model10 — Nov 14, 2013, 2:02 PM
install.packages("vegan")
Installing package into 'C:/Users/model10/Documents/R/win-library/3.0'
(as 'lib' is unspecified)
Error: trying to use CRAN without setting a mirror
require(vegan)
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.0-9
env <- read.csv("rs_env_plot 2.csv")
dom <- read.csv("sp.dom 2.csv")
all <-read.csv("sp.abun2 2.csv")
dom <- metaMDS(dom)
Square root transformation
Wisconsin double standardization
Run 0 stress 0.05758
Run 1 stress 0.01325
... New best solution
... procrustes: rmse 0.1026 max resid 0.24
Run 2 stress 0.01529
Run 3 stress 0.01331
... procrustes: rmse 0.00592 max resid 0.01743
Run 4 stress 0.01529
Run 5 stress 0.01331
... procrustes: rmse 0.01407 max resid 0.04248
Run 6 stress 0.01529
Run 7 stress 0.01338
... procrustes: rmse 0.01871 max resid 0.05681
Run 8 stress 0.01325
... New best solution
... procrustes: rmse 0.0001941 max resid 0.0004813
*** Solution reached
plot(dom, type="t")
stressplot(dom)
all <- metaMDS(all)
Square root transformation
Wisconsin double standardization
Run 0 stress 0.139
Run 1 stress 0.1288
... New best solution
... procrustes: rmse 0.09361 max resid 0.1969
Run 2 stress 0.1516
Run 3 stress 0.1321
Run 4 stress 0.139
Run 5 stress 0.139
Run 6 stress 0.1309
Run 7 stress 0.139
Run 8 stress 0.1312
Run 9 stress 0.1288
... procrustes: rmse 0.0001563 max resid 0.00036
*** Solution reached
plot(all, type="t")
stressplot(all)
