Query protein or transcript ID
## 2973 Last common ancestor with Zebra mbuna
## 2974 Zebra mbuna homology type
## 2975 %id. target Zebra mbuna gene identical to query gene
## 2976 %id. query gene identical to target Zebra mbuna gene
## 2977 Zebra mbuna Gene-order conservation score
## 2978 Zebra mbuna Whole-genome alignment coverage
## 2979 Zebra mbuna orthology confidence [0 low, 1 high]
## 2980 Zebrafish gene stable ID
## 2981 Zebrafish gene name
## 2982 Zebrafish protein or transcript stable ID
## 2983 Zebrafish chromosome/scaffold name
## 2984 Zebrafish chromosome/scaffold start (bp)
## 2985 Zebrafish chromosome/scaffold end (bp)
## 2986 Query protein or transcript ID
## 2987 Last common ancestor with Zebrafish
## 2988 Zebrafish homology type
## 2989 %id. target Zebrafish gene identical to query gene
## 2990 %id. query gene identical to target Zebrafish gene
## 2991 Zebrafish Gene-order conservation score
## 2992 Zebrafish Whole-genome alignment coverage
## 2993 Zebrafish orthology confidence [0 low, 1 high]
## 2994 Zig-zag eel gene stable ID
## 2995 Zig-zag eel gene name
## 2996 Zig-zag eel protein or transcript stable ID
## 2997 Zig-zag eel chromosome/scaffold name
## 2998 Zig-zag eel chromosome/scaffold start (bp)
## 2999 Zig-zag eel chromosome/scaffold end (bp)
## 3000 Query protein or transcript ID
## 3001 Last common ancestor with Zig-zag eel
## 3002 Zig-zag eel homology type
## 3003 %id. target Zig-zag eel gene identical to query gene
## 3004 %id. query gene identical to target Zig-zag eel gene
## 3005 Zig-zag eel Gene-order conservation score
## 3006 Zig-zag eel orthology confidence [0 low, 1 high]
## 3007 Human paralogue gene stable ID
## 3008 Human paralogue associated gene name
## 3009 Human paralogue protein or transcript ID
## 3010 Human paralogue chromosome/scaffold name
## 3011 Human paralogue chromosome/scaffold start (bp)
## 3012 Human paralogue chromosome/scaffold end (bp)
## 3013 Paralogue query protein or transcript ID
## 3014 Paralogue last common ancestor with Human
## 3015 Human paralogue homology type
## 3016 Paralogue %id. target Human gene identical to query gene
## 3017 Paralogue %id. query gene identical to target Human gene
## 3018 Gene stable ID
## 3019 Gene stable ID version
## 3020 Version (gene)
## 3021 Transcript stable ID
## 3022 Transcript stable ID version
## 3023 Version (transcript)
## 3024 Protein stable ID
## 3025 Protein stable ID version
## 3026 Version (protein)
## 3027 Chromosome/scaffold name
## 3028 Gene start (bp)
## 3029 Gene end (bp)
## 3030 Strand
## 3031 Karyotype band
## 3032 Gene name
## 3033 Source of gene name
## 3034 Transcript count
## 3035 Gene % GC content
## 3036 Gene description
## 3037 Variant name
## 3038 Variant source
## 3039 Variant source description
## 3040 Variant alleles
## 3041 Variant supporting evidence
## 3042 Mapweight
## 3043 Minor allele
## 3044 Minor allele frequency
## 3045 Minor allele count
## 3046 Clinical significance
## 3047 Transcript location (bp)
## 3048 Variant chromosome Strand
## 3049 Protein location (aa)
## 3050 chromosome/scaffold position start (bp)
## 3051 Chromosome/scaffold position end (bp)
## 3052 PolyPhen prediction
## 3053 PolyPhen score
## 3054 SIFT prediction
## 3055 SIFT score
## 3056 Distance to transcript
## 3057 CDS start
## 3058 CDS end
## 3059 Protein allele
## 3060 Variant consequence
## 3061 Consequence specific allele
## 3062 Gene stable ID
## 3063 Gene stable ID version
## 3064 Version (gene)
## 3065 Transcript stable ID
## 3066 Transcript stable ID version
## 3067 Version (transcript)
## 3068 Protein stable ID
## 3069 Protein stable ID version
## 3070 Version (protein)
## 3071 Chromosome/scaffold name
## 3072 Gene start (bp)
## 3073 Gene end (bp)
## 3074 Strand
## 3075 Karyotype band
## 3076 Gene name
## 3077 Source of gene name
## 3078 Transcript count
## 3079 Gene % GC content
## 3080 Gene description
## 3081 Variant name
## 3082 Variant source
## 3083 Variant source description
## 3084 Variant alleles
## 3085 Variant supporting evidence
## 3086 Mapweight
## 3087 Transcript location (bp)
## 3088 Variant chromosome/scaffold strand
## 3089 Protein location (aa)
## 3090 Chromosome/scaffold position start (bp)
## 3091 Chromosome/scaffold position end (bp)
## 3092 Distance to transcript
## 3093 CDS start
## 3094 CDS end
## 3095 Variant consequence
## 3096 Consequence specific allele
## 3097 Unspliced (Transcript)
## 3098 Unspliced (Gene)
## 3099 Flank (Transcript)
## 3100 Flank (Gene)
## 3101 Flank-coding region (Transcript)
## 3102 Flank-coding region (Gene)
## 3103 5' UTR
## 3104 3' UTR
## 3105 Exon sequences
## 3106 cDNA sequences
## 3107 Coding sequence
## 3108 Peptide
## 3109 upstream_flank
## 3110 downstream_flank
## 3111 Gene stable ID
## 3112 Gene stable ID version
## 3113 Gene description
## 3114 Gene name
## 3115 Source of gene name
## 3116 Chromosome/scaffold name
## 3117 Gene start (bp)
## 3118 Gene end (bp)
## 3119 Gene type
## 3120 Version (gene)
## 3121 UniParc ID
## 3122 UniProtKB/Swiss-Prot ID
## 3123 UniProtKB/TrEMBL ID
## 3124 CDS start (within cDNA)
## 3125 CDS end (within cDNA)
## 3126 5' UTR start
## 3127 5' UTR end
## 3128 3' UTR start
## 3129 3' UTR end
## 3130 Transcript stable ID
## 3131 Transcript stable ID version
## 3132 Protein stable ID
## 3133 Protein stable ID version
## 3134 Transcript type
## 3135 Version (transcript)
## 3136 Version (protein)
## 3137 Strand
## 3138 Transcript start (bp)
## 3139 Transcript end (bp)
## 3140 Transcription start site (TSS)
## 3141 Transcript length (including UTRs and CDS)
## 3142 CDS Length
## 3143 CDS start
## 3144 CDS end
## 3145 Exon stable ID
## 3146 Exon region start (bp)
## 3147 Exon region end (bp)
## 3148 Strand
## 3149 Exon rank in transcript
## 3150 Start phase
## 3151 End phase
## 3152 cDNA coding start
## 3153 cDNA coding end
## 3154 Genomic coding start
## 3155 Genomic coding end
## 3156 Constitutive exon
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## 202 structure
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## 239 structure
## 240 structure
## 241 structure
## 242 homologs
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## 2974 homologs
## 2975 homologs
## 2976 homologs
## 2977 homologs
## 2978 homologs
## 2979 homologs
## 2980 homologs
## 2981 homologs
## 2982 homologs
## 2983 homologs
## 2984 homologs
## 2985 homologs
## 2986 homologs
## 2987 homologs
## 2988 homologs
## 2989 homologs
## 2990 homologs
## 2991 homologs
## 2992 homologs
## 2993 homologs
## 2994 homologs
## 2995 homologs
## 2996 homologs
## 2997 homologs
## 2998 homologs
## 2999 homologs
## 3000 homologs
## 3001 homologs
## 3002 homologs
## 3003 homologs
## 3004 homologs
## 3005 homologs
## 3006 homologs
## 3007 homologs
## 3008 homologs
## 3009 homologs
## 3010 homologs
## 3011 homologs
## 3012 homologs
## 3013 homologs
## 3014 homologs
## 3015 homologs
## 3016 homologs
## 3017 homologs
## 3018 snp
## 3019 snp
## 3020 snp
## 3021 snp
## 3022 snp
## 3023 snp
## 3024 snp
## 3025 snp
## 3026 snp
## 3027 snp
## 3028 snp
## 3029 snp
## 3030 snp
## 3031 snp
## 3032 snp
## 3033 snp
## 3034 snp
## 3035 snp
## 3036 snp
## 3037 snp
## 3038 snp
## 3039 snp
## 3040 snp
## 3041 snp
## 3042 snp
## 3043 snp
## 3044 snp
## 3045 snp
## 3046 snp
## 3047 snp
## 3048 snp
## 3049 snp
## 3050 snp
## 3051 snp
## 3052 snp
## 3053 snp
## 3054 snp
## 3055 snp
## 3056 snp
## 3057 snp
## 3058 snp
## 3059 snp
## 3060 snp
## 3061 snp
## 3062 snp_somatic
## 3063 snp_somatic
## 3064 snp_somatic
## 3065 snp_somatic
## 3066 snp_somatic
## 3067 snp_somatic
## 3068 snp_somatic
## 3069 snp_somatic
## 3070 snp_somatic
## 3071 snp_somatic
## 3072 snp_somatic
## 3073 snp_somatic
## 3074 snp_somatic
## 3075 snp_somatic
## 3076 snp_somatic
## 3077 snp_somatic
## 3078 snp_somatic
## 3079 snp_somatic
## 3080 snp_somatic
## 3081 snp_somatic
## 3082 snp_somatic
## 3083 snp_somatic
## 3084 snp_somatic
## 3085 snp_somatic
## 3086 snp_somatic
## 3087 snp_somatic
## 3088 snp_somatic
## 3089 snp_somatic
## 3090 snp_somatic
## 3091 snp_somatic
## 3092 snp_somatic
## 3093 snp_somatic
## 3094 snp_somatic
## 3095 snp_somatic
## 3096 snp_somatic
## 3097 sequences
## 3098 sequences
## 3099 sequences
## 3100 sequences
## 3101 sequences
## 3102 sequences
## 3103 sequences
## 3104 sequences
## 3105 sequences
## 3106 sequences
## 3107 sequences
## 3108 sequences
## 3109 sequences
## 3110 sequences
## 3111 sequences
## 3112 sequences
## 3113 sequences
## 3114 sequences
## 3115 sequences
## 3116 sequences
## 3117 sequences
## 3118 sequences
## 3119 sequences
## 3120 sequences
## 3121 sequences
## 3122 sequences
## 3123 sequences
## 3124 sequences
## 3125 sequences
## 3126 sequences
## 3127 sequences
## 3128 sequences
## 3129 sequences
## 3130 sequences
## 3131 sequences
## 3132 sequences
## 3133 sequences
## 3134 sequences
## 3135 sequences
## 3136 sequences
## 3137 sequences
## 3138 sequences
## 3139 sequences
## 3140 sequences
## 3141 sequences
## 3142 sequences
## 3143 sequences
## 3144 sequences
## 3145 sequences
## 3146 sequences
## 3147 sequences
## 3148 sequences
## 3149 sequences
## 3150 sequences
## 3151 sequences
## 3152 sequences
## 3153 sequences
## 3154 sequences
## 3155 sequences
## 3156 sequencestx2gene <- getBM(attributes = c("ensembl_transcript_id_version", "hgnc_symbol"), mart = mart, useCache = FALSE)
head(tx2gene)## ensembl_transcript_id_version hgnc_symbol
## 1 ENST00000387314.1 MT-TF
## 2 ENST00000389680.2 MT-RNR1
## 3 ENST00000387342.1 MT-TV
## 4 ENST00000387347.2 MT-RNR2
## 5 ENST00000386347.1 MT-TL1
## 6 ENST00000361390.2 MT-ND1TXI object
txi <- tximport(files, type = "kallisto", tx2gene = tx2gene)
head(txi$counts)## D_CON1 D_CON2 D_CON3 D_TREAT1 D_TREAT2
## 320239.33685 279214.59791 310829.19263 3.660786e+05 3.268363e+05
## A1BG 79.16316 19.52848 16.26144 4.146486e+01 3.923610e+01
## A1CF 4.00000 0.00000 6.00253 4.006365e+00 4.031743e+00
## A2M 4126.00000 1005.00000 1374.00000 6.950000e+02 1.529000e+03
## A2ML1 17.93577 14.40054 13.08318 9.010019e+00 1.881112e+01
## A2MP1 7.00000 11.00000 2.00000 1.800000e+01 9.000000e+00
## D_TREAT3 H_CON1 H_CON2 H_CON3 H_CYTKN1
## 265697.16538 350090.2698 2.686039e+05 2.260295e+05 3.253813e+05
## A1BG 45.90271 56.5765 1.015497e+02 3.824340e+01 7.106578e+01
## A1CF 0.00000 1.0000 0.000000e+00 4.008713e+00 4.000000e+00
## A2M 2930.00000 3003.0000 8.760000e+02 5.580000e+02 6.465000e+03
## A2ML1 15.06801 16.6282 7.492394e+00 4.028411e+00 8.244331e+00
## A2MP1 4.00000 5.0000 3.000000e+00 1.000000e+01 1.000000e+01
## H_CYTKN2 H_CYTKN3 H_TREAT1 H_TREAT2 H_TREAT3
## 2.949614e+05 374090.09195 2.641537e+05 2.943063e+05 223570.33200
## A1BG 6.908696e+01 56.30732 6.004986e+01 4.121510e+01 61.27979
## A1CF 3.000659e+00 2.00000 7.009629e+00 1.009330e+00 0.00000
## A2M 3.740000e+02 1294.00000 1.070000e+02 1.854000e+03 102.00000
## A2ML1 5.297068e+00 12.00922 8.069787e+00 8.022131e+00 18.58668
## A2MP1 1.000000e+00 10.00000 3.000000e+00 1.300000e+01 3.00000Beware DDS object
dds <- DESeqDataSetFromTximport(txi, colData = samples, design = ~ replicate + condition )Start to change case by case Relevel
dds$condition <- relevel(dds$condition, ref = "healthy_treatment")
dds <- DESeq(dds)
resultsNames(dds)## [1] "Intercept"
## [2] "replicate_2_vs_1"
## [3] "replicate_3_vs_1"
## [4] "condition_disease_control_vs_healthy_treatment"
## [5] "condition_disease_treatment_vs_healthy_treatment"
## [6] "condition_healthy_control_vs_healthy_treatment"
## [7] "condition_healthy_cytokine_vs_healthy_treatment"## show post hoc re-leveling doesn't work:
#dds$condition <- relevel(dds$condition, ref = "lung")
#resultsNames(dds)extract counts
counts <- counts(dds, normalized=TRUE)transform counts
## DESeq2 is weird about extracting transformations as a matrix - you must use `assay()`
log2 <- assay(normTransform(dds))
rld <- assay(rlog(dds))## x-axis is the transformed mean not the raw mean..
log2_plt <- meanSdPlot(log2, ranks=FALSE, plot=FALSE)
log2_plt$gg + ggtitle("Log2 + PC Transformation") + xlim(0,20)
rld_plt <- meanSdPlot(rld, ranks=FALSE, plot=FALSE)
rld_plt$gg + ggtitle("Rlog Transformation") + xlim(0,20)
Sample heatmap
rld <- assay(rlog(dds))
sampleDists <- dist(t(rld))
## Place distances in matrix
sampleDistMatrix <- as.matrix(sampleDists)
## Optional, remove colnames
colnames(sampleDistMatrix) <- NULL
## create annotation dataframe
ann <- data.frame(Condition = samples$condition)
col <- c("blue", "red1")
names(col) <- c("treatment", "control")
ann_col <- list(Condition = col)
## match annotation rownames to distance mat
rownames(ann) <- rownames(sampleDistMatrix)
pheatmap(mat=sampleDistMatrix,
## pass distance metric calculated to heatmap
clustering_distance_rows=sampleDists,
clustering_distance_cols=sampleDists,
## pass annotation dataframe
## add colors
#annotation_colors = ann_col,
## heatmap colours
col=hcl.colors(100,"GnBu",rev=T))
PCA
p <- pca(rld, metadata = samples)
biplot(p,
colby = 'condition',
colkey = c('healthy_treatment'='royalblue', 'healthy_control'='red1',
'healthy_cytokine' = 'forestgreen', 'disease_control' = 'purple',
'disease_treatment' = 'gold'),
ellipse = T,
hline = 0,
vline = 0,
legendPosition = 'right',
legendLabSize = 12,
legendIconSize = 8.0,
title = 'PCA bi-plot',
subtitle = 'PC1 versus PC2')
DESeq
# make healthy_cytokine vs healthy_control
h_cyto_vs_h_treat <- results(dds, filterFun=ihw, alpha=0.05, c("condition", "healthy_cytokine", "healthy_treatment"))
res1 <- lfcShrink(dds=dds, res=h_cyto_vs_h_treat, coef=7, type="apeglm")
summary(res1)##
## out of 23094 with nonzero total read count
## adjusted p-value < 0.05
## LFC > 0 (up) : 393, 1.7%
## LFC < 0 (down) : 197, 0.85%
## outliers [1] : 0, 0%
## [1] see 'cooksCutoff' argument of ?results
## see metadata(res)$ihwResult on hypothesis weightingfunction
#resdf<- as.data.frame(res)
get_upregulated <- function(df){
key <- intersect(rownames(df)[which(df$log2FoldChange>=1)], rownames(df)[which(df$padj<=0.05)])
results <- as.data.frame((df)[which(rownames(df) %in% key),])
return(results)
}
get_downregulated <- function(df){
key <- intersect(rownames(df)[which(df$log2FoldChange<=-1)],rownames(df)[which(df$padj<=0.05)])
results <- as.data.frame((df)[which(rownames(df) %in% key),])
return(results)
}
de_up <- get_upregulated(as.data.frame(res1))
de_up## baseMean log2FoldChange lfcSE pvalue padj
## ACTG2 41.26182 3.068473 2.4218701 4.577262e-04 2.428201e-02
## ADM2 1075.36862 1.382755 0.3166765 3.133233e-07 1.406671e-04
## ARHGAP6 97.85430 1.391511 0.7741641 1.080291e-03 4.190971e-02
## ARL4C 1698.91737 1.193597 0.2045638 2.342403e-10 2.770638e-07
## BDNF 901.35053 1.179439 0.5630810 9.028570e-04 3.661678e-02
## C19orf33 102.04419 2.003987 0.5782448 1.075659e-05 1.807732e-03
## C6orf132 545.32785 1.065569 0.3623895 1.155263e-04 8.124581e-03
## CAV1 15817.00009 1.108592 0.1939639 3.573617e-10 2.770638e-07
## CCDC103 77.39206 1.721571 0.5026341 2.114908e-05 2.636834e-03
## CCL20 112.04274 2.252084 0.7958529 5.216716e-05 5.405629e-03
## CHAC1 903.93384 1.194482 0.3058982 3.549640e-06 1.321926e-03
## COL13A1 84.60947 1.655056 0.6683882 2.550623e-04 2.092880e-02
## COL4A4 128.16294 1.500304 0.5668471 1.685393e-04 1.305856e-02
## COL5A3 1964.58783 1.668597 0.5381476 5.271495e-05 5.392299e-03
## CREB3L1 2851.53912 1.209840 0.1469923 8.244222e-18 8.160075e-14
## CTNND2 51.35476 1.832610 0.6692430 1.814269e-04 1.660251e-02
## CX3CL1 721.44707 1.056964 0.4066257 2.646078e-04 1.708439e-02
## CYP24A1 394.71666 3.229928 1.1626034 8.655467e-05 6.897181e-03
## DES 63.13858 1.213804 0.5594736 9.863090e-04 3.617077e-02
## DUSP4 1202.22541 1.061494 0.4782019 7.982714e-04 3.433753e-02
## ERFE 1127.97287 1.597205 0.2248707 4.973679e-14 4.809202e-10
## F5 66.45194 4.319387 1.1267378 8.504060e-07 2.767972e-04
## FAM167A 224.21606 1.141165 0.4145331 1.825746e-04 1.375921e-02
## FST 6308.00587 1.492713 0.4395107 2.507869e-05 1.478646e-03
## GABBR2 72.06285 2.840242 0.4983349 4.678588e-10 1.166600e-06
## GDF6 4250.06493 1.416646 0.3461960 1.431556e-06 1.829299e-04
## GPR39 80.80865 1.137347 0.5391530 8.893516e-04 3.457431e-02
## GRIP2 143.88883 2.064704 1.0564159 9.223456e-04 3.594048e-02
## HMGA1 2196.79384 1.089170 0.3786542 1.260803e-04 5.998607e-03
## HSPB2 348.11933 1.070098 0.2840323 7.103816e-06 1.104937e-03
## IL33 58.98826 1.481739 0.6479141 5.889586e-04 3.519428e-02
## INHBE 56.43508 1.348531 0.4969806 2.119818e-04 1.375921e-02
## IRX3 836.78318 1.064666 0.4340738 4.159665e-04 3.608720e-02
## ITGA7 966.40189 1.118821 0.4816593 5.848595e-04 4.408055e-02
## KCNG1 630.17408 1.316524 0.3944325 2.225636e-05 3.251354e-03
## KCNN4 397.10554 2.095198 0.3963713 4.824083e-09 5.222572e-06
## KCNQ5 224.31403 1.349969 0.6934686 7.647690e-04 3.433753e-02
## KCTD16 192.11300 1.738402 0.4266833 1.383112e-06 4.349395e-04
## KRT7 2424.48339 1.155440 0.3523105 3.786162e-05 3.830305e-03
## LRRC15 344.55355 1.514991 0.4614287 2.900649e-05 3.118282e-03
## LRRC32 102.32457 1.390573 0.5551586 3.268122e-04 2.044973e-02
## LRRN3 53.91866 1.427904 0.7840080 1.104768e-03 3.931934e-02
## LTBP1 6913.81851 1.122503 0.5999394 1.258508e-03 2.321039e-02
## LYPD1 433.36658 2.373743 0.6674901 7.659404e-06 1.356058e-03
## MATN3 168.85070 1.249742 0.3249353 4.948312e-06 1.089215e-03
## MEDAG 1529.80809 1.544442 0.6769144 5.645052e-04 1.835977e-02
## MGLL 4983.16990 1.467751 0.4638233 3.593416e-05 1.859493e-03
## MTHFD2 5071.17095 1.245100 0.2437876 1.397836e-08 5.222572e-06
## NOTCH3 3460.89302 1.527294 0.4591108 2.540606e-05 2.007341e-03
## PAPPA2 370.42938 1.575089 0.5561850 1.406385e-04 9.741014e-03
## PDCD1LG2 354.72223 1.073718 0.3663538 1.159710e-04 9.194795e-03
## PDE8B 132.79584 1.158749 0.5224890 7.414670e-04 3.744693e-02
## PLPPR4 114.09372 1.821378 0.5279796 1.857184e-05 2.686404e-03
## POU2F2 165.71638 2.208184 0.8470802 2.235364e-04 1.593949e-02
## PSAT1 8769.32547 1.183873 0.2823078 1.146869e-06 1.553307e-04
## PTGS1 320.82927 1.593234 0.4652669 2.129898e-05 2.533542e-03
## PTHLH 50.72390 2.390228 0.7879437 5.972556e-05 5.392299e-03
## RAMP3 10.12557 4.281304 1.3182568 1.048351e-04 2.572351e-02
## RASD2 214.29846 1.690784 0.9330556 1.122769e-03 4.250813e-02
## RCAN1 16125.63290 1.175511 0.3287102 1.175321e-05 9.130927e-04
## RGMB 2737.86074 1.718776 1.0053742 1.030977e-03 2.680257e-02
## S100A2 337.90045 1.108233 0.2740726 2.155162e-06 5.054971e-04
## S100A3 266.56811 1.193359 0.2638768 2.672706e-07 8.802057e-05
## S100A4 12874.50555 1.356878 0.2651538 1.404833e-08 5.222572e-06
## SERPINE1 19086.97367 1.661130 0.4148564 2.126026e-06 2.464618e-04
## SLC12A2 1385.15307 1.116879 0.2821942 2.415155e-06 6.633427e-04
## SLCO4A1 93.00958 1.784434 0.9001089 7.499440e-04 3.392084e-02
## STC1 4235.70269 1.899880 1.4706827 2.389025e-03 3.433753e-02
## STC2 12740.84735 1.063521 0.3903645 2.050331e-04 6.589336e-03
## TAGLN 7126.98803 1.135126 0.4029215 1.389264e-04 4.955442e-03
## TENT5B 480.56382 1.251277 0.3838994 3.878991e-05 4.443324e-03
## TF 3258.09819 2.604538 1.3203894 4.822170e-04 1.663718e-02
## THBS1 81914.17245 1.148310 0.3821787 9.734904e-05 3.830305e-03
## TM4SF1 19718.03995 1.063438 0.2584143 1.678824e-06 2.095902e-04
## TM4SF20 261.90749 1.804967 0.4297757 8.340693e-07 2.622375e-04
## TMEM238 32.65346 1.630270 0.5534015 1.065690e-04 1.155341e-02
## TNFSF15 1114.62231 2.474136 0.4685386 2.977564e-09 5.222572e-06
## UPK1B 200.30740 1.624534 0.5913287 1.750636e-04 1.342877e-02
## UPP1 392.85155 1.208606 0.1831202 1.794991e-12 1.091093e-08
## VAMP8 132.26560 1.231815 0.4646764 2.295515e-04 1.609735e-02
## WFDC1 110.34056 2.217579 0.7679838 7.430870e-05 8.162732e-03de_down <- get_downregulated(as.data.frame(res1))
de_down## baseMean log2FoldChange lfcSE pvalue padj
## ADAM11 20.56184 -1.803412 0.6351512 1.438777e-04 3.722520e-02
## ADAMTSL2 13.20426 -1.910259 0.6920040 2.491619e-04 4.293121e-02
## C1orf226 42.60390 -1.301657 0.5116704 3.450207e-04 2.044973e-02
## CORIN 99.09387 -1.325947 0.4902311 1.995772e-04 1.458013e-02
## DACT3 131.74360 -1.209600 0.2544995 9.396716e-08 6.133115e-05
## GPR132 28.95375 -1.137004 0.5512042 1.125347e-03 4.163960e-02
## KLHDC9 120.02514 -1.206559 0.4282581 1.430635e-04 1.139886e-02
## LAMA3 62.77867 -1.124079 0.5379320 9.846240e-04 3.851025e-02
## NLGN3 48.70325 -1.095893 0.4100489 2.683048e-04 2.190227e-02
## NMRAL2P 132.50605 -1.531966 0.5652915 1.338988e-04 1.002882e-02
## PDZD2 207.65671 -1.028239 0.4640089 6.718521e-04 3.139205e-02
## PLA2R1 1362.45055 -1.018916 0.2644229 4.984968e-06 1.155361e-03
## PLB1 58.75292 -1.139384 0.3684458 7.106538e-05 6.285206e-03
## RFLNA 132.73017 -1.977566 0.4296043 1.570945e-07 8.802057e-05
## SAMD11 1431.85350 -1.099013 0.2937469 7.430619e-06 1.477697e-03
## SESN3 1569.38431 -1.242249 0.2815221 3.717547e-07 9.280378e-05
## SMOC2 2303.62843 -1.922967 0.4958501 3.423026e-06 5.186054e-04
## SWT1 99.96428 -1.232534 0.2683170 1.878903e-07 9.280378e-05
## TMEM150C 68.08887 -1.317710 0.5541418 5.036517e-04 2.434112e-02
## TNFSF14 81.81516 -1.001164 0.5292353 1.187390e-03 4.263563e-02
## TXNDC16 432.49532 -1.092773 0.2617615 1.178748e-06 2.841834e-04
## ZFHX2 68.63905 -1.061962 0.3430130 6.950236e-05 8.472607e-03
## ZIC1 1490.95797 -1.013862 0.4903038 1.036215e-03 4.008788e-02
## ZNF442 67.35068 -1.229135 0.4330094 1.391147e-04 9.921401e-03## remove NA values from results
library(EnhancedVolcano)
res <- results(dds, alpha=0.05, c('condition','healthy_cytokine','healthy_treatment'))
res1 <- na.omit(res)
## calculate min/max axis values for plot (optional)
min_width <- min(res1$log2FoldChange)
max_width <- max(res1$log2FoldChange)
max_height <- -log10(min(res1[res1$pvalue>0, 5]))
## Grab top 10 up-reg genes for plot
up <- subset(res1, res1$log2FoldChange > 1 & res1$pvalue <= 0.05)
up <- up[order(-up$log2FoldChange),]
up_list <- head(rownames(up), n=10L)
## Grab top 10 down-reg genes for plot
down <- subset(res1, res1$log2FoldChange < -1 & res1$pvalue <= 0.05)
down <- down[order(down$log2FoldChange),]
down_list <- head(rownames(down), n=10L)
## place top 20 DE genes in vector (optinal...)
plot_top_20 <- c(up_list, down_list)
plot_top_20## [1] "KDR" "AK4P1" "F13A1" "LDHC"
## [5] "F5" "ACTG2" "SYK" "MRGPRX3"
## [9] "PCDH20" "STON1-GTF2A1L" "FAM187A" "FAM90A15P"
## [13] "USP32P2" "C1QTNF7" "SPECC1L-ADORA2A" "INO80B-WBP1"
## [17] "HOXD11" "TBC1D3D" "IGFN1" "DDTL"EnhancedVolcano(res1,
lab=rownames(res1),
x="log2FoldChange",
y="pvalue",
selectLab=plot_top_20,
drawConnectors=TRUE,
legendPosition = "none",
FCcutoff=1.0,
pCutoff=0.05,
title="Volcano Plot",
subtitle="Healthy Cytokine vs Healthy Treatment",
caption = paste0('Total Genes = ', nrow(res1)),
xlim=c(-10, 10),
ylim=c(0, max_height))## Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
# without apeglm - not shrinkage
plotMA(h_cyto_vs_h_treat, ylim=c(-10,10))
# with shrinkage estimator - keep this plot
plotMA(res1, ylim=c(-10,12))
GO Pathway
Read GMT file
# read in gmt file
pathway <- gmtPathways("/Users/aungphyo/Downloads/c5.all.v2023.1.Hs.symbols.gmt.txt")
head(pathway, 1)## $GOBP_MITOCHONDRIAL_GENOME_MAINTENANCE
## [1] "AKT3" "PPARGC1A" "POLG2" "PARP1" "DNA2" "TYMP"
## [7] "FLCN" "PRIMPOL" "ENDOG" "STOX1" "SLC25A4" "LIG3"
## [13] "MEF2A" "MPV17" "OPA1" "RRM2B" "POLG" "SLC25A36"
## [19] "TWNK" "RRM1" "METTL4" "SSBP1" "TOP3A" "TP53"
## [25] "TEFM" "PIF1" "SESN2" "SLC25A33" "DNAJA3" "MGME1"
## [31] "LONP1"Create ranked gene list
Extract the gene names and associated log2FoldChanges from our healthy cytokine vs healthy control study to generate a ranked gene list.
## convert result object to dataframe
res <- as.data.frame(res1)
res$hgnc_symbol <- rownames(res)
# compute summary stat
fgsea_rank <- res %>%
dplyr::select(hgnc_symbol, log2FoldChange) %>%
na.omit() %>%
distinct() %>%
group_by(hgnc_symbol) %>%
summarize(log2foldchange=mean(log2FoldChange))
fgsea_rank## # A tibble: 15,155 × 2
## hgnc_symbol log2foldchange
## <chr> <dbl>
## 1 "" 0.0141
## 2 "A1BG" 0.719
## 3 "A2M" 1.59
## 4 "A2ML1" -0.910
## 5 "A4GALT" 0.443
## 6 "A4GNT" -0.402
## 7 "AAAS" -0.280
## 8 "AACS" 0.0695
## 9 "AADAT" -0.266
## 10 "AAGAB" -0.154
## # ℹ 15,145 more rowsConvert to a named list
rank <- deframe(fgsea_rank)
head(rank, 20)## A1BG A2M A2ML1 A4GALT A4GNT
## 0.014087068 0.718600147 1.592700274 -0.910159189 0.442862910 -0.402305792
## AAAS AACS AADAT AAGAB AAK1 AAMDC
## -0.279714445 0.069463615 -0.266159896 -0.154482210 0.051835381 -0.230911248
## AAMP AAR2 AARD AARS1 AARS2 AARSD1
## -0.071482423 0.007990664 0.363183582 0.172054823 -0.191294438 0.056334904
## AARSD1P1 AASDH
## -0.683100316 -0.333853174Run fgsea
# run fgsea
fgsea <- fgsea(pathways=pathway, stats=rank, nperm=1000)
fgseaResTidy <- fgsea %>%
as_tibble() %>%
arrange(desc(NES))
# Show in a nice table:
fgseaResTidy %>%
dplyr::select(-leadingEdge, -ES, -nMoreExtreme) %>%
arrange(padj) %>%
DT::datatable()Cluster Profiler of GO pathway
df <- as.data.frame(res1)
df$hgnc_symbol <- rownames(df)
info <- getBM(attributes=c("hgnc_symbol",
"entrezgene_id"),
filters = c("hgnc_symbol"),
values = df$hgnc_symbol,
mart = mart,
useCache=FALSE)
tmp <- merge(df, info, by="hgnc_symbol")
# subset the dataframe to include only stat sig genes
tmp <- tmp[tmp$padj < 0.05,]#OrgDb
OrgDb <- org.Hs.eg.db
geneList <- as.vector(tmp$log2FoldChange)
names(geneList) <- as.character(tmp$entrezgene_id)
gene <- na.omit(as.character(tmp$entrezgene_id))
gene_list<-sort(geneList,decreasing = TRUE)
# GO over-representation test
ego <- clusterProfiler::enrichGO(gene = gene,
OrgDb = OrgDb,
ont = "ALL",
pAdjustMethod = "BH",
pvalueCutoff = 0.05,
qvalueCutoff = 0.01,
readable = TRUE)
summary(ego)## Warning in summary(ego): summary method to convert the object to data.frame is
## deprecated, please use as.data.frame instead.## ONTOLOGY ID
## GO:0002181 BP GO:0002181
## GO:0030198 BP GO:0030198
## GO:0043062 BP GO:0043062
## GO:0045229 BP GO:0045229
## GO:0007178 BP GO:0007178
## GO:0006520 BP GO:0006520
## GO:0006700 BP GO:0006700
## GO:0006418 BP GO:0006418
## GO:0007595 BP GO:0007595
## GO:0043039 BP GO:0043039
## GO:0042273 BP GO:0042273
## GO:0043038 BP GO:0043038
## GO:0022626 CC GO:0022626
## GO:0044391 CC GO:0044391
## GO:0005840 CC GO:0005840
## GO:0022625 CC GO:0022625
## GO:0005925 CC GO:0005925
## GO:0030055 CC GO:0030055
## GO:0015934 CC GO:0015934
## GO:0022627 CC GO:0022627
## GO:0015935 CC GO:0015935
## GO:0042788 CC GO:0042788
## GO:0005844 CC GO:0005844
## GO:0005788 CC GO:0005788
## GO:0062023 CC GO:0062023
## GO:0005759 CC GO:0005759
## GO:0003735 MF GO:0003735
## GO:0004812 MF GO:0004812
## GO:0016875 MF GO:0016875
## GO:0030020 MF GO:0030020
## GO:0097110 MF GO:0097110
## GO:0005518 MF GO:0005518
## GO:0043236 MF GO:0043236
## Description
## GO:0002181 cytoplasmic translation
## GO:0030198 extracellular matrix organization
## GO:0043062 extracellular structure organization
## GO:0045229 external encapsulating structure organization
## GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
## GO:0006520 cellular amino acid metabolic process
## GO:0006700 C21-steroid hormone biosynthetic process
## GO:0006418 tRNA aminoacylation for protein translation
## GO:0007595 lactation
## GO:0043039 tRNA aminoacylation
## GO:0042273 ribosomal large subunit biogenesis
## GO:0043038 amino acid activation
## GO:0022626 cytosolic ribosome
## GO:0044391 ribosomal subunit
## GO:0005840 ribosome
## GO:0022625 cytosolic large ribosomal subunit
## GO:0005925 focal adhesion
## GO:0030055 cell-substrate junction
## GO:0015934 large ribosomal subunit
## GO:0022627 cytosolic small ribosomal subunit
## GO:0015935 small ribosomal subunit
## GO:0042788 polysomal ribosome
## GO:0005844 polysome
## GO:0005788 endoplasmic reticulum lumen
## GO:0062023 collagen-containing extracellular matrix
## GO:0005759 mitochondrial matrix
## GO:0003735 structural constituent of ribosome
## GO:0004812 aminoacyl-tRNA ligase activity
## GO:0016875 ligase activity, forming carbon-oxygen bonds
## GO:0030020 extracellular matrix structural constituent conferring tensile strength
## GO:0097110 scaffold protein binding
## GO:0005518 collagen binding
## GO:0043236 laminin binding
## GeneRatio BgRatio pvalue p.adjust qvalue
## GO:0002181 37/523 146/18800 2.819220e-25 1.209445e-21 1.118785e-21
## GO:0030198 25/523 307/18800 1.771552e-06 2.264802e-03 2.095032e-03
## GO:0043062 25/523 308/18800 1.878901e-06 2.264802e-03 2.095032e-03
## GO:0045229 25/523 310/18800 2.111704e-06 2.264802e-03 2.095032e-03
## GO:0007178 27/523 368/18800 4.980591e-06 3.803825e-03 3.518690e-03
## GO:0006520 23/523 285/18800 5.320036e-06 3.803825e-03 3.518690e-03
## GO:0006700 6/523 20/18800 1.252156e-05 7.673927e-03 7.098688e-03
## GO:0006418 8/523 41/18800 1.446786e-05 7.758392e-03 7.176822e-03
## GO:0007595 8/523 44/18800 2.494086e-05 1.058279e-02 9.789507e-03
## GO:0043039 8/523 44/18800 2.494086e-05 1.058279e-02 9.789507e-03
## GO:0042273 10/523 72/18800 2.905721e-05 1.058279e-02 9.789507e-03
## GO:0043038 8/523 45/18800 2.960222e-05 1.058279e-02 9.789507e-03
## GO:0022626 35/538 102/19594 3.504299e-29 1.713602e-26 1.552958e-26
## GO:0044391 38/538 178/19594 3.261217e-23 7.973675e-21 7.226170e-21
## GO:0005840 41/538 229/19594 6.899438e-22 1.124608e-19 1.019180e-19
## GO:0022625 22/538 58/19594 6.563978e-20 8.024464e-18 7.272197e-18
## GO:0005925 48/538 419/19594 4.607057e-17 4.505702e-15 4.083308e-15
## GO:0030055 48/538 428/19594 1.082621e-16 8.823364e-15 7.996203e-15
## GO:0015934 23/538 112/19594 3.678074e-14 2.569398e-12 2.328525e-12
## GO:0022627 13/538 43/19594 7.516028e-11 4.594172e-09 4.163484e-09
## GO:0015935 15/538 69/19594 4.532309e-10 2.462555e-08 2.231698e-08
## GO:0042788 9/538 31/19594 9.758981e-08 4.772142e-06 4.324769e-06
## GO:0005844 12/538 65/19594 1.740130e-07 7.735667e-06 7.010474e-06
## GO:0005788 22/538 311/19594 5.328564e-05 2.171390e-03 1.967829e-03
## GO:0062023 27/538 429/19594 6.053537e-05 2.277061e-03 2.063595e-03
## GO:0005759 27/538 473/19594 2.982576e-04 1.041771e-02 9.441085e-03
## GO:0003735 38/531 181/18410 3.279961e-22 2.476370e-19 2.320141e-19
## GO:0004812 8/531 41/18410 1.875910e-05 2.981493e-03 2.793396e-03
## GO:0016875 8/531 41/18410 1.875910e-05 2.981493e-03 2.793396e-03
## GO:0030020 8/531 41/18410 1.875910e-05 2.981493e-03 2.793396e-03
## GO:0097110 10/531 67/18410 2.073739e-05 2.981493e-03 2.793396e-03
## GO:0005518 10/531 68/18410 2.369399e-05 2.981493e-03 2.793396e-03
## GO:0043236 6/531 27/18410 9.884294e-05 1.066092e-02 9.988339e-03
## geneID
## GO:0002181 EIF3D/EIF3I/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0030198 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0043062 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0045229 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0007178 ACVR2B/ADAMTSL2/BMP6/CAV1/CAV2/COL1A2/CREBBP/DAB2/DACT2/DKK3/DUSP15/FST/GDF6/HIVEP1/INHBE/ITGA3/LOX/LRRC32/LTBP1/MYOCD/NOTCH2/NUMA1/RGMB/TF/THBS1/VEPH1/VIM
## GO:0006520 AASS/ASL/ASNS/ATF4/CARS1/CPS1/CSAD/EARS2/EPRS1/GARS1/GCSH/GGT1/GPT2/MTHFS/PHGDH/PSAT1/PYCR1/SARS1/SHMT2/TARS1/TPH1/WARS1/YARS1
## GO:0006700 ADM/AKR1B1/BMP6/DAB2/DKK3/TSPO
## GO:0006418 CARS1/EARS2/EPRS1/GARS1/SARS1/TARS1/WARS1/YARS1
## GO:0007595 ATP7B/CAV1/CCND1/GJA1/MTX1/NME1/SLC29A2/XBP1
## GO:0043039 CARS1/EARS2/EPRS1/GARS1/SARS1/TARS1/WARS1/YARS1
## GO:0042273 EBNA1BP2/EIF6/NLE1/NOP16/NPM1/RPL10/RPL23A/RPL35A/RPL5/RPL6
## GO:0043038 CARS1/EARS2/EPRS1/GARS1/SARS1/TARS1/WARS1/YARS1
## GO:0022626 RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0044391 MRPL3/MRPS24/MRPS33/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0005840 APEX1/BTF3/MRPL3/MRPS24/MRPS33/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A/SERP1
## GO:0022625 RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2
## GO:0005925 ACTR3/ARF6/ARPC2/ARPC5/CAPN2/CAPN5/CAV1/CAV2/CD44/DAB2/DCTN4/EPHA2/EVL/GJA1/HMGA1/HSPA1B/ITGA3/ITGA5/LIMS1/MAP2K1/MAP2K2/NPM1/PCBP2/PVR/RND3/RPL13A/RPL22/RPL23/RPL27/RPL31/RPL4/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS13/RPS16/RPS17/RPS19/RPS29/RPS3/RPS3A/RRAS2/SLC9A3R2/TM4SF20/TRIP6/VIM
## GO:0030055 ACTR3/ARF6/ARPC2/ARPC5/CAPN2/CAPN5/CAV1/CAV2/CD44/DAB2/DCTN4/EPHA2/EVL/GJA1/HMGA1/HSPA1B/ITGA3/ITGA5/LIMS1/MAP2K1/MAP2K2/NPM1/PCBP2/PVR/RND3/RPL13A/RPL22/RPL23/RPL27/RPL31/RPL4/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS13/RPS16/RPS17/RPS19/RPS29/RPS3/RPS3A/RRAS2/SLC9A3R2/TM4SF20/TRIP6/VIM
## GO:0015934 MRPL3/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2
## GO:0022627 RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0015935 MRPS24/MRPS33/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0042788 BTF3/RPL18A/RPL31/RPL36/RPL39/RPL41/RPL6/RPS21/RPS29
## GO:0005844 BTF3/PSMA6/RPL18A/RPL31/RPL36/RPL39/RPL41/RPL6/RPS21/RPS29/RPS3/VIM
## GO:0005788 ARSJ/CASQ1/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/COL6A1/COL6A2/ESD/EVA1A/F5/FKBP10/LTBP1/MATN3/QSOX1/SERPINH1/STC2/TF/THBS1/TXNDC16
## GO:0062023 ADAM11/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/COL6A1/COL6A2/CTSS/HDGF/INHBE/LAMA3/LOX/LOXL3/LRRC15/LTBP1/MATN3/MST1/NTN4/S100A4/S100A6/SERPINE1/SERPINH1/SMOC2/THBS1
## GO:0005759 AASS/ALDH1B1/ALKBH7/CASQ1/CPS1/DNAJC15/EARS2/FOXO3/GARS1/GCSH/GPT2/GRPEL1/MRPL3/MRPS24/MRPS33/MTERF1/MTHFD2/MTHFS/NME4/PPIF/PRDX5/PYCR1/RPS3/SHMT2/SSBP1/VDAC1/VDAC2
## GO:0003735 MRPL3/MRPS24/MRPS33/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0004812 CARS1/EARS2/EPRS1/GARS1/SARS1/TARS1/WARS1/YARS1
## GO:0016875 CARS1/EARS2/EPRS1/GARS1/SARS1/TARS1/WARS1/YARS1
## GO:0030020 COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/COL6A1/COL6A2
## GO:0097110 CACNA1G/CAV2/DLG4/GJA1/ITPR2/KRT8/MAP2K1/MAP2K2/NLGN3/VIM
## GO:0005518 CD44/COL5A3/COL6A1/COL6A2/CTSS/ITGA3/LOX/LRRC15/SERPINH1/THBS1
## GO:0043236 CTSS/ITGA3/ITGA7/LRRC15/NTN4/THBS1
## Count
## GO:0002181 37
## GO:0030198 25
## GO:0043062 25
## GO:0045229 25
## GO:0007178 27
## GO:0006520 23
## GO:0006700 6
## GO:0006418 8
## GO:0007595 8
## GO:0043039 8
## GO:0042273 10
## GO:0043038 8
## GO:0022626 35
## GO:0044391 38
## GO:0005840 41
## GO:0022625 22
## GO:0005925 48
## GO:0030055 48
## GO:0015934 23
## GO:0022627 13
## GO:0015935 15
## GO:0042788 9
## GO:0005844 12
## GO:0005788 22
## GO:0062023 27
## GO:0005759 27
## GO:0003735 38
## GO:0004812 8
## GO:0016875 8
## GO:0030020 8
## GO:0097110 10
## GO:0005518 10
## GO:0043236 6head(summary(ego))## Warning in summary(ego): summary method to convert the object to data.frame is
## deprecated, please use as.data.frame instead.## ONTOLOGY ID
## GO:0002181 BP GO:0002181
## GO:0030198 BP GO:0030198
## GO:0043062 BP GO:0043062
## GO:0045229 BP GO:0045229
## GO:0007178 BP GO:0007178
## GO:0006520 BP GO:0006520
## Description
## GO:0002181 cytoplasmic translation
## GO:0030198 extracellular matrix organization
## GO:0043062 extracellular structure organization
## GO:0045229 external encapsulating structure organization
## GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
## GO:0006520 cellular amino acid metabolic process
## GeneRatio BgRatio pvalue p.adjust qvalue
## GO:0002181 37/523 146/18800 2.819220e-25 1.209445e-21 1.118785e-21
## GO:0030198 25/523 307/18800 1.771552e-06 2.264802e-03 2.095032e-03
## GO:0043062 25/523 308/18800 1.878901e-06 2.264802e-03 2.095032e-03
## GO:0045229 25/523 310/18800 2.111704e-06 2.264802e-03 2.095032e-03
## GO:0007178 27/523 368/18800 4.980591e-06 3.803825e-03 3.518690e-03
## GO:0006520 23/523 285/18800 5.320036e-06 3.803825e-03 3.518690e-03
## geneID
## GO:0002181 EIF3D/EIF3I/RPL10/RPL13A/RPL15/RPL17/RPL18A/RPL21/RPL22/RPL23/RPL23A/RPL27/RPL28/RPL31/RPL34/RPL35A/RPL36/RPL39/RPL4/RPL41/RPL5/RPL6/RPLP1/RPLP2/RPS10/RPS12/RPS13/RPS15A/RPS16/RPS17/RPS19/RPS21/RPS25/RPS27A/RPS29/RPS3/RPS3A
## GO:0030198 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0043062 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0045229 ADAMTSL2/BCL3/CAV1/CAV2/CCDC80/COL13A1/COL15A1/COL1A2/COL4A4/COL5A2/COL5A3/CREB3L1/CTSS/FKBP10/FSCN1/IER3IP1/LOX/LOXL3/MMP25/NTN4/QSOX1/SERPINH1/SMOC2/VIPAS39/ZNF469
## GO:0007178 ACVR2B/ADAMTSL2/BMP6/CAV1/CAV2/COL1A2/CREBBP/DAB2/DACT2/DKK3/DUSP15/FST/GDF6/HIVEP1/INHBE/ITGA3/LOX/LRRC32/LTBP1/MYOCD/NOTCH2/NUMA1/RGMB/TF/THBS1/VEPH1/VIM
## GO:0006520 AASS/ASL/ASNS/ATF4/CARS1/CPS1/CSAD/EARS2/EPRS1/GARS1/GCSH/GGT1/GPT2/MTHFS/PHGDH/PSAT1/PYCR1/SARS1/SHMT2/TARS1/TPH1/WARS1/YARS1
## Count
## GO:0002181 37
## GO:0030198 25
## GO:0043062 25
## GO:0045229 25
## GO:0007178 27
## GO:0006520 23dotplot(ego,showCategory=20,font.size=10)
subset <- ego[ego$Count > 37, asis=T]
cnetplot(subset,foldChange=geneList)## Scale for size is already present.
## Adding another scale for size, which will replace the existing scale.
### Enrichment plots I will show you can example of a pathway enriched
in our lung samples, and a pathway that is enriched in Control (i.e
negative NES score)
filtered_pathway <- subset(fgsea, NES > 2.2)
filt_p <- as.vector(filtered_pathway$pathway)
for (i in filt_p){
plt <- plotEnrichment(pathway = pathway[[i]],
gseaParam = 1, ticksSize = 0.5, stats= rank) +
labs(title=i) + theme(plot.title = element_text(hjust = 0.5, face="bold"))
print(plt)
}
go_ribosome = subset(fgsea, fgsea$pathway=="GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME")
go_ribosome = unlist(go_ribosome$leadingEdge)
subset <- rld[go_ribosome, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME",
labels_row = rownames(subset),
fontsize = 8,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
go_cytosolic = subset(fgsea, fgsea$pathway=="GOCC_CYTOSOLIC_RIBOSOME")
go_cytosolic = unlist(go_cytosolic$leadingEdge)
subset <- rld[go_cytosolic, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "GOCC_CYTOSOLIC_RIBOSOME",
labels_row = rownames(subset),
fontsize = 8,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
go_rs = subset(fgsea, fgsea$pathway=="GOCC_RIBOSOMAL_SUBUNIT")
go_rs = unlist(go_rs$leadingEdge)
subset <- rld[go_rs, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "GOCC_RIBOSOMAL_SUBUNIT",
labels_row = rownames(subset),
fontsize = 8,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
go_large = subset(fgsea, fgsea$pathway=="GOCC_CYTOSOLIC_LARGE_RIBOSOMAL_SUBUNIT")
go_large = unlist(go_large$leadingEdge)
subset <- rld[go_large, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "GOCC_CYTOSOLIC_LARGE_RIBOSOMAL_SUBUNIT",
labels_row = rownames(subset),
fontsize = 8,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
KEGG
# read in gmt file
pathway_kegg <- gmtPathways("/Users/aungphyo/Downloads/c2.cp.kegg.v2023.1.Hs.symbols.gmt.txt")
head(pathway, 1)## $GOBP_MITOCHONDRIAL_GENOME_MAINTENANCE
## [1] "AKT3" "PPARGC1A" "POLG2" "PARP1" "DNA2" "TYMP"
## [7] "FLCN" "PRIMPOL" "ENDOG" "STOX1" "SLC25A4" "LIG3"
## [13] "MEF2A" "MPV17" "OPA1" "RRM2B" "POLG" "SLC25A36"
## [19] "TWNK" "RRM1" "METTL4" "SSBP1" "TOP3A" "TP53"
## [25] "TEFM" "PIF1" "SESN2" "SLC25A33" "DNAJA3" "MGME1"
## [31] "LONP1"## convert result object to dataframe
res <- as.data.frame(res1)
res$hgnc_symbol <- rownames(res)
# compute summary stat
fgsea_rank <- res %>%
dplyr::select(hgnc_symbol, log2FoldChange) %>%
na.omit() %>%
distinct() %>%
group_by(hgnc_symbol) %>%
summarize(log2foldchange=mean(log2FoldChange))
fgsea_rank## # A tibble: 15,155 × 2
## hgnc_symbol log2foldchange
## <chr> <dbl>
## 1 "" 0.0141
## 2 "A1BG" 0.719
## 3 "A2M" 1.59
## 4 "A2ML1" -0.910
## 5 "A4GALT" 0.443
## 6 "A4GNT" -0.402
## 7 "AAAS" -0.280
## 8 "AACS" 0.0695
## 9 "AADAT" -0.266
## 10 "AAGAB" -0.154
## # ℹ 15,145 more rowscreate named list
rank <- deframe(fgsea_rank)
head(rank, 20)## A1BG A2M A2ML1 A4GALT A4GNT
## 0.014087068 0.718600147 1.592700274 -0.910159189 0.442862910 -0.402305792
## AAAS AACS AADAT AAGAB AAK1 AAMDC
## -0.279714445 0.069463615 -0.266159896 -0.154482210 0.051835381 -0.230911248
## AAMP AAR2 AARD AARS1 AARS2 AARSD1
## -0.071482423 0.007990664 0.363183582 0.172054823 -0.191294438 0.056334904
## AARSD1P1 AASDH
## -0.683100316 -0.333853174# run fgsea
fgsea_kegg <- fgsea(pathways=pathway_kegg, stats=rank, nperm=1000)
fgseaResTidy_kegg <- fgsea_kegg %>%
as_tibble() %>%
arrange(desc(NES))
# Show in a nice table:
fgseaResTidy_kegg %>%
dplyr::select(-leadingEdge, -ES, -nMoreExtreme) %>%
arrange(padj) %>%
DT::datatable()Cluster Profiler of KEGG Analysis
df <- as.data.frame(res1)
df$hgnc_symbol <- rownames(df)
info <- getBM(attributes=c("hgnc_symbol",
"entrezgene_id"),
filters = c("hgnc_symbol"),
values = df$hgnc_symbol,
mart = mart,
useCache=FALSE)
tmp <- merge(df, info, by="hgnc_symbol")
# subset the dataframe to include only stat sig genes
tmp <- tmp[tmp$padj < 0.05,]OrgDb <- org.Hs.eg.db
geneList <- as.vector(tmp$log2FoldChange)
names(geneList) <- as.character(tmp$entrezgene_id)
gene <- na.omit(as.character(tmp$entrezgene_id))
gene_list<-sort(geneList,decreasing = TRUE)
gene_list## <NA> 3948 2153 72 54810 1600 283455
## 5.9990806 4.8391252 4.8308307 4.6036743 4.3833337 4.3505547 4.1368247
## 6943 1591 7018 844 9568 5744 80852
## 4.0881800 3.8573657 3.4383972 3.1520566 3.0034441 2.8139301 2.7512704
## 4916 5452 116372 6364 9966 58189 404203
## 2.7251132 2.6959852 2.6867731 2.6832810 2.6382404 2.6374986 2.6216537
## 28954 285704 28231 23551 64073 3783 1501
## 2.4045053 2.3883410 2.3717831 2.3112493 2.2876690 2.2349084 2.2095304
## 147710 9890 1305 79853 388389 84935 7348
## 2.1661995 2.0784983 2.0566064 1.9858191 1.9717071 1.9650028 1.9627714
## 54674 50509 388564 57528 395 60676 90865
## 1.9531670 1.9520585 1.9330428 1.9232097 1.9170618 1.8867005 1.8837162
## 79674 5054 1286 5742 56479 93649 4854
## 1.8732255 1.8422295 1.8259636 1.8204117 1.8112526 1.8093297 1.7584928
## 131578 2615 10468 11343 151176 83729 1674
## 1.7503877 1.7245100 1.7100903 1.7078746 1.6592760 1.6331223 1.5834795
## 392255 627 79924 4052 3755 8673 8622
## 1.5652703 1.5403571 1.5311342 1.5289080 1.5124280 1.5010004 1.4891273
## 2863 6275 115572 3679 4148 83648 1846
## 1.4855582 1.4511888 1.4426809 1.4186228 1.3961069 1.3794222 1.3572825
## 6876 7057 3855 10797 79094 1827 79191
## 1.3557396 1.3521409 1.3332079 1.3321153 1.3306835 1.3304792 1.3262320
## 29968 6274 3159 6376 220441 130733 8614
## 1.2982145 1.2974408 1.2969612 1.2938769 1.2874907 1.2865181 1.2847861
## 80380 647024 7378 10123 90993 6558 6273
## 1.2727212 1.2629737 1.2604234 1.2583844 1.2450303 1.2409666 1.2267989
## 6769 9368 3316 1306 857 4071 152078
## 1.2048379 1.2022941 1.1986717 1.1934095 1.1799799 1.1731462 1.1542847
## 55816 1520 6623 54566 133 59277 654
## 1.1462736 1.1431643 1.1427867 1.1398093 1.1170564 1.1141553 1.1068088
## 10736 3678 57158 2678 3675 5831 3786
## 1.0796422 1.0719653 1.0628939 1.0607129 1.0526332 1.0410489 1.0390018
## 136 4883 6536 1373 10398 1278 57165
## 1.0323230 1.0311954 1.0302610 1.0243011 1.0182376 1.0048934 1.0041745
## 54873 57537 79642 1978 78999 22885 231
## 0.9911470 0.9753442 0.9727438 0.9723579 0.9688848 0.9660068 0.9647871
## 29091 9162 24147 2791 1291 27122 84959
## 0.9640390 0.9638590 0.9554133 0.9527258 0.9510155 0.9471440 0.9162178
## <NA> 2697 390 139735 25924 10105 56477
## 0.9136354 0.9008859 0.8999890 0.8896944 0.8874941 0.8849159 0.8834922
## 7436 4907 1292 3778 63910 182 84141
## 0.8829584 0.8809127 0.8776455 0.8747913 0.8706255 0.8573307 0.8414677
## 6541 26227 4232 25945 440 282969 8838
## 0.8405952 0.8393116 0.8340153 0.8229885 0.8226905 0.8199856 0.8167693
## 7431 26472 388341 10103 23125 116039 677
## 0.8080779 0.8024771 0.7824441 0.7752349 0.7708792 0.7666722 0.7545555
## 29103 5935 64208 3856 9351 1969 637
## 0.7522512 0.7512207 0.7476549 0.7420698 0.7406768 0.7369487 0.7354226
## 163882 23406 4015 406 1601 80824 871
## 0.7305432 0.7214576 0.7159667 0.7142696 0.7134975 0.7087994 0.7040407
## 9645 219 22800 26018 2653 293 5606
## 0.6908682 0.6887332 0.6885296 0.6830201 0.6758377 0.6753723 0.6712973
## 6624 2582 10588 84695 84627 23528 960
## 0.6701593 0.6665052 0.6643786 0.6632471 0.6607646 0.6575048 0.6574138
## 79572 435 2617 5768 6217 6189 1933
## 0.6573074 0.6557820 0.6493738 0.6472640 0.6385452 0.6349812 0.6274411
## 694 3269 23521 4830 6301 7453 468
## 0.6180525 0.6140041 0.6123539 0.6084470 0.6052044 0.6050158 0.6047035
## 113 1290 6472 595 706 253558 6146
## 0.6018967 0.6005504 0.5978094 0.5945835 0.5927784 0.5834032 0.5831215
## 25934 858 6139 6142 84706 125228 388335
## 0.5776390 0.5722809 0.5676076 0.5645222 0.5615070 0.5607065 0.5566329
## 29095 7494 23480 833 6223 54475 29078
## 0.5565256 0.5560836 0.5534511 0.5533330 0.5489510 0.5405964 0.5377568
## 6134 64951 27 83442 7205 8565 6164
## 0.5361010 0.5356669 0.5308443 0.5301278 0.5293318 0.5282196 0.5216564
## 58526 6218 382 824 6230 6206 6233
## 0.5192400 0.5172269 0.5135786 0.5117422 0.5116005 0.5112982 0.5106991
## 11072 124454 6155 115253422 1317 6160 147807
## 0.5088738 0.5087339 0.5081182 0.5074136 0.5065566 0.5050175 0.5049784
## 4831 6158 2058 6227 50807 6897 6170
## 0.5033776 0.5028484 0.5010789 0.5002762 0.4988705 0.4969829 0.4959521
## 51491 6207 151887 127687 84266 6188 5687
## 0.4944754 0.4942153 0.4928383 0.4921115 0.4871292 0.4817457 0.4815625
## 965 6747 6138 6147 3068 51650 7386
## 0.4804826 0.4800423 0.4779994 0.4771451 0.4742592 0.4740831 0.4739814
## 5604 10952 153339 1051 6125 4869 10534
## 0.4718005 0.4717828 0.4711257 0.4699143 0.4697131 0.4695452 0.4671565
## 9823 10606 8702 7416 6181 10318 91373
## 0.4636290 0.4623901 0.4604995 0.4544388 0.4537644 0.4520849 0.4519409
## 25873 6165 64841 10092 6124 <NA> 6282
## 0.4511383 0.4507258 0.4500624 0.4497804 0.4492810 0.4475344 0.4457900
## 27090 2014 55850 27230 10109 10096 6210
## 0.4423903 0.4370794 0.4365105 0.4303840 0.4276058 0.4263703 0.4263528
## 5817 3843 8704 440498 7417 64855 10190
## 0.4236231 0.4235462 0.4226962 0.4221881 0.4211369 0.4209262 0.4192133
## 6204 84272 819 11344 9349 6723 6176
## 0.4184142 0.4181543 0.4145492 0.4135685 0.4132647 0.4126677 0.4108770
## 4833 91942 253430 8073 10011 23230 6144
## 0.4101485 0.4084116 0.4071178 0.4058190 0.4023285 0.4000794 0.3994336
## 27249 9521 58505 8664 7178 55974 3692
## 0.3955138 0.3945129 0.3923450 0.3844455 0.3838761 0.3812423 0.3791845
## 85014 6921 399474 689 80723 57222 3987
## 0.3779027 0.3776680 0.3760292 0.3741041 0.3730009 0.3712284 0.3712221
## 80273 6235 10897 25824 328 51596 121260
## 0.3676912 0.3674792 0.3664072 0.3642784 0.3638819 0.3633012 0.3596576
## 51124 7922 23478 5605 55738 6171 25912
## 0.3551235 0.3526072 0.3517826 0.3517291 0.3513908 0.3483566 0.3463156
## 10456 90488 5861 6277 51000 2098 92856
## 0.3431797 0.3428554 0.3423840 0.3379700 0.3352798 0.3267289 0.3264935
## 81502 6128 6396 10073 401505 112950 10342
## 0.3242108 0.3229389 0.3221840 0.3164005 0.3146760 0.3136147 0.3041811
## 1211 5250 60681 10969 11222 51126 6742
## 0.3027023 0.3014930 0.3003342 0.2985143 0.2962976 0.2957507 0.2955526
## 4580 3945 26286 25932 8668 9784 529
## 0.2953467 0.2858638 0.2692620 0.2685089 0.2680159 0.2447227 0.2264251
## 10169 2309 89910 124565 138050 23054 6882
## 0.2213340 -0.2652486 -0.2722057 -0.2793570 -0.2992165 -0.3007988 -0.3013801
## 5094 4853 54926 51164 5306 9968 114823
## -0.3018065 -0.3022949 -0.3025846 -0.3125329 -0.3341490 -0.3393597 -0.3447586
## 4926 83444 116983 9725 8658 5089 4775
## -0.3460292 -0.3514382 -0.3519958 -0.3598544 -0.3630307 -0.3640318 -0.3666931
## 9400 254170 4363 10847 10724 51455 83452
## -0.3673675 -0.3678365 -0.3693336 -0.3781948 -0.3827054 -0.3834749 -0.3883673
## 56890 4215 23013 353274 7581 63894 6667
## -0.3917037 -0.3962489 -0.3971835 -0.4055505 -0.4061049 -0.4076250 -0.4118484
## 196528 84859 85378 22933 29945 9924 6596
## -0.4130175 -0.4165666 -0.4284094 -0.4302804 -0.4304158 -0.4329260 -0.4357097
## 23248 23373 83439 726 23360 4097 8567
## -0.4443361 -0.4542946 -0.4634331 -0.4645712 -0.4671011 -0.4676136 -0.4685938
## 51101 5335 92335 25939 1742 1387 63897
## -0.4710759 -0.4732678 -0.4757252 -0.4758353 -0.4794101 -0.4920385 -0.4972637
## 80216 114294 9895 9666 56478 79888 10983
## -0.5001572 -0.5019308 -0.5055756 -0.5061314 -0.5100293 -0.5122638 -0.5143462
## 57728 10057 4485 94104 65981 10734 11159
## -0.5158883 -0.5162509 -0.5198185 -0.5231291 -0.5292703 -0.5303745 -0.5350070
## 388561 110116772 253769 9869 55251 10157 9910
## -0.5396942 -0.5396942 -0.5486173 -0.5536475 -0.5537661 -0.5628747 -0.5644353
## 51478 124930 10505 10903 602 57787 51380
## -0.5646741 -0.5657397 -0.5847750 -0.5849069 -0.5887023 -0.5888948 -0.5924415
## 84196 80169 26013 26505 3709 10826 5430
## -0.5929685 -0.5945525 -0.5955909 -0.5958162 -0.6048728 -0.6069587 -0.6122977
## 149473 6584 7978 90557 2946 51619 1850
## -0.6130030 -0.6234863 -0.6247553 -0.6326105 -0.6366192 -0.6371385 -0.6491946
## 81579 93 51466 7216 1773 29062 1060
## -0.6496034 -0.6894378 -0.6911027 -0.6923172 -0.6991826 -0.7048263 -0.7065498
## 79641 57139 2053 4675 79661 7096 55212
## -0.7209915 -0.7276277 -0.7324336 -0.7347357 -0.7507736 -0.7599331 -0.7614663
## 113791 5783 57132 3226 644596 2948 147011
## -0.7676101 -0.7676138 -0.7696589 -0.7723281 -0.7725267 -0.7877316 -0.7891759
## 51720 57573 4825 140809 3304 339327 130502
## -0.7900730 -0.8084620 -0.8219925 -0.8258752 -0.8345497 -0.8380243 -0.8509338
## 125488 540 54994 4501 92822 51310 150864
## -0.8551855 -0.8671951 -0.8768327 -0.8927087 -0.9041705 -0.9177565 -0.9257127
## 84107 <NA> 352954 3200 3096 65009 3177
## -0.9260560 -0.9501185 -0.9501185 -0.9548997 -0.9655094 -0.9830631 -0.9898861
## 57644 2065 100506127 56242 100128071 <NA> 91409
## -0.9964134 -1.0192245 -1.0195967 -1.0523470 -1.0707909 -1.0735329 -1.0820329
## 10500 22925 83886 3795 79847 57544 148398
## -1.1036972 -1.1361660 -1.1497207 -1.1514364 -1.1834140 -1.2054697 -1.2311958
## 85446 85376 <NA> 64386 147906 3232 23037
## -1.2436965 -1.2448560 -1.2646739 -1.2871765 -1.3062235 -1.3159062 -1.3244448
## 7545 54413 151056 54823 143686 8740 126823
## -1.3345297 -1.3348326 -1.3351727 -1.3386597 -1.3570519 -1.3610166 -1.4465646
## 79973 3909 89832 29933 400793 10699 441027
## -1.4726195 -1.4754036 -1.4883563 -1.5012319 -1.6086867 -1.6099486 -1.6628589
## <NA> 7166 128853 197350 <NA> 218 148808
## -1.7309557 -1.7424852 -1.8194608 -1.8495002 -1.8583970 -2.0232103 -2.0447663
## 144347 100533183 64094 4185 8913 23426 1748
## -2.1477883 -2.1477883 -2.1483571 -2.1632724 -2.2623748 -2.2794574 -2.2851363
## 9719 10900 84894 92749 158800 104797536 50614
## -2.3175251 -2.3977234 -2.4757136 -2.5678181 -2.9984971 -2.9984971 -3.1270574
## 168002 <NA> 100528020
## -3.4348333 -6.0284891 -7.8876450#gene_ids <- bitr(tmp, fromType = tmp$hgnc_symbol, toType =tmp$entrezgene_id, OrgDb = org.Hs.eg.db)
# GO over-representation test
ego_kegg <- clusterProfiler::enrichKEGG(gene= gene, organism = 'hsa',
keyType = "kegg",
pvalueCutoff = 0.05,
qvalueCutoff = 0.01)## Reading KEGG annotation online: "https://rest.kegg.jp/link/hsa/pathway"...## Reading KEGG annotation online: "https://rest.kegg.jp/list/pathway/hsa"...summary(ego_kegg)## Warning in summary(ego_kegg): summary method to convert the object to
## data.frame is deprecated, please use as.data.frame instead.## ID Description GeneRatio BgRatio
## hsa03010 hsa03010 Ribosome 36/301 167/8466
## hsa05171 hsa05171 Coronavirus disease - COVID-19 36/301 232/8466
## hsa04350 hsa04350 TGF-beta signaling pathway 13/301 108/8466
## pvalue p.adjust qvalue
## hsa03010 6.577954e-19 1.907607e-16 1.731040e-16
## hsa05171 3.908697e-14 5.667611e-12 5.143023e-12
## hsa04350 1.106582e-04 1.069696e-02 9.706863e-03
## geneID
## hsa03010 11222/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## hsa05171 5335/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## hsa04350 93/654/1387/2014/10468/392255/83729/2615/4052/285704/6667/7018/7057
## Count
## hsa03010 36
## hsa05171 36
## hsa04350 13head(summary(ego_kegg))## Warning in summary(ego_kegg): summary method to convert the object to
## data.frame is deprecated, please use as.data.frame instead.## ID Description GeneRatio BgRatio
## hsa03010 hsa03010 Ribosome 36/301 167/8466
## hsa05171 hsa05171 Coronavirus disease - COVID-19 36/301 232/8466
## hsa04350 hsa04350 TGF-beta signaling pathway 13/301 108/8466
## pvalue p.adjust qvalue
## hsa03010 6.577954e-19 1.907607e-16 1.731040e-16
## hsa05171 3.908697e-14 5.667611e-12 5.143023e-12
## hsa04350 1.106582e-04 1.069696e-02 9.706863e-03
## geneID
## hsa03010 11222/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## hsa05171 5335/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## hsa04350 93/654/1387/2014/10468/392255/83729/2615/4052/285704/6667/7018/7057
## Count
## hsa03010 36
## hsa05171 36
## hsa04350 13browseKEGG(ego,'hsa03010')hsa03010 <- pathview(gene.data = gene_list,
pathway.id = "hsa03010",
species = "hsa",
limit = list(gene=max(abs(gene_list)), cpd=1))## Info: Downloading xml files for hsa03010, 1/1 pathways..## Info: Downloading png files for hsa03010, 1/1 pathways..## 'select()' returned 1:1 mapping between keys and columns## Info: Working in directory /Users/aungphyo/Desktop/June Project## Info: Writing image file hsa03010.pathview.pnghsa03010## $plot.data.gene
## kegg.names labels all.mapped type x y width height mol.data
## 7 2197 FAU gene 1006 712 46 17 NA
## 8 6137 RPL13 gene 486 669 46 17 NA
## 9 6158 RPL28 6158 gene 642 757 46 17 0.5028484
## 10 6208 RPS14 gene 640 377 46 17 NA
## 11 6228 RPS23 gene 534 461 46 17 NA
## 12 6222 RPS18 gene 594 377 46 17 NA
## 13 6235 RPS29 6235 gene 664 293 46 17 0.3674792
## 14 6207 RPS13 6207 gene 563 555 46 17 0.4942153
## 15 6205 RPS11 gene 434 293 46 17 NA
## 16 6209 RPS15 gene 710 218 46 17 NA
## 17 6194 RPS6 gene 486 712 46 17 NA
## 18 6202 RPS8 gene 538 712 46 17 NA
## 19 6218 RPS17 6218 gene 590 712 46 17 0.5172269
## 20 6223 RPS19 6223 gene 642 712 46 17 0.5489510
## 21 6229 RPS24 gene 694 712 46 17 NA
## 22 6232 RPS27 gene 850 712 46 17 NA
## 23 6233 RPS27A 6233 gene 902 712 46 17 0.5106991
## 24 6201 RPS7 gene 434 801 46 17 NA
## 25 6204 RPS10 6204 gene 486 801 46 17 0.4184142
## 26 6206 RPS12 6206 gene 538 801 46 17 0.5112982
## 27 6227 RPS21 6227 gene 590 801 46 17 0.5002762
## 28 6230 RPS25 6230 gene 746 712 46 17 0.5116005
## 29 6231 RPS26 gene 798 712 46 17 NA
## 30 6234 RPS28 gene 954 712 46 17 NA
## 31 6191 RPS4X gene 572 293 46 17 NA
## 32 6189 RPS3A 6189 gene 434 712 46 17 0.6349812
## 34 100008589 RNA28SN5 gene 514 105 46 17 NA
## 36 100169751 RNA5S1 gene 560 105 46 17 NA
## 37 124995 MRPL10 gene 814 452 46 17 NA
## 38 65003 MRPL11 gene 906 452 46 17 NA
## 39 6122 RPL3 gene 526 218 46 17 NA
## 40 6135 RPL11 gene 618 293 46 17 NA
## 41 6133 RPL9 gene 756 293 46 17 NA
## 42 6175 RPLP0 gene 814 469 46 17 NA
## 43 6136 RPL12 gene 906 469 46 17 NA
## 44 23521 RPL13A 23521 gene 855 377 46 17 0.6123539
## 45 28998 MRPL13 gene 855 360 46 17 NA
## 46 100008587 RNA5-8SN5 gene 606 105 46 17 NA
## 47 51069 MRPL2 gene 664 201 46 17 NA
## 48 11222 MRPL3 11222 gene 526 201 46 17 0.2962976
## 51 4736 RPL10A gene 860 469 46 17 NA
## 52 6132 RPL8 gene 664 218 46 17 NA
## 53 64928 MRPL14 gene 480 276 46 17 NA
## 54 9349 RPL23 9349 gene 480 293 46 17 0.4132647
## 55 6157 RPL27A gene 1032 293 46 17 NA
## 56 29088 MRPL15 gene 1032 276 46 17 NA
## 57 6125 RPL5 6125 gene 894 293 46 17 0.4697131
## 58 29074 MRPL18 gene 894 276 46 17 NA
## 59 6139 RPL17 6139 gene 756 218 46 17 0.5676076
## 60 29093 MRPL22 gene 756 201 46 17 NA
## 61 6147 RPL23A 6147 gene 618 218 46 17 0.4771451
## 62 6150 MRPL23 gene 618 201 46 17 NA
## 63 6154 RPL26 gene 526 293 46 17 NA
## 64 79590 MRPL24 gene 526 276 46 17 NA
## 65 11224 RPL35 gene 894 218 46 17 NA
## 67 51263 MRPL30 gene 986 276 46 17 NA
## 68 6129 RPL7 gene 986 293 46 17 NA
## 69 6138 RPL15 6138 gene 538 669 46 17 0.4779994
## 70 6141 RPL18 gene 763 377 46 17 NA
## 71 6143 RPL19 gene 848 293 46 17 NA
## 72 6144 RPL21 6144 gene 590 669 46 17 0.3994336
## 73 6152 RPL24 gene 642 669 46 17 NA
## 74 6156 RPL30 gene 580 461 46 17 NA
## 75 6170 RPL39 6170 gene 902 669 46 17 0.4959521
## 76 7311 UBA52 gene 954 669 46 17 NA
## 77 6171 RPL41 6171 gene 1006 669 46 17 0.3483566
## 78 6166 RPL36AL gene 1058 669 46 17 NA
## 79 6160 RPL31 6160 gene 694 669 46 17 0.5050175
## 80 6161 RPL32 gene 802 293 46 17 NA
## 81 6164 RPL34 6164 gene 434 377 46 17 0.5216564
## 82 6165 RPL35A 6165 gene 746 669 46 17 0.4507258
## 83 6167 RPL37 gene 798 669 46 17 NA
## 84 6168 RPL37A gene 850 669 46 17 NA
## 85 6128 RPL6 6128 gene 434 757 46 17 0.3229389
## 86 6142 RPL18A 6142 gene 486 757 46 17 0.5645222
## 87 6146 RPL22 6146 gene 538 757 46 17 0.5831215
## 88 6155 RPL27 6155 gene 590 757 46 17 0.5081182
## 89 6159 RPL29 gene 694 757 46 17 NA
## 90 25873 RPL36 25873 gene 746 757 46 17 0.4511383
## 91 6169 RPL38 gene 798 757 46 17 NA
## 92 6124 RPL4 6124 gene 572 218 46 17 0.4492810
## 93 6130 RPL7A gene 631 461 46 17 NA
## 94 6134 RPL10 6134 gene 434 669 46 17 0.5361010
## 95 9045 RPL14 gene 480 377 46 17 NA
## 96 51073 MRPL4 gene 572 201 46 17 NA
## 97 65005 MRPL9 gene 981 538 46 17 NA
## 98 6182 MRPL12 gene 722 452 46 17 NA
## 100 6176 RPLP1 6176,6181 gene 768 469 46 17 0.8646414
## 101 54948 MRPL16 gene 848 201 46 17 NA
## 102 63875 MRPL17 gene 809 360 46 17 NA
## 103 9801 MRPL19 gene 758 610 46 17 NA
## 104 55052 MRPL20 gene 703 538 46 17 NA
## 105 219927 MRPL21 gene 548 610 46 17 NA
## 107 51264 MRPL27 gene 594 610 46 17 NA
## 108 10573 MRPL28 gene 434 610 46 17 NA
## 110 64983 MRPL32 gene 913 538 46 17 NA
## 111 9553 MRPL33 gene 480 610 46 17 NA
## 112 64981 MRPL34 gene 749 538 46 17 NA
## 113 51318 MRPL35 gene 657 538 46 17 NA
## 114 64979 MRPL36 gene 548 360 46 17 NA
## 116 100008588 RNA18SN5 gene 664 105 46 17 NA
## 119 64969 MRPS5 gene 940 276 46 17 NA
## 120 51081 MRPS7 gene 488 444 46 17 NA
## 122 64965 MRPS9 gene 901 360 46 17 NA
## 123 55173 MRPS10 gene 480 201 46 17 NA
## 124 6187 RPS2 gene 940 293 46 17 NA
## 125 6193 RPS5 gene 488 461 46 17 NA
## 126 6210 RPS15A 6210 gene 710 293 46 17 0.4263528
## 127 6217 RPS16 6217 gene 901 377 46 17 0.6385452
## 128 6224 RPS20 gene 480 218 46 17 NA
## 129 3921 RPSA gene 434 555 46 17 NA
## 130 6188 RPS3 6188 gene 802 218 46 17 0.4817457
## 131 64963 MRPS11 gene 640 360 46 17 NA
## 132 6183 MRPS12 gene 534 444 46 17 NA
## 134 63931 MRPS14 gene 664 276 46 17 NA
## 135 64960 MRPS15 gene 563 538 46 17 NA
## 136 51373 MRPS17 gene 434 276 46 17 NA
## 139 64968 MRPS6 gene 1073 538 46 17 NA
## 140 51021 MRPS16 gene 712 610 46 17 NA
## 141 51023 MRPS18C gene 1027 538 46 17 NA
## 143 54460 MRPS21 gene 948 610 46 17 NA
## 144 6203 RPS9 gene 686 377 46 17 NA
## 145 51116 MRPS2 gene 434 538 46 17 NA
## 147 65008 MRPL1 gene 860 452 46 17 NA
## mol.col
## 7 #FFFFFF
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## 9 #BEBEBE
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## 44 #BEBEBE
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## 51 #FFFFFF
## 52 #FFFFFF
## 53 #FFFFFF
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## 63 #FFFFFF
## 64 #FFFFFF
## 65 #FFFFFF
## 67 #FFFFFF
## 68 #FFFFFF
## 69 #BEBEBE
## 70 #FFFFFF
## 71 #FFFFFF
## 72 #BEBEBE
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## 74 #FFFFFF
## 75 #BEBEBE
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## 81 #BEBEBE
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## 97 #FFFFFF
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## 100 #BEBEBE
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## 128 #FFFFFF
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## 140 #FFFFFF
## 141 #FFFFFF
## 143 #FFFFFF
## 144 #FFFFFF
## 145 #FFFFFF
## 147 #FFFFFF
##
## $plot.data.cpd
## NULLdotplot(ego_kegg,x="GeneRatio",showCategory=20,font.size=6)
#dotplot(egoKEGG,x="GeneRatio",showCategory=20,font.size=6)#subset <- ego[ego$Count>=5, asis=T]
#cnetplot(ego, foldChange=geneList)filtered_pathway <- subset(fgsea_kegg, NES > 2.3)
filt_p <- as.vector(filtered_pathway$pathway)
for (i in filt_p){
plt <- plotEnrichment(pathway = pathway_kegg[[i]],
gseaParam = 1, ticksSize = 0.5, stats= rank) +
labs(title=i) + theme(plot.title = element_text(hjust = 0.5, face="bold"))
print(plt)
}
kegg_ribosome = subset(fgsea_kegg, fgsea_kegg$pathway=="KEGG_RIBOSOME")
kegg_ribosome= unlist(kegg_ribosome$leadingEdge)
subset <- rld[kegg_ribosome, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "KEGG_RIBOSOME",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
###Reactome
# read in gmt file
pathway_reactome <- gmtPathways("/Users/aungphyo/Downloads/c2.cp.reactome.v2023.1.Hs.symbols.gmt.txt")
head(pathway_reactome, 1)## $REACTOME_INTERLEUKIN_6_SIGNALING
## [1] "JAK2" "TYK2" "CBL" "STAT1" "IL6ST" "IL6" "IL6R" "JAK1"
## [9] "STAT3" "PTPN11" "SOCS3"## convert result object to dataframe
res <- as.data.frame(res1)
res$hgnc_symbol <- rownames(res)
# compute summary stat
fgsea_rank <- res %>%
dplyr::select(hgnc_symbol, log2FoldChange) %>%
na.omit() %>%
distinct() %>%
group_by(hgnc_symbol) %>%
summarize(log2foldchange=mean(log2FoldChange))
fgsea_rank## # A tibble: 15,155 × 2
## hgnc_symbol log2foldchange
## <chr> <dbl>
## 1 "" 0.0141
## 2 "A1BG" 0.719
## 3 "A2M" 1.59
## 4 "A2ML1" -0.910
## 5 "A4GALT" 0.443
## 6 "A4GNT" -0.402
## 7 "AAAS" -0.280
## 8 "AACS" 0.0695
## 9 "AADAT" -0.266
## 10 "AAGAB" -0.154
## # ℹ 15,145 more rowsrank <- deframe(fgsea_rank)
head(rank, 20)## A1BG A2M A2ML1 A4GALT A4GNT
## 0.014087068 0.718600147 1.592700274 -0.910159189 0.442862910 -0.402305792
## AAAS AACS AADAT AAGAB AAK1 AAMDC
## -0.279714445 0.069463615 -0.266159896 -0.154482210 0.051835381 -0.230911248
## AAMP AAR2 AARD AARS1 AARS2 AARSD1
## -0.071482423 0.007990664 0.363183582 0.172054823 -0.191294438 0.056334904
## AARSD1P1 AASDH
## -0.683100316 -0.333853174# run fgsea
fgsea_reactome <- fgsea(pathways=pathway_reactome, stats=rank, nperm=1000)
fgseaResTidy_reactome <- fgsea_reactome %>%
as_tibble() %>%
arrange(desc(NES))
# Show in a nice table:
fgseaResTidy_reactome %>%
dplyr::select(-leadingEdge, -ES, -nMoreExtreme) %>%
arrange(padj) %>%
DT::datatable()Cluster Profiler of Reactome
df <- as.data.frame(res1)
df$hgnc_symbol <- rownames(df)
info <- getBM(attributes=c("hgnc_symbol",
"entrezgene_id"),
filters = c("hgnc_symbol"),
values = df$hgnc_symbol,
mart = mart,
useCache=FALSE)
tmp <- merge(df, info, by="hgnc_symbol")
# subset the dataframe to include only stat sig genes
tmp <- tmp[tmp$padj < 0.05,]OrgDb <- org.Hs.eg.db
geneList <- as.vector(tmp$log2FoldChange)
names(geneList) <- as.character(tmp$entrezgene_id)
gene <- na.omit(as.character(tmp$entrezgene_id))
gene_list<-sort(geneList,decreasing = TRUE)
#gene_ids <- bitr(tmp, fromType = tmp$hgnc_symbol, toType =tmp$entrezgene_id, OrgDb = org.Hs.eg.db)
# Reactome over-representation test
ego <- enrichPathway(gene= gene, organism = 'human',
pvalueCutoff = 0.05,
qvalueCutoff = 0.01)
summary(ego)## Warning in summary(ego): summary method to convert the object to data.frame is
## deprecated, please use as.data.frame instead.## ID
## R-HSA-9633012 R-HSA-9633012
## R-HSA-1799339 R-HSA-1799339
## R-HSA-156842 R-HSA-156842
## R-HSA-2408557 R-HSA-2408557
## R-HSA-72689 R-HSA-72689
## R-HSA-156902 R-HSA-156902
## R-HSA-192823 R-HSA-192823
## R-HSA-72764 R-HSA-72764
## R-HSA-975956 R-HSA-975956
## R-HSA-2408522 R-HSA-2408522
## R-HSA-156827 R-HSA-156827
## R-HSA-72613 R-HSA-72613
## R-HSA-72737 R-HSA-72737
## R-HSA-72706 R-HSA-72706
## R-HSA-72766 R-HSA-72766
## R-HSA-168255 R-HSA-168255
## R-HSA-168273 R-HSA-168273
## R-HSA-9711097 R-HSA-9711097
## R-HSA-927802 R-HSA-927802
## R-HSA-975957 R-HSA-975957
## R-HSA-9010553 R-HSA-9010553
## R-HSA-6791226 R-HSA-6791226
## R-HSA-8868773 R-HSA-8868773
## R-HSA-376176 R-HSA-376176
## R-HSA-71291 R-HSA-71291
## R-HSA-72312 R-HSA-72312
## R-HSA-72662 R-HSA-72662
## R-HSA-72695 R-HSA-72695
## R-HSA-72649 R-HSA-72649
## R-HSA-72702 R-HSA-72702
## R-HSA-9754678 R-HSA-9754678
## R-HSA-379716 R-HSA-379716
## R-HSA-2022090 R-HSA-2022090
## R-HSA-379724 R-HSA-379724
## R-HSA-1474290 R-HSA-1474290
## R-HSA-216083 R-HSA-216083
## R-HSA-1474244 R-HSA-1474244
## R-HSA-8948216 R-HSA-8948216
## R-HSA-9705683 R-HSA-9705683
## R-HSA-3000178 R-HSA-3000178
## R-HSA-1474228 R-HSA-1474228
## R-HSA-1650814 R-HSA-1650814
## Description
## R-HSA-9633012 Response of EIF2AK4 (GCN2) to amino acid deficiency
## R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane
## R-HSA-156842 Eukaryotic Translation Elongation
## R-HSA-2408557 Selenocysteine synthesis
## R-HSA-72689 Formation of a pool of free 40S subunits
## R-HSA-156902 Peptide chain elongation
## R-HSA-192823 Viral mRNA Translation
## R-HSA-72764 Eukaryotic Translation Termination
## R-HSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
## R-HSA-2408522 Selenoamino acid metabolism
## R-HSA-156827 L13a-mediated translational silencing of Ceruloplasmin expression
## R-HSA-72613 Eukaryotic Translation Initiation
## R-HSA-72737 Cap-dependent Translation Initiation
## R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
## R-HSA-72766 Translation
## R-HSA-168255 Influenza Infection
## R-HSA-168273 Influenza Viral RNA Transcription and Replication
## R-HSA-9711097 Cellular response to starvation
## R-HSA-927802 Nonsense-Mediated Decay (NMD)
## R-HSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
## R-HSA-9010553 Regulation of expression of SLITs and ROBOs
## R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
## R-HSA-8868773 rRNA processing in the nucleus and cytosol
## R-HSA-376176 Signaling by ROBO receptors
## R-HSA-71291 Metabolism of amino acids and derivatives
## R-HSA-72312 rRNA processing
## R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
## R-HSA-72695 Formation of the ternary complex, and subsequently, the 43S complex
## R-HSA-72649 Translation initiation complex formation
## R-HSA-72702 Ribosomal scanning and start codon recognition
## R-HSA-9754678 SARS-CoV-2 modulates host translation machinery
## R-HSA-379716 Cytosolic tRNA aminoacylation
## R-HSA-2022090 Assembly of collagen fibrils and other multimeric structures
## R-HSA-379724 tRNA Aminoacylation
## R-HSA-1474290 Collagen formation
## R-HSA-216083 Integrin cell surface interactions
## R-HSA-1474244 Extracellular matrix organization
## R-HSA-8948216 Collagen chain trimerization
## R-HSA-9705683 SARS-CoV-2-host interactions
## R-HSA-3000178 ECM proteoglycans
## R-HSA-1474228 Degradation of the extracellular matrix
## R-HSA-1650814 Collagen biosynthesis and modifying enzymes
## GeneRatio BgRatio pvalue p.adjust qvalue
## R-HSA-9633012 38/369 101/10891 2.760192e-30 2.994809e-27 2.885128e-27
## R-HSA-1799339 39/369 112/10891 1.488490e-29 8.016339e-27 7.722750e-27
## R-HSA-156842 36/369 93/10891 2.955332e-29 8.016339e-27 7.722750e-27
## R-HSA-2408557 36/369 93/10891 2.955332e-29 8.016339e-27 7.722750e-27
## R-HSA-72689 37/369 101/10891 5.175632e-29 1.123112e-26 1.081979e-26
## R-HSA-156902 35/369 89/10891 9.458304e-29 1.466037e-26 1.412345e-26
## R-HSA-192823 35/369 89/10891 9.458304e-29 1.466037e-26 1.412345e-26
## R-HSA-72764 35/369 93/10891 5.761915e-28 7.814597e-26 7.528397e-26
## R-HSA-975956 35/369 95/10891 1.367528e-27 1.648631e-25 1.588252e-25
## R-HSA-2408522 38/369 118/10891 2.269674e-27 2.462596e-25 2.372406e-25
## R-HSA-156827 37/369 111/10891 2.740432e-27 2.699836e-25 2.600958e-25
## R-HSA-72613 38/369 119/10891 3.234827e-27 2.699836e-25 2.600958e-25
## R-HSA-72737 38/369 119/10891 3.234827e-27 2.699836e-25 2.600958e-25
## R-HSA-72706 37/369 112/10891 3.969888e-27 3.076663e-25 2.963984e-25
## R-HSA-72766 55/369 291/10891 2.627093e-26 1.900264e-24 1.830669e-24
## R-HSA-168255 41/369 156/10891 1.377456e-25 9.340874e-24 8.998776e-24
## R-HSA-168273 38/369 135/10891 5.789309e-25 3.694941e-23 3.559618e-23
## R-HSA-9711097 40/369 156/10891 1.545333e-24 9.314925e-23 8.973777e-23
## R-HSA-927802 35/369 115/10891 2.445954e-24 1.326930e-22 1.278333e-22
## R-HSA-975957 35/369 115/10891 2.445954e-24 1.326930e-22 1.278333e-22
## R-HSA-9010553 37/369 171/10891 5.152502e-20 2.662126e-18 2.564629e-18
## R-HSA-6791226 37/369 184/10891 7.178956e-19 3.540530e-17 3.410863e-17
## R-HSA-8868773 37/369 194/10891 4.646047e-18 2.191722e-16 2.111453e-16
## R-HSA-376176 39/369 218/10891 5.727730e-18 2.589411e-16 2.494577e-16
## R-HSA-71291 51/369 374/10891 6.764706e-18 2.935882e-16 2.828359e-16
## R-HSA-72312 37/369 204/10891 2.663672e-17 1.111571e-15 1.070861e-15
## R-HSA-72662 16/369 59/10891 6.339606e-11 2.547582e-09 2.454280e-09
## R-HSA-72695 15/369 51/10891 7.043696e-11 2.729432e-09 2.629470e-09
## R-HSA-72649 15/369 58/10891 5.292699e-10 1.914193e-08 1.844088e-08
## R-HSA-72702 15/369 58/10891 5.292699e-10 1.914193e-08 1.844088e-08
## R-HSA-9754678 13/369 50/10891 7.155428e-09 2.504400e-07 2.412679e-07
## R-HSA-379716 8/369 24/10891 7.356826e-07 2.494424e-05 2.403068e-05
## R-HSA-2022090 11/369 61/10891 5.309821e-06 1.745805e-04 1.681867e-04
## R-HSA-379724 9/369 42/10891 8.833079e-06 2.818791e-04 2.715557e-04
## R-HSA-1474290 13/369 90/10891 9.708765e-06 3.009717e-04 2.899490e-04
## R-HSA-216083 12/369 85/10891 2.703460e-05 8.147929e-04 7.849521e-04
## R-HSA-1474244 25/369 300/10891 3.045240e-05 8.929960e-04 8.602911e-04
## R-HSA-8948216 8/369 44/10891 9.792483e-05 2.796012e-03 2.693611e-03
## R-HSA-9705683 18/369 202/10891 1.723219e-04 4.794082e-03 4.618505e-03
## R-HSA-3000178 10/369 76/10891 2.294423e-04 6.223622e-03 5.995689e-03
## R-HSA-1474228 14/369 140/10891 2.779469e-04 7.355423e-03 7.086040e-03
## R-HSA-1650814 9/369 67/10891 4.014995e-04 1.037207e-02 9.992207e-03
## geneID
## R-HSA-9633012 440/468/1051/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-1799339 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/23478/10952/23480/6747
## R-HSA-156842 1933/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-2408557 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6301
## R-HSA-72689 8664/8668/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-156902 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-192823 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72764 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-975956 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-2408522 9521/2058/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6301
## R-HSA-156827 8664/8668/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72613 8664/8668/1978/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72737 8664/8668/1978/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72706 8664/8668/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72766 833/124454/1933/9521/8664/8668/1978/2058/2617/11222/64951/51650/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6301/23478/10952/23480/6747/6897/7453/8565
## R-HSA-168255 1211/3304/3843/5430/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6396/293
## R-HSA-168273 3843/5430/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6396
## R-HSA-9711097 440/468/529/1051/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6396
## R-HSA-927802 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-975957 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-9010553 6921/5687/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-6791226 10969/92856/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-8868773 10969/92856/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-376176 27/6921/51466/5687/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-71291 10157/435/440/1373/51380/9521/2058/2653/84706/26227/29968/5687/5831/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6301/6723/7166
## R-HSA-72312 10969/92856/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72662 8664/8668/1978/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72695 8664/8668/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72649 8664/8668/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-72702 8664/8668/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-9754678 6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-379716 833/9521/2058/2617/6301/6897/7453/8565
## R-HSA-2022090 1306/1278/1286/1290/50509/1291/1292/1520/3909/4015/84695
## R-HSA-379724 833/124454/9521/2058/2617/6301/6897/7453/8565
## R-HSA-1474290 1305/1306/1278/1286/1290/50509/1291/1292/1520/3909/4015/84695/871
## R-HSA-216083 960/1305/1278/1286/1290/50509/1291/1292/3675/3678/3679/7057
## R-HSA-1474244 824/726/960/1305/1306/1278/1286/1290/50509/1291/1292/1520/3675/3678/3679/3909/4015/84695/4052/4148/64386/59277/5054/871/7057
## R-HSA-8948216 1305/1306/1278/1286/1290/50509/1291/1292
## R-HSA-9705683 857/1387/2697/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6396/7096
## R-HSA-3000178 1278/1286/1290/50509/1291/1292/3679/3909/4148/5054
## R-HSA-1474228 824/726/960/1305/1306/1278/1286/1290/50509/1291/1292/1520/3909/64386
## R-HSA-1650814 1305/1306/1278/1286/1290/50509/1291/1292/871
## Count
## R-HSA-9633012 38
## R-HSA-1799339 39
## R-HSA-156842 36
## R-HSA-2408557 36
## R-HSA-72689 37
## R-HSA-156902 35
## R-HSA-192823 35
## R-HSA-72764 35
## R-HSA-975956 35
## R-HSA-2408522 38
## R-HSA-156827 37
## R-HSA-72613 38
## R-HSA-72737 38
## R-HSA-72706 37
## R-HSA-72766 55
## R-HSA-168255 41
## R-HSA-168273 38
## R-HSA-9711097 40
## R-HSA-927802 35
## R-HSA-975957 35
## R-HSA-9010553 37
## R-HSA-6791226 37
## R-HSA-8868773 37
## R-HSA-376176 39
## R-HSA-71291 51
## R-HSA-72312 37
## R-HSA-72662 16
## R-HSA-72695 15
## R-HSA-72649 15
## R-HSA-72702 15
## R-HSA-9754678 13
## R-HSA-379716 8
## R-HSA-2022090 11
## R-HSA-379724 9
## R-HSA-1474290 13
## R-HSA-216083 12
## R-HSA-1474244 25
## R-HSA-8948216 8
## R-HSA-9705683 18
## R-HSA-3000178 10
## R-HSA-1474228 14
## R-HSA-1650814 9head(summary(ego))## Warning in summary(ego): summary method to convert the object to data.frame is
## deprecated, please use as.data.frame instead.## ID
## R-HSA-9633012 R-HSA-9633012
## R-HSA-1799339 R-HSA-1799339
## R-HSA-156842 R-HSA-156842
## R-HSA-2408557 R-HSA-2408557
## R-HSA-72689 R-HSA-72689
## R-HSA-156902 R-HSA-156902
## Description
## R-HSA-9633012 Response of EIF2AK4 (GCN2) to amino acid deficiency
## R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane
## R-HSA-156842 Eukaryotic Translation Elongation
## R-HSA-2408557 Selenocysteine synthesis
## R-HSA-72689 Formation of a pool of free 40S subunits
## R-HSA-156902 Peptide chain elongation
## GeneRatio BgRatio pvalue p.adjust qvalue
## R-HSA-9633012 38/369 101/10891 2.760192e-30 2.994809e-27 2.885128e-27
## R-HSA-1799339 39/369 112/10891 1.488490e-29 8.016339e-27 7.722750e-27
## R-HSA-156842 36/369 93/10891 2.955332e-29 8.016339e-27 7.722750e-27
## R-HSA-2408557 36/369 93/10891 2.955332e-29 8.016339e-27 7.722750e-27
## R-HSA-72689 37/369 101/10891 5.175632e-29 1.123112e-26 1.081979e-26
## R-HSA-156902 35/369 89/10891 9.458304e-29 1.466037e-26 1.412345e-26
## geneID
## R-HSA-9633012 440/468/1051/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-1799339 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/23478/10952/23480/6747
## R-HSA-156842 1933/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-2408557 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189/6301
## R-HSA-72689 8664/8668/6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## R-HSA-156902 6134/23521/6138/6139/6142/6144/6146/9349/6147/6155/6158/6160/6164/6165/25873/6170/6124/6171/6125/6128/6176/6181/6204/6206/6207/6210/6217/6218/6223/6227/6230/6233/6235/6188/6189
## Count
## R-HSA-9633012 38
## R-HSA-1799339 39
## R-HSA-156842 36
## R-HSA-2408557 36
## R-HSA-72689 37
## R-HSA-156902 35dotplot(ego,x="GeneRatio",showCategory=20,font.size=6)
#dotplot(ego_reactome,x="GeneRatio",showCategory=20,font.size=6)Enrichment plot
filtered_pathway <- subset(fgsea_reactome, NES > 2.3)
filt_p <- as.vector(filtered_pathway$pathway)
for (i in filt_p){
plt <- plotEnrichment(pathway = pathway_reactome[[i]],
gseaParam = 1, ticksSize = 0.5, stats= rank) +
labs(title=i) + theme(plot.title = element_text(hjust = 0.5, face="bold"))
print(plt)
}
reactome_eukaryotic = subset(fgsea_reactome, fgsea_reactome$pathway=="REACTOME_EUKARYOTIC_TRANSLATION_ELONGATION")
reactome_eukaryotic= unlist(reactome_eukaryotic$leadingEdge)
subset <- rld[reactome_eukaryotic, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "REACTOME_EUKARYOTIC_TRANSLATION_ELONGATION",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
reactome_srp = subset(fgsea_reactome, fgsea_reactome$pathway=="REACTOME_SRP_DEPENDENT_COTRANSLATIONAL_PROTEIN_TARGETING_TO_MEMBRANE")
reactome_srp= unlist(reactome_srp$leadingEdge)
subset <- rld[reactome_srp, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "REACTOME_SRP_DEPENDENT_COTRANSLATIONAL_PROTEIN_TARGETING_TO_MEMBRANE",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
reactome_GCN2 = subset(fgsea_reactome, fgsea_reactome$pathway=="REACTOME_RESPONSE_OF_EIF2AK4_GCN2_TO_AMINO_ACID_DEFICIENCY")
reactome_GCN2= unlist(reactome_GCN2$leadingEdge)
subset <- rld[reactome_GCN2, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "REACTOME_RESPONSE_OF_EIF2AK4_GCN2_TO_AMINO_ACID_DEFICIENCY",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
reactome_init = subset(fgsea_reactome, fgsea_reactome$pathway=="REACTOME_EUKARYOTIC_TRANSLATION_INITIATION")
reactome_init= unlist(reactome_init$leadingEdge)
subset <- rld[reactome_init, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "REACTOME_EUKARYOTIC_TRANSLATION_INITIATION",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))
reactome_amino = subset(fgsea_reactome, fgsea_reactome$pathway=="REACTOME_SELENOAMINO_ACID_METABOLISM")
reactome_amino= unlist(reactome_amino$leadingEdge)
subset <- rld[reactome_amino, 10:15]
# scale and center the values
mat <- as.matrix(scale(t(subset), center = T))
# basic plot to check we're plotting something sensible
#pheatmap(t(mat))
# spruce it up a bit..
ann <- data.frame(Condition = c(rep("Healthy_cytokine", 3), rep("Healthy_treatment", 3)))
rownames(ann) <- rownames(mat)
col <- c( "blue","forestgreen")
names(col) <- c("Healthy_treatment","Healthy_cytokine")
ann_col <- list(Condition = col)
ComplexHeatmap::pheatmap(t(mat),
show_rownames = T,
annotation_col = ann,
annotation_colors = ann_col,
main = "REACTOME_SELENOAMINO_ACID_METABOLISM",
labels_row = rownames(subset),
fontsize = 6,
legend = TRUE,
heatmap_legend_param =list(title="z-score",at=c (-1.5,-1,-0.5,0,0.5,1,1.5)),
color=hcl.colors(100, 'PRGn',rev=F))