MAESTRÍA EN BIOLOGÍA COMPUTACIONAL

Caracterización molecular de los virus del síndrome respiratorio y reproductivo porcino (PRRSV) aislados en Ecuador entre 2017 y 2018

Introducción
El síndrome respiratorio y reproductivo porcino (PRRS) es la enfermedad en cerdos más importante a nivel mundial desde su aparición en los años ochenta, y es endémica en muchos países (Nelsen et al., 1999). La enfermedad se caracteriza por producir abortos y lechones nacidos débiles, aumento de la mortalidad en lechones lactantes y destetados, y enfermedad respiratoria en lechones destetados y de engorde (Rossow et al., 1994; Terpstra et al., 1991). Esta enfermedad es causada por el virus PRRS (PRRSV), el mismo que también agrava infecciones como la Influenza A, Streptococcus suis y las ocasionadas por coronavirus respiratorio porcino (Nelsen et al., 1999). El virus PRRS pertenece a la familia Arteriviridae dentro del orden Nidovirales y contiene un genoma de ARN monocatenario de sentido positivo que varía de 14,9 a 15,5 Kb de longitud (Conzelmann et al., 1993). PRRSV se divide en dos genotipos, PRRSV-1 y PRRSV-2 (Meng et al., 1995). Ambos tipos comparten solo alrededor del 50-60% lo que ocasiona una variabilidad de secuencia considerable dentro de cada tipo (Allende et al., 1999; Forsberg, 2005). Ambos subtipos tienen una distribución mundial (Gao et al., 2004).

Objetivo general
Investigar los virus PRRS circulantes en Ecuador en 2017 y 2018 mediante técnicas moleculares.

Objetivos específicos

1.- Tipificar los virus PRRS circulantes en Ecuador en 2017 y 2018 mediante la secuenciación del gen ORF5.

2.- Comparar las secuencias obtenidas con secuencias originarias de otros países latinoamericanos y disponibles en GenBank para investigar la relación genética.

Metodología

Muestras
Se utilizarán 9 muestras proporcionadas por La Agencia de Regulación y Control Fito y Zoosanitario (AGROCALIDAD), las mismas proceden de las provincias de Santo Domingo de los Tsáchilas, El Oro, Manabí y Guayas y se recolectaron entre los años 2017 y 2018.

Secuenciación viral
Se seleccionarán muestras positivas y con alta concentración de ARN (valor de umbral de ciclo de rtRT-PCR bajo) para la secuenciación de ORF5. El gen ORF5 codifica para una proteína de membrana estructural, tiene una alta tasa de sustitución genética y se usa comúnmente para realizar investigaciones epidemiológicas (Alvarez et al., 2016). Para la secuenciación de nucleótidos de ARN, el ORF5 se amplificó utilizando una mezcla de cebadores, como describieron Chang et al. (2002).

Análisis filogenético
Se analizarán las secuencias ORF5 de virus recolectados en Ecuador durante los años 2017 y 2018. Además, se recuperarán secuencias virales de referencia genéticamente diversas de PRRSV de diferentes ubicaciones geográficas (América del Norte, América del Sur, Asia y Europa) de GenBank para comparar y reconstruir la filogenia de los virus ecuatorianos secuenciados. Todas las secuencias se alinearán usando MUSCLE (Edgar, 2004). La filogenia se reconstruirá utilizando métodos de árbol de muestreo de análisis evolutivo bayesiano implementados en el software BEAST v.1.8.2 (Drummond & Rambaut, 2007). El modelo de partición y sustitución de codones se seleccionará utilizando Partitionfinder (Lanfear et al., 2012). El análisis se realizará utilizando el reloj exponencial relajado no correlacionado y el árbol de población del horizonte bayesiano coalescente.
La convergencia y la mezcla de las cadenas se evaluarán utilizando Tracer. Se anotará el árbol final de máxima credibilidad del clado (MCC) y se tomarán muestras de los árboles antes de quemar la convergencia. Los análisis filogenéticos bayesianos se realizarán utilizando los recursos computacionales disponibles en CIPRES. Las distancias genéticas de las secuencias de nucleótidos se calcularán utilizando la sustitución de parámetros de Kimura-2 utilizando MEGA v5.2.2 (Tamura et al., 2007).

Resultados

Casos de PRRSV distribuidos en Santo Domingo de Tsáchilas, Manabí y El Oro

Código R utilizado

# Se cargan las librerías
library(Biostrings)
library(seqinr)
library(phangorn)
library(msa)
library(ape)
library(ggtree)


# Se establece el directorio de trabajo
setwd("D:/MAESTRIA_BIOLOGIA_COMPUTACIONAL/TITULACION")

# Se cargan los archivos con las secuencias de Ecuador (FASTA)
prrsv_ecu <- read.fasta(file = "PRRSV_ALL.fasta")
prokDNA <- readDNAStringSet("PRRSV_ALL.fasta")

# Se cargan los archivos con las secuencias más similares encontradas al realizar el BLAST
#choosebank("genbank")
#v1_eeuu <- query("PRRSV1","AC=MF326990")
#annots1 <- getAnnot(v1_eeuu$req[[1]])
#annots1[1:20]

#v2_eeuu <- query("PRRSV2","AC=MZ423533")
#annots2 <- getAnnot(v2_eeuu$req[[1]])
#annots2[1:20]


# Del mismo modo
# Del mismo modo, se puede alinear las secuencias de ADN. En este caso se puede emplear la función msa que proporciona una serie de funciones para el análisis de alineamiento múltiple de secuencias biológicas (Multiple Sequence Alignment)

prokAligned <- msa(prokDNA)

## use default substitution matrix

# A continuación se puede ver la alineación de secuencias por diferentes métodos
print(prokAligned, show="complete")

## 
## MsaDNAMultipleAlignment with 12 rows and 15156 columns
##      aln (1..53)                                           names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] -------ATGACGTATAGGTGTTGGCTCTATGCCACGACATTTGTATTGTCAG MF326990
## [10] -------------------------------------------------TCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTGCTTTCATGACGTATAGGTGTTGGCTCTATGCCACGGCATTTGTATTGTCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (54..106)                                         names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAGCTGTGACCACTGGCACAGCCCAAAGCTTGCTGCACAGAAACACCCTTCTG MF326990
## [10] GAGCTGTGACCACTGGCACAGCCCAAAGCTTGCTGCACAGAAACACCCTTCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGAGCTGTGACCACTGGCACAGCCCAAACTTGCTGCACAGAAACACCCTTCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (107..159)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGACGGCCTCCTTCAGGGAGTTTAGGGGTTGTCCCTAGCACCTTGCTTCTGGA MF326990
## [10] TGACGGCCTCCTTCAGGGAGTTTAGGGGTTGTCCCTAGCACCTTGCTTCTGGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGACAGCCTCCTTCAAGGAGTTTAGGGGCTGTCCCTAGCACCTTGTTTCTGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (160..212)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTTGCACTGCTTTACGGTCTCTCCACCCCTTTAACCATGTCTGGGATTCTTGA MF326990
## [10] GTTGCACTGCTTTACGGTCTCTCCACCCCTTTAACCATGTCTGGGATTCTTGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTTGCACTGCTTTACGGTCTCTCCACCCCTTTAACCATGTCTGGGATTCTTGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (213..265)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCGGTGCACGTGCACCCCCAATGCCAGGGTGTTTATGGCAGAGGGCCAAGTCT MF326990
## [10] TCGGTGCACGTGCACCCCCAATGCCAGGGTGTTTATGGCAGAGGGCCAAGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCGGTGCACGTGCACCCCCAATGCCAGGGTGTTTATGGCAGAGGGCCAAGTCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (266..318)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACTGCACACGATGTCTCAGTGCACGGTCCCTCCTCCCCTTGAACCTCCAAGCC MF326990
## [10] ACTGCACACGATGTCTCAGTGCACGGTCCCTCCTCCCCTTGAACCTCCAAGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTGCACGCGATGTCTCAGTGCACGGTCCCTCCTCCCCTTGAACCTCCAAGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (319..371)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTGAGCTTGGAGTGTTGGGCTTGTTTTATAGGCCTGAAGAGCCACTCCGGTG MF326990
## [10] CCTGAGCTTGGGGTGTTGGGCTTGTTTTATAGGCCTGAAGAGCCACTCCGGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCTGAGCTTGGAGTGCTGGGCCTGTTTTACAGGCCTGAAGAGCCACTCCGGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (372..424)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGTTGCCACGCGCATTCCCCACTGTTGAGTGCTCCCCAGCTGGGGCTTGTT MF326990
## [10] GACGTTGCCATGCGCATTCCCCACTGTTGAGTGCTCCCCAGCTGGGGCTTGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACGTTGCCACGCGCATTCCCCACTGTTGAGTGCTCCCCTGCTGGGGCTTGTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (425..477)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGCTTTCCGCAATTTTCCCAATTGCACGAATGACCAGTGGAAACCTGAACTTC MF326990
## [10] GGCTTTCCGCAATTTTCCCAATTGCACGAATGACCAGTGGAAACCTGAACTTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGCTTTCTGCAATTTTCCCTATTGCACGAATGACCAGTGGAAACCTGAACTTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (478..530)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAGCAAAGGATGGTACGGGTTGCCGCTGAGATTTACAGAGCCGGCCAACTCAC MF326990
## [10] CAGCAAAGGATGGTACGGGTTGCCGCTGAGATTTACAGAGCCGGCCAACTCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGCAAAGGTTGGTACGGGTTGCCGCTGAGATTTACAGAGCCGGCCAACTCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (531..583)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCCACAGCTCTGAAGAACTTGCAAGTCTATGAACGGGGTTGCCGTTGGTACC MF326990
## [10] CCCCACAGTTCTGAAGAACTTGCAAGTCTATGAACGGGGTTGCCGTTGGTACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCCGCAGTCCTGAAGAACTTGCAAGTCTATGAACGGGGTTGCCGCTGGTACC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (584..636)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCATCGTTGGACCAGTTCCTGGAGTTTGCGTTTACGCCAACTCCCTACATGTG MF326990
## [10] CCATCGTTGGACCAGTTCCTGGAGTTTGCGTTTACGCCAACTCCCTACATGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCATCGTAGGACCAGTTCCTGGAGTGGGCGTTTACGCAAACTCCTTACATGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (637..689)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGTGACAAACCTTTCCCAGGTGCTACTCACGTGCTGACCAACCTGCCGCTCCC MF326990
## [10] AGTGACAAACCTTTCCCAGGTGCTACTCACGTGCTGACCAACCTGCCGCTCCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGCGACAGACCTTTCCCAGGAGCAACTCACGTGCTGACCAACTTGCCGCTCCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (690..742)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCAGAGACCTAAACCTGAAGATTTTTGCCCCTTTGAGTGTGCTATGGCTGCCG MF326990
## [10] GCAGAGACCTAAACCTGAAGATTTTTGCCCCTTTGAGTGTGCCATGGCTGCCG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCAGAAACCCAAGCCTGAAGATTTTTGCCCCTTTGAGTGTGCCATGGCTGCYG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (743..795)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCTATGACATCGGTCATGACGCCGTCATGTTTGTGGCCGAGGGGAGGGTCTCC MF326990
## [10] TCTATGACATCGGTCATGATGCCGTCATGTTCGTGGCCGAGGGGAGAGTCTCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCTATGACATCGGTCATGATGCCATTATGTTCGTGGCCGAGGGGAGAGTCTCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (796..848)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGGCTCCGCGTGGCGGGGACAAAGGAAGGTTTGAAATTATTCCCGAGGGGCT MF326990
## [10] TGGGCTCCGCGTGGTGGGGATAAAGGAAGGTTTGAAATTGTTCCCGAGGGGCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGGCTCCACGTGGTGGGGATAAAGGAAGGTTTGAAATTGTTCCCGAGGGGCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (849..901)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AAGGTTGATTGCGGAGCAACTTTATACCTCCTTCCCGCCCCACCACATGGTGG MF326990
## [10] AAGGTTGATTGCAGAGCAACTCCATACCTCCTTCCCGCCCCACCACATGGTGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AAGGTTGATTGCAGAGCAACTCCATGCCTCCTTTCCGCCCCACCACATGGTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (902..954)                                        names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATATGTCGGAATTTACCTTCATGGCCCCTGAGTGTGGAACCTCCATGCGGGTT MF326990
## [10] ACATGTCGGAATTTGCCTTCGTGGCCCCTGAGTGTGGAGCCTCCATGCGGGTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACGTGTCGGAATTTGCCTTCGTGRCCCCTGAGTGTGGAGCCTCCATGCGGGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (955..1007)                                       names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAGCGCCAGTATGGCTGCCTCCCCGCCGGCACTGTCCCTGACGGCAACTGCTG MF326990
## [10] GAGCGCCAGTATGGCTGCCTCCCCGCTGACACTGTCCCTGACGGCAATTGCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAGCGCCAGTATGGCTGCCTCCCCGCTGACACTGTCCCTGAAGGCAATTGCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1008..1060)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGGAGCTTGTTTAGCTTACTCCCATTGGAAGTTCAGTACAAAGAAATTCGCC MF326990
## [10] GTGGAGCTTGTTTAGCTCGCTCCCATTGAAAGCTCAGTACGAAGAAATTCGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGGAGCTTGTTTAGCTCGCTCCCATGGAAAGTTCAGTACGAAGAAATTCGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1061..1113)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGCTAACCAATTTGGCTATCAGACTAAGCATGGTGTCGCTGGCAAGTACCTG MF326990
## [10] GTGCTAGCCAATTTGGCTATCAGACCAAGCATGGCGTCGCTGGCAAGTACCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGCTAGCCAATTTGGCTATCAGACCAAGCATGGCGTCGCTGGCAAGTACCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1114..1166)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAGCGAAGGATGCAAGCTAATGGACTCCGAGCAGTGGCTGACGCGAGTGGACC MF326990
## [10] CAGCGAAGGATGCAAGTGAATGGACTCCGGGCAGTGAATGACACGAGTGGACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGCGAAGGATGCAAGTGAATGGACTCCGGGCGGTGACTGACACGAGTGGACC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1167..1219)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATCATTGTACAGTACTTCTGTGTTAAGGAAAGCTGGATTCGCCATTTAAGAT MF326990
## [10] CATCGTTGTACAGTATTTCTGTGTTAAGGAAAGCTGGATTCGCCACTTGAGAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CATCGTTGTACAGTATTTCTGTGTTAAGGAAAGCTGGATTCGCCACTTGAGGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1220..1272)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGCAGAGGAACCTAGCCTCCCTGGGTTTGAGGACCTCATCAGAATAAGAGTT MF326990
## [10] TGGTAGAGGAACCTAGCCTCCCGGGGTTTGAGGACCTCATCAGAATAAGAGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGCAGAGGAACCTAGCCTCCCGGGGTTTGAGGACCTCATCAGAATAAGAGTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1273..1325)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAACCCAATACGTCACCATTGGTTGGTGAGGGTGAGAAAATCTTCCGGTTCGG MF326990
## [10] GAACCTAATACGTTGCCACTGGTTGGTGAGGATGAGAAAATCTTCCGGTTTGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAACCTAATACGTCGCCACTGGTTGGTGAGGATGAGAAAATCTTCCGGTTTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1326..1378)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CACTCACAAATGGTACGGTGCTGGAAAGAGAGCAAGGAAAGCGCGCTCTGGTG MF326990
## [10] CACTCACAAATGGTACGGTGCTGGAAAGAGAACAAGGAAAGCGCGCTCTGGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CACTCACAAATGGTACGGTGCTGGAAAGAGAACAAGGAAAGCGCGCTCTGGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1379..1431)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGCCACCACAGTTACTCGCCGTGTCTTGCCCGTCCGTGAAACCCAACAAGCC MF326990
## [10] TGGCCACCACCGGCACTCGCCGTGTCTCACCCGTCCGTGAAACCCAACAAGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGGCCACCACCGGCACTCGCCGTGTCTCACCCGTCCGTGAAACCCAACAAGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1432..1484)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AAAGAGCACGAGGACGTCAGTGCTAACAAGGCTGAGCAGCTCGAGCACTATTC MF326990
## [10] AAAGAGCACGAGGATGTCAGTGCTAACAAGGCTGAGCAGCTCGAGCACTATTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AAAGAGCACGAGGACATCAGTGCTAACAAGGCTGAGCAGCTCGAGCACTATTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1485..1537)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCGCCTGCCGACGGGAATTGCGGTTGGCACTGCATTTCCGCCATCATCAACC MF326990
## [10] TCCGCCTGCCGACGGGAATTGCGGTTGGCACTGTATTTCCGCCATCATCAACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCGCCTGCTGACGGGAATTGCGGTTGGCACTGTATTTCCGCCATCATCAACC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1538..1590)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATCTGGTGAATTCCAAACTTGAAACCACCCTTCCCGGGAGGGTAAGACCATTG MF326990
## [10] ATCTGGTGAATTCCAAACTTGAAACCACCCTTCCCGAGAGGGTAAGACCATTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATCTGGTGAATTCCAAACTTGAAACCACCCTTCCCGAGAGGGTAAGACCATCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1591..1643)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GATGATTGGGCTACTGACGAGAATCTTGTGAATGCTATCCAAACCCTCAGGCT MF326990
## [10] GATGATTGGGCTACTGACGAGAATCTTGTGAATGCTATCCAAACCCTCAGGCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GATGATTGGGCTACTGACGAAAATCTTGTGAATGCTATCCAAACCCTCAGGCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1644..1696)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCTGCGTCCTTAGACAGGAACGGTGCTTGTGTTGGTGCCAAGTACGTACTCA MF326990
## [10] CCCTGCGTCCTTAGACAGGAACGGTGCTTGTGTTGGTGCCAAGTACGTACTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCTGTGTCCTTAGACAGGAACGGTGCTTGTGTTGGTGCCAGGTACGTACTCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1697..1749)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGCTAGAAGGCGAGCACTGGACTGTTTCTGTGGCCCCTGGGGTGACCCCTCTT MF326990
## [10] AGCTAGAAGGCGAGCACTGGACTGTTTCTGTGGCCCCTGGGGTGACCCCTCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGTTAGAAGGCGAGCACTGGACTGTTTCTGTGGCCCCTGGGGTGACCCCTCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1750..1802)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTGCTCCCCCTTGAATGTGTTCAGGGTTGCTGCGAGCATAAGAGCGGTCCTGG MF326990
## [10] CTGCTCCCCCTTGAATGTGTTCAGGGTTGCTGCGAGCATAAGAGCGGTCTTGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTGCTCCCCCTTGAATGTGTTCAGGGTTGTTGCGAGCATAAGAGCGGTCTTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1803..1855)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCTTCAGATGTGGTTGAGTTTTCCGGACTCAACCCTACTTGCTCTGACCGAC MF326990
## [10] TCCTTCAGATGTGGTTGAGTTTTCCGGACTCAACCCTACTTGCTCTGACCGAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCTTCAGATGTGGTTGAGTTTTCCGGACTCAACCCTACTTGCTCTGACCGAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1856..1908)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TAGCTGGGGTGATGCACTTGCCTAGTTGTGTCATCCCAGATGCTTTGGCTGAA MF326990
## [10] TAGCTGGGGTGATGCACTTGCCTAGTTGTGTCATCCCAGATGCTTTGGCTGAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TAGCTGGGGTGATGCACTTACCTAGTTGTGTCATCCCAGATGCTTTGGCTGAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1909..1961)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGTCCGGCGATCCCAATTGCCCGGCTTCTCCAATTGCCACCGTGTGGACCAC MF326990
## [10] ATGTCCGGCGATCCCAATTGCCCGGCTTCTCCAATTGCCACTGTGTGGACCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGTCCGGCGATCCCAATTGCCCGGCTTCTCCAATTGCCACTGTGTGGACCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (1962..2014)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCGCAATTTTATGCCCATTACAGAGGAGGAGAGCACCCTGATCAGGTGTGCT MF326990
## [10] CTCGCAATTTTATGCCCATTACAGAGGAGGAGAGCACCCTGATCAGGTGTGCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCGCAATTTTATGCCCATTACAGAGGAGGAGAGCACCCTGATCAGGTGTGCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2015..2067)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGAGGAAAATCATTAGCCTTTGCCAGGTGCTTGAGGAGTGCTGTTGTTCCCAG MF326990
## [10] TGAGGAAAATCATTAGCCTTTGCCAGGTGCTTGAGGAGTGCTGTTGTTCCCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGAGGAAAATCATTAGCCTTTGCCAGGTGCTTGAGGAGTGCTGTTGTTCCCAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2068..2120)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGCAAAACCCACCGGGTCACCCCGGAAGAGGTCGCTGCAAAGATTGACTCGTA MF326990
## [10] AGCAAAACCCACCGGGTCACCCCGGAAGAGGTCGCTGCAAAGATTGACTCGTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGCAAAACCCACCGGGTCACCCCGGAAGAGGTCGCTGCAAAGATTGACTCGTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2121..2173)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTTCGCGGTGCGGCAAACCTTGACGAATGCTTGGCTAGGCTTGAGAAAGCTC MF326990
## [10] CCTTCGCGGTGCGGCAAACCTTGACGAATGCTTGGCTAGGCTTGAGAAAGCTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTTCGCGGTGCGGTAAACCTTGACGAATGCTTGGCCAGGCTTGAGAAAGCTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2174..2226)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCCGCCTAGCGTGATGGACGCCTCATTAAATTGGAATGTTGTGTTCCCCGGA MF326990
## [10] GCCCGCCTAGCGTGATGGACGCCTCATTAAATTGGAATGTTGTGTTCCCTGGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCCGCCTAGCGTGATGGACGCCTCATTAAATTGGAATGTTGTGTTCCCTGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2227..2279)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTTGAGGCGGGAGTTCACCTAACCGAGTTGCCCCCGGCCAACCAGTGTCGCGC MF326990
## [10] GTTGAGGCGGGAGTTCACCTAACCGAGTTGCCCCCGGCCAACCAGTGTCGCGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTTGAGGCGGGAGTTCACCTAACCGAGTTGCCCCCGGCAAACCAGTGTCGCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2280..2332)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCCACTTCTATCGCGACCCAAGGGCTTTTTGAGGACGGCCCGGCCCCATCGC MF326990
## [10] TCCCACTTCTATCGCGACTCAAGGGCTTTTGGAGGACGGCCCGGCCCCATCGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCCACTTCTATCGCGACTCAAGGGCTTTTGGAGGACGGCCCGGCCCCATCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2333..2385)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGCCTCTTACACCGAGGGTTCAGCCTCGAAAAACAAAGTCCGTTAGAAGCTTG MF326990
## [10] CACCTCTTACACCAAGAGTTCAGCCTCGAAAAACAAGGTCCGTTAGAAGCTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CACCTCTTACACCAAGAGTTCAGCCCCGAAAAACAAGGTCGGTTAGAAGCTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2386..2438)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCAGATTGCAAGCCCATCCCTGCTCCGCGCAGGAGAATCAGATCTGACTGTGG MF326990
## [10] CCAGATTGCAAGCCCATCCCTGCTCCGCGCAGGAGAATCAGATCTGACTGTGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCAGATTGCAAGCCCATCCCTGCTCCGCGCAGGAGAATCAGATCTGACTGTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2439..2491)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGGCCCGATTTTGATGGGCGACAATGTTCCTGACGGTCGGGAAGACTTGACTG MF326990
## [10] CGGCCCGATTTTGATGGGCGACAATGTTCCTGACGGTCGGGAAGATTTGACTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGGCCCGATTTTGATGGGCGACAATGTTCCTGACGGTYGGAAAGATTTGACTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2492..2544)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCAGTGGTCCATCTGACCTTCCGACACCATCTAAGTTAATGACACCTCCGAGT MF326990
## [10] TTAGTGGTCCATCTGACCTTCCGACAYCATCTGAGTTAATGACACCTCCGAGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCAGTGGTCCATCCGATCTTCCGACACCATCTGAGTTAATGACACCTCCGAGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2545..2597)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAGCCCATGTTTGTGCCCGCATCGCGACACACCTCTAAGCCGGTGGCATCTCT MF326990
## [10] GAGCCCATGTTTGTGCCCGCATCGCGACACACCTCTAAGCCGGTGGCATCTTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAGCCCATGTTTGTGCCCGCATCGCGACACACCTCCAAGCCGGTGGCATCTTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2598..2650)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAATGGGTTAGCCCCAGTTCCTGTACCGCGCAAAACTGTGCCCCGACAAACGG MF326990
## [10] GAATGGGTTAGCCCCAGTTCCTGTACCGCGCAAAACTGTGTCCCGACAAACGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAATAGGTTAGCCCCAGTTCCCGCACCGCGCAAAACTGTGTCCCGACAAACGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2651..2703)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TACCCTCGAGTGAATCAATTCTTGCGTCCACACAGCGACACAACTTTCAGCAG MF326990
## [10] TACCCTCGAGTGAATCAATTCTTGCGTCCACACAGCGACACGACTTTCAGCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TACCCTCGAGTGAATCAATTCTTGCGTTCATACAGCGACACGACTTGAACGGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2704..2756)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTAAACGGAGCGAATCTGACAGCCACAACGCTGACGTGTCAAGACGAGCCTCT MF326990
## [10] GTGAACGGAGCGAATCTAACAGCCACAACGCTGACGTGTCAAGACGAGCCTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCGAATCTAAC------------------------------------------ ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2757..2809)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGATTTATCTTCACCCTCACTGACCGAATATGAGGCTTCCCCCCTAGGACCAC MF326990
## [10] GGATTTATCTTCATCCTCACTGACCGAATATGAGGCTTCCACCCTAGGACCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ---------------------------------------------AGCCACAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2810..2862)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGCAGAATGTGGACATTCCGGGAACAGGAGAGCAAGAAGCTGAAGAGGTTCTG MF326990
## [10] TGCAGAATGTGGACATTCCGGGGACAGGAGAGCAAGAAGCTGAAGAGGTTCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGCTGACGTGTCAAGACGAGCCACTAGGAGAGCAAGAAGCTGAGGAGGTTCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2863..2915)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGTGGAATCCCGGACATACTGGACGACGCCAACCCTGCATCTGTGTCATCAAG MF326990
## [10] AATGGAATCCCGGACATACTGGACGACGCCAACCCTGCATCTGTGTCATCAAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AATGGAATCCCGGACATACTGGACGACGCCAACCCTGCATCTGTGTCATCAAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2916..2968)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAGCTCCCTGTCAAGTGTCGAGATCACACGCCCAAAGTACTCAGCTCAAGCCA MF326990
## [10] CAGCTCCCTGTCAAGTGTCGAGATTACACGCCCAAAGTACTCAGCTCAAGCCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGCTCCCTGTCAAGCATAGAGATCACGCGCCCAAAGTATTCAGCTCAAGCCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (2969..3021)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTATTGACTCAGGTGGACCCTGTTGTGGGCACCTCCGAGAGGTAAAAGAGAAA MF326990
## [10] TTATTGACTCAGGTGGACCCTGTTGTGGGCACCTCCGAGAGGTAAAAGAGAAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCATTGACACRGGCGGGCCCTGCTGTGGGCACCTCCGAGAGGTAAAAGAGAAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3022..3074)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TACCTCAGCGTGATGCGTGAGGCATGTGATGCGACCAAGCTTGATGACCCTGT MF326990
## [10] TACCTCAGCGTGATGCGTGAGGCATGTGATGCGACCAAGCTTGATGACCCTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TACCTCAATGTGATGCGTGAGGCATGTGATGCGACCAAGCTTAACGATCCTAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3075..3127)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CACACAAGAATGGCTTTCCCGTATGTGGGACAGGGTAGACATGCTAACCTGGC MF326990
## [10] CACACAAGAATGGCTTTCCCGTATGTGGGACAGGGTAGACATGCTAACCTGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CACGCAAGAATGGCTCTCCCGTATGTGGGATAGAGTGGACATGCTAACCTGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3128..3180)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCAACACGTCCATCTTTCAGGCGCCTTTCACTTTGGCTGACAAGTTCAAGCTC MF326990
## [10] GCAACACGTCCATCTTTCAGGCGCCTTTCACTTTGGCTGACAAGTTCAAGCTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCAACACGTCCATTTTTCAGGCGCCCTTCACCTTGGCCGACAAGTTCAAGTCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3181..3233)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCCCGAAGATGATACTCGAAACACCGCCACCCTACCCTTGCGGGTTTGTAAT MF326990
## [10] CTCCCGAAGATGATACTCGAGACACCGCCACCCTACCCTTGCGGGTTCGTAAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCCCGAAGATGATACTCGAAACACCGCCGCCTTACCCTTGTGGGTTTGTGAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3234..3286)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GATGCCACGCACACCTGCACCTTCTGTGGATGCAGAGAGCGACATCACCGTTG MF326990
## [10] GATGCCACGCACACCTGCACCTTCTGTGGATGCAGAGAGCGACATCACCGTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GATGCCCCGCACGCCTGCACCTTCTGTAGGTGCGGAGAGCGACCTCACCGTCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3287..3339)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTTCAGTTGCCACCGAGGATGTTTCGCACATTCTCGGGAAGGTGCGAGGTGTT MF326990
## [10] GTTCAGTTGCCACCGAGGATGTTCCGCACATTCTCGGGAAGGTGCGAGGTGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTCAGTTGCTACTGAAGATGTCCCGTACATTCTCGGGAGGGAACAAGGTGTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3340..3392)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGCGAAACGACCGTCCAAGAATTCTCGGCACCCTCCACGGATGGACCTGCAGA MF326990
## [10] TGCGAAACGACCGCCCAAGAATTCTCGGCACCCTTCACGGATGGACCGGCAGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGCAAAGCGACCGACCAGGGACCCCTAGCACCCTTCGCAGGTGAACTGACAGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3393..3445)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGACCAACCTGTTGAAGAACCCCAAACACAAACTCCTCCCGCAGGTGCAGATG MF326990
## [10] TGACCAACCTGTTGGAGAACCCCAAACACAAACTCCTCCCGCAGGTGCAGATG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGCCAACCTGCTAGAGAACCCCGGACACAAGCGCCTTCCGCATGCACAAGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3446..3498)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCGTCAGCTTAGTTTTGGACTCTGAAGAATCGTCAGAGCTCGCTGACTTGCTG MF326990
## [10] GCGTCGGCTTAGTTTTGGACTCTGAAGAATCGTCAGAGCTCGCTGACTTGCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAGTCGGCTTAGTTCTGGATTCTGGAAGTTCACAGGAACCCGCTGACTTGCCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3499..3551)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTCCAAACGGTACCGACGCTAGTGGAGGGGGACCGCTGCATGCGGTCAAGAA MF326990
## [10] CCTCCAAACGGTACCGACGCTAGTGGRGGGGGACCGTTGCATGCGGTCAAGAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCCCAAACGGTACAGACGCAGGCGGAGGGGGACCGTTATACACGGTCAAGAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3552..3604)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAAGGCTGAGAGATACTTTGACCAGCTGGGCCGACGGGTTTTTGGCATCGTCT MF326990
## [10] GAAGGCTGAGAGATACTTTGACCAGCTGAGCCGACGGGTTTTTGGCATTGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAAGGCTGAGAAGTGCTTTGACCAGTTGAGCCAGCGGGTTTTCGGCATCGTCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3605..3657)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCATCTCCCTGTCTTCTTCGCACGTCTTTTCAGGTCTGACGGTCATTATGCT MF326990
## [10] CCCATCTCCCTGTCTTCTTCGCACGTCTTTTCAGGTCTGACGGTCATTATGCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCATCTCCCTGTCTTTCTTTCACGCCTGTTCAGGCCCGACGGTCATTATTCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3658..3710)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCGGGTGATTGGGGTTTTGCAGCTTTTACTCTATTGTGCCTCTTTCTGTGTTA MF326990
## [10] CCGGGTGATTGGGGTTTTGCAGCTTTCACTCTATTGTGCCTCTTTCTGTGTTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCGGGTGATTGGGGCTTTGCAGCTTTTACTTTATTGTGCCTCTTTCTATGTTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3711..3763)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAGTTACCCGGCTTTCGGCGTGGCTCCCCTATTGGGTGTATTTTCTGGGTCTT MF326990
## [10] CAGTTACCCGGCTTTCGGCGTGGCTCCCCTATTGGGTGTATTTTCTGGGTCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGTTACCCTGCGTTTGGTGCTGCTCCCTTATTGGGTGTATTTTCTGGGTCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3764..3816)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCGGCGCGTCCGCATGGGGGTCTTTGGTTGTTGGTTGGCTTTCGCTGTTGGT MF326990
## [10] CTCGGCGCGTCCGCATGGGGGTCTTTGGTTGTTGGTTGGCTTTCGCTGTTGGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCGGCGCGTCCGCATGGGGGTTTTTGGTTGTTGGTTGGCTTTCGCTGTTAGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3817..3869)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGTTCAAACCTGTGCCCGACCCAGTCGGTACTGCTTGTGAATTTGACTCGCC MF326990
## [10] TTGTTCAAACCTGTGCCCGACCCAGTCGGTACTGCTTGTGAATTTGACTCGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGTTCAAGCCTGCTCCCGACCCAGTCGGTACTGCTTGTGAGTTTGACTCGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3870..3922)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGAGTGTAGAGACATCCTTCATTCTTTTGAGCTTCTGCAACCTTGGGACCCTG MF326990
## [10] AGAGTGTAGAGACATCCTTCATTCTTTTGAGCTTCTGCAACCTTGGGACCCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGAGTGTAGGGACATCCTTCATTCTTTTGAGCTTCTGCAACCTTGGGACCCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3923..3975)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCGCAGCCTTGTGGTGGGCCCCGTCGGTCTCTGTCTTGCCATTCTTGGCAGG MF326990
## [10] TTCGCAGCCTTGTGGTGGGCCCCGTCGGTCTCTGTCTTGCCATTCTTGGCAGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTCGCAGCCTTGTGGTGGGCCCCGTCGGTCTCTGCCTTGCCGTTCTTGGCAGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (3976..4028)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTATTGGGCGGGGCACGCTACGTCTGGTTGCTTTTGCTTAGGCTTGGCATCGT MF326990
## [10] TTATTGGGCGGGGCACGCTACGTCTGGTTGCTTTTGCTTAGGCTTGGCATCGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTACTGGGCGGGGCACGCTACGTCTGGTTGCTTCTGCTTAGGCTTGGCATCCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4029..4081)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCAGACTGTATCTTGGCTGGAGCTTATGTGCTTTCGCAAGGTAGGTGTAAAA MF326990
## [10] TTCAGACTGTATCTTGGCTGGAGCTTATGTGCTTTCGCAAGGTAGGTGTAAAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTCAGACTGTGTCCTGGCTGGAGCCTATGTGCTTTCGCAGGGTAGGTGTAAAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4082..4134)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGTGTTGGGGATCTTGTGTAAGAACTGCCCCCAGTGAGGTCGCCTTCAATGTT MF326990
## [10] AGTGTTGGGGATCTTGTGTAAGAACTGCCCCCAGTGAGGTCGCCTTCAATGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGTGCTGGGGATCTTGTGTAAGAACCGCCCCCAGCGAGGTCGCCTTYAACGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4135..4187)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCCCCTTCACACGCGCAACCAGATCGTCACTTATCGACCTGTGTGATCGGTT MF326990
## [10] TTCCCTTTCACACGCGCAACCAGATCGTCACTTATCGACCTGTGTGATCGGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTTCCCTTCACACGTGCGACCAGGTCATCACTCATCGATTTGTGCAATCGATT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4188..4240)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGTGCGCCCAAGGGCGTGGACCCCATCTTCCTTGCCACTGGATGGCGCGGGT MF326990
## [10] TTGTGCGCCCAAGGGCGTGGACCCCATCTTCCTTGCCACTGGATGGCGCGGGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGTGCACCAAAGGGCATGGACCCTATTTTCCTCGCCACCGGGTGGCGCGGAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4241..4293)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCTGGTCTGGTCAGAGTCCCATTGAGCAACCCACCGAGAAACCTATTGCGTTC MF326990
## [10] GCTGGTCTGGTCAGAGTCCCATTGAGCAACCCACCGAGAAACCTATTGCGTTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTGGACCGGCCAAAGCCCCATTGAGCAATCATCTGAGAAACCCATCGCGTAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4294..4346)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCCAGTTGGACGAGAAGAAAATCACGGCAAGGACTGTGGTTGCCCAACCTTA MF326990
## [10] GCCCAGTTGGACGAGAAGAAAATCACGGCAAGGACTGTGGTTGCCCAACCTTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTCAACTGGATGAAAAGAAAATCACGGCCAGGACTGTGGTCGCCCAGCCTTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4347..4399)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGACCCCAACCAAGCTGTGAAGTGCTTACGAGTTTTGCAGGCGGGTGGGGCGA MF326990
## [10] TGACCCCAACCAAGCTGTGAAGTGCTTACGAGTTTTGCAGGCGGGTGGGGCGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGACCCCAATCAGGCTGTAAAGTGCTTACGGGTTTTGCAGGCTGGTGGGGTAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4400..4452)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGTGGCTGAGGCGGTCCCAAAAGTGGTCAAAGTCTCTGCTGTCCCATTTCGA MF326990
## [10] TGGTGGCTGAGGCGGTCCCAAAAGTGGTCAAAGTCTCTGCTGTCCCATTTCGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGTAGCGGAGGCTGTCCCAAAAGTAACCAAGGTTTCTGTCATTCCATTTCGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4453..4505)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCCCCTTCTTTCCCGCCAGCGTAAAAGTTGATCCTGAATGCAGGGTCGTGGT MF326990
## [10] GCCCCCTTCTTTCCCGCCAGCGTAAAAGTTGATCCTGAATGCAGGGTCGTGGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTCCCTTTTTTCCCACCGGAGTGAAAGTTGACCCCGACTGCAGGATTGTGGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4506..4558)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGACCCAGACACCTTCACAACTGCTCTCCGGTCCGGCTACTCCACCACAAACC MF326990
## [10] AGACCCAGACACCTTCACAACTGCTCTCCGGTCCGGCTACTCCACCACAAACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGACCCTGACACCTTTACGACGGCTCTTCGGTCCGGCTACTCTACCTCAAACC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4559..4611)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCATTCTTGGTGTGGGGGATTTTGCCCAGTTGAATGGGTTAAAAATCAGGCAG MF326990
## [10] TCATTCTTGGTGTGGGGGATTTTGCCCAGTTGAATGGGTTGAAAATCAGGCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCGTCCTTGGTGTTGGGGATTTYGCCCAGCTGAATGGATTGAAAATCAGGCAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4612..4664)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATCTCCAAGTCCTCAGGGGGAGGCCCACACCTCGCAGCTGCCCTGCATGTTGC MF326990
## [10] ATCTCCAAGTCCTCAGGGGGAGGCCCACACCTCGCAGCTGCCCTGCATGTTGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATCTCCAAGCCCTCAGGAGGAGGCCCACATCTCGCAGCTGCCCTACATGTTGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4665..4717)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGCTTGATGGCCCTGCACATGCTTGTCGGAATTTATGTGACCTCGGTGGGCA MF326990
## [10] TTGCTTGATGGCCCTGCACATGCTTGTCGGAATTTATGTGACCTCGGTGGGCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGCTCGATGGCCTTGCACATGCTTGCCGGAATTTATGTGACTTCGGTGGGCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4718..4770)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTGCGGCACTGGCACTAACGACCCGTGGTGCACCAACCCGTTTGCCGTCCCT MF326990
## [10] CCTGCGGCACTGGCACTAACGACCCGTGGTGCACCAACCCGTTTGCCGTCCCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTGCGGCACTGGCACCAACGACCCGTGGTGCACCAACCCGTTTGCCGTCCCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4771..4823)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGTTACGGACCTGGCTCCCTCTGCACGGCTAGGTTGTGCATCTCTCAGCATGG MF326990
## [10] GGTTACGGACCTGGCTCCCTCTGCACGGCTAGGTTGTGCATCTCCCAGCATGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGTTACGGACCTGGCTCTCTCTGCACGTCTAGGTTGTGCATCTCCCAGCATGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4824..4876)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTTACACTACCCTTGACGGCGTTAGTGACCGGTTTCGGCATTCAGGAAATTA MF326990
## [10] CCTCACACTACCCTTGACGGCGTTAGTGACCGGTTTCGGCATTCAGGAAATTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTTACACTACCCCTGACGGCGTTAGTGGCCGGTTTTGGCATTCAGGAAATTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4877..4929)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTTGGTTGTTTTGATCTTTGTTTCCATCGGCGGCTTGGCTCACCGGTTGAGT MF326990
## [10] CCTTGGTTGTTTTGATCTTTGTTTCCATCGGTGGCTTGGCTCACCGGTTGAGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTTGGTTGTCTTGATCTTTGTTTCCATCGGCGGCTTGGCTCACCGGTTGAGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4930..4982)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGCAAGGCCGACGTGTTGTGCGTCCTGCTTGCAATCGTCAGCTATGTCTGGGC MF326990
## [10] TGCAAGGCCGATGTGTTGTGCGTCCTGCTTGCAATCGTCAGCTATGTTTGGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGCAAGGCTGATGTAATGTTTGTTATACTTGCAATTGCCAGCTATGTTTGGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (4983..5035)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCTCTCACTTGGTTGATTTGCGTGTTTCCTTGCTGGTTGCGCTGGTTCTCCT MF326990
## [10] GCCTCTCACTTGGTTGATTTGCGTGTTTCCTTGCTGGTTGCGCTGGTTCTCCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACCTCTTACCTGGTTACTTTGTGTGTTTCCTTGCTGGCTGCGGTGTTTTTCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5036..5088)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGCATCCCCTTACCATTCTATGGTTGGTGTTTTTCTTGATTTCCGTGAACATG MF326990
## [10] TGCATCCCCTTACCATTCTATGGTTGGTGTTTTTCTTGATTTCCGTGAACATG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGCACCCTCTCACTATTTTATGGTTGGTGTTTTTCTTAATCTCTGTAAATATG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5089..5141)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCTCAGGAATCTTGGCTTTAGTGTTGTTGATCTCTCTCTGGCTCCTCGGTCG MF326990
## [10] CCCTCAGGAATCTTGGCTTTAGTGTTGTTGATCTCTCTCTGGCTCCTCGGTCG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTTCGGGAATCTTAGCCCTGGTGTTGTTGGTCTCTCTTTGGCTCCTCGGTCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5142..5194)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTACACCAATGTTGCCGGCCTTATCACCCCTTATGACATTCACCACTACACCA MF326990
## [10] CTACACCAATGTTGCCGGCCTTGTCACCCCTTATGACATTCACCACTACACCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTATACCAATGTTGCCGGTCTTGTCACCCCCTATGACATCCACCATTACACCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5195..5247)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACGGCCCCCGCGGCGTTGCCGCCTTGGCCACAGCTCCTGACGGGACCTATTTG MF326990
## [10] ACGGCCCCCGCGGCGTTGCCGCCTTGGCCACAGCTCCTGACGGGACCTATTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGGTCCCCGCGGTGTTGCTGCCTTGGCYACCGCACCGGACGGAACCTACCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5248..5300)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCAGCTGTCCGCCGCGCTGCGTTGACTGGCCGTACCATGCTGTTTACACCGTC MF326990
## [10] GCAGCTGTTCGCCGCGCTGCGTTGACTGGCCGTACCATGCTGTTTACACCGTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCGCTGTCCGCCGCGCCGCGTTGACAGGTCGTACTATGTTGTTTACCCCGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5301..5353)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCAACTTGGGTCACTCCTTGAGGGCGCCCTTAGAACCCAAAAGCCTTCACTGA MF326990
## [10] TCAACTTGGGTCACTCCTTGAGGGCGCCCTTAGAACCCAAAAGCCTTCACTGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCAGCTCGGGTCCCTCCTTGAGGGTGCTTTTAGGACCCAAAAACCTTCGCTGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5354..5406)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATACCGTCAATGTGGTTGGGTCCTCCATGGGCTCCGGCGGGGTGTTCACTATC MF326990
## [10] ATACCGTCAATGTGGTTGGGTCCTCCATGGGCTCCGGCGGGGTGTTCACTATC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACACCGTCAACGTGGTTGGGTCTTCCATGGGCTCCGGTGGAGTGTTCACCATT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5407..5459)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGGGAAAATCAAATGTGTAACCGCCGCACACATCCTTACGGGCAACTCTGC MF326990
## [10] GACGGGAAAATCAAATGTGTAACCGCCGCACACATCCTTACGGGCAACTCTGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACGGAAAAATCAAGTGCGTAACTGCCGCACATGTCCTCACTGGTAATTCCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5460..5512)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAGGGTCTCTGGGGTTGGTTTCAACCAAATGTTGGATTTTGATGTAAAAGGGG MF326990
## [10] CAGGGTCTCTGGGGTTGGTTTCAACCAAATGTTGGATTTTGATGTAAAAGGGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCGGGTTTCCGGGGTCGGCTTCAACCAAATGCTTGACTTTGACGTAAGGGGAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5513..5565)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATTTTGCCATAGCCGATTGCCCGGGTTGGCAAGGAGTCGCTCCCAAATCCCAG MF326990
## [10] ATTTTGCCATAGCCGATTGCCCGGGTTGGCAAGGAGTCGCTCCCAAATCCCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATTTCGCTATAGCTGATTGCCCGAACTGGCATGGGGCTGCCCCCAAGACCCAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5566..5618)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTTTGCGAGGATGGGTGGACTGGCCGTGCTTATTGGCTGACGTCCTCTGGCGT MF326990
## [10] TTTTGCGAGGAGGGGTGGACTGGCCGTGCTTATTGGCTGACGTCCTCTGGCGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTCTGCACGGATGAATGGACTGGCCGTGCCTATTGGCTAACATCCTCTGGCGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5619..5671)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGAACCCGGTGTCATCGGGAAGGGGTTTGCCTTTTGTTTTACCGCGTGCGGCG MF326990
## [10] CGAACCCGGTGTCATCGGGAAGGGGTTTGCCTTTTGTTTCACCGCGTGCGGCG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGAACCCGGCGTTATTGGAAAAGGGTTCGCCTTCTGCTTCACCGCATGTGGCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5672..5724)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATTCTGGGTCCCCAGTGATCACCGAGGCTGGAGAACTTGTCGGTGTCCACACG MF326990
## [10] ATTCTGGGTCCCCAGTGATCACCGAGGCTGGAGAACTTGTCGGTGTCCACACG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTCCGGGTCCCCAGTGATCACCGAGGCCGGTGAGCTTGTCGGCATTCACACG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5725..5777)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGATCGAATAAACAAGGAGGAGGCATTGTTACGCGCCCTTCAGGCCAGTTTTG MF326990
## [10] GGTTCGAATAAACAAGGAGGAGGCATTGTTACGCGCCCTTCAGGCCAGTTTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGATCGAATAAACAAGGGGGGGGCATTGTTACGCGCCCCTCAGGCCAGCTTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5778..5830)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TAATGTGACACCCACCAAATTAAGTGAATTGAGTGAATTCTTCGCTGGACCCA MF326990
## [10] TAATGTGACACCCACCAAATTAAGTGAATTGAGTGAATTCTTCGCTGGACCCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TAGTGTGGCACCCGTCAAGCTAAGCGAATTAAGTGAATTCTTTGCTGGGCCTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5831..5883)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGGTCCCGCTCGGCGATGTAAAGGTTGGCAACCACATAATTAAAGACACACAC MF326990
## [10] AGGTCCCGCTCGGCGATGTAAAGGTTGGCAACCACATAATTAAAGACACACAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGGTCCCGCTCGGTGATGTGAAGGTCGGCAGCCACATAATTAAAGACATAAGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5884..5936)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAGGTGCCTTCTGATCTTTGTGCCTTGCTTGCTGCCAAACCTGAGCTGGAGGG MF326990
## [10] GAGGTGCCTTCTGATCTTTGTGCCTTGCTTGCTGCCAAACCTGAGCTGGAGGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAGGTGCCTTCAGATCTTTGTGCCTTACTTGCTGCCAAACCTGAACTGGAAGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5937..5989)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGGTCTCTCCACTGTCCAACTTCTGTGTGTGTTTTTTCTCCTGTGGAGAATGA MF326990
## [10] AGGTCTCTCCACTGTCCAACTTCTGTGTGTGTTTTTTCTCCTGTGGAGAATGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGGCCTCTCCACCGTCCAACTTCTTTGTGTGTTTTTTCTCTTGTGGAGAATGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (5990..6042)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGGACATACCTGGACGCCTTTGGTTGCTGTGGTTTTTTTTGTCTTGAATGAG MF326990
## [10] TGGGACATACCTGGACGCCTTTGGTTGCTGTGGTTTTTTTTGTCTTGAATGAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGGACATGCCTGGACGCCCTTGGTTGCTGTGAGTTTCTTTATTTTGAACGAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6043..6095)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATACTCCCAGCTGTCCTGGTCCGGAGTGTCTTCTCCTTTGGCATGTTTGCGTT MF326990
## [10] ATACTCCCAGCTGTCCTGGTCCGGAGTGTCTTCTCCTTTGGCATGTTTGCGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTTCTCCCTGCCGTCCTRGTCCGGAGTGTTTTCTCCTTTGGAATGTTTGTGCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6096..6148)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTCTTGGTTTACACCATGGTCTGCACAAGTTCTGATGATCAGGCTTCTAACAG MF326990
## [10] GTCTTGGTTTACACCATGGTCTGCACAAGTTCTGATGATCAGGCTTCTAACAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATCCTGGCTCACGCCATGGTCTGCGCAAGTTCTAATGATCAGGCTTCTYACAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6149..6201)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTGCTCTTAACAGGAACAGGTCGTCACTCGCTTTCTACGTCCTCGGTGCAGTG MF326990
## [10] CTGCTCTCAACAGGAACAGGTGGTCACTCGCTTTCTACGTCCTCGGTGCAGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGCTCTCAACAGGAACAGATGGTCACTTGCCTTTTTCAGCCTTGGTGCAGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6202..6254)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCGGATTTGTCGCAGATCTTGCGGTGACTCAGGGGCATCCGCTGCAGGCAGT MF326990
## [10] ACCGGATTTGCCGCAGATCTTGCGGTGACTCAGGGGCATCCGCTGCAGGCAGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACCGGTTTTGTCGCAGATYTTGCGACCACTCAGGGGCATCCGTTGCAGACAGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6255..6307)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGAACTTGAGCACCTATGCTTTCCTGCCTCGAATGATGGTTGTTACCTCAC MF326990
## [10] GACGAACTTGAGCACCTATGCTTTCCTGCCTCGAATGATGGTTGTTACCTCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GATGAATTTGAGCACCTATGCATTCCTGCCTCGGATGGTAGTTGTGGCCTCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6308..6360)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGGTTCCATTGCTTGCTTGTGGTGTTGTGCACCTTCTTGCCATAATTTTGTAC MF326990
## [10] CGGTTCCATTGCTTGCTTGTGGCGTTGTGCACCTTCTTGCCATAATTTTGTAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGTCCCAGTGATTGCGTGTGGTGTCGTGCACCTACTTGCCATCATTTTGTAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6361..6413)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTGTTCAAGCACCGTTGCCTGCATTACATCCTTGTTGGCGATGGAGTGTTTTC MF326990
## [10] CTGTTCAAGCACCGTTGCCTGCATTATATCCTTGTTGGCGATGGAGTGTTTTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGTTTAAGTATCGTGGCCTGCACCATCTCCTTGTTGGCGATGGATTGTTCTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6414..6466)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCGCGCCTTTTTCTTGCGGTACTTTGCTGAAGGGAAGTTGAGGGAAGGGGTGT MF326990
## [10] TCGCGCCTTTTTCTTGCGATACTTTGCTGAAGGGAAGTTGAGGGAAGGGGTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGCGGCTTTCTTCTTGAGATACTTTGCCGAGGGAAAGTTGAGGGAAGGGGTGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6467..6519)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGCAGTCCTGCGGAATAAATCACGAGTCACTGACTGGCGCTCTCGCTATGAGA MF326990
## [10] CGCAGTCCTGCGGAATAAATCACGAGTCACTGACTGGCGCTCTCGCTATGAGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGCAATCCTGCGGAATGAATCATGAGTCTCTGACTGGTGCCCTCGCTATGAAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6520..6572)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCGATGACGAAGACCTGGATTTCCTTACAAAACTGACTGATTTTAAGTGCTT MF326990
## [10] CTCGATGACGAAGACCTGGATTTCCTTACAAAACTGACTGATTTTAAGTGCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCAATGACGAGGACTTGGATTTCCTCACAAAATTGACTGATTTTAAGTGCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6573..6625)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGTTTCCGCATCCAACATGAGGAATGCGGCGGGCCAGTTTATCGAGGCTGCTT MF326990
## [10] TGTTTCCGCATCCAACATGAGGAATGCGGCGGGCCAGTTCATCGAGGCTGCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGTTTCCGCTTCCAACATGAGGAATGCAGCGGGCCAGTTCATCGAGGCCGCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6626..6678)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGCCAAAGCACTTAGGGTGGAACTTGCCCAGTTGGTGCAAGTTGACAAGGTT MF326990
## [10] ATGCCAAAGCACTTAGGGTGGAACTTGCCCAGTTGGTGCAGGTTGACAAGGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGCCAAAGCGCTTAGGGTGGAACTTGCTCAGTTAGTGCAGGTTGACAAGGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6679..6731)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGGGGTGTTTTAGCTAAGCTTGAAGCTTTTGCTGATACCGCGACGCCCCAACT MF326990
## [10] CGGGGTGTTTTAGCTAAGCTTGAAGCTTTTGCTGATACCGCGACGCCCCAACT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGTGGTGTCTTAGCCAAGCTTGAAGCATTTGCWGACACTGCGATGCCCCAACT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6732..6784)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCACCTGGCGACATTGTCGTTGCTCTTGGCCACACGCCCGTCGGCAGCATCT MF326990
## [10] CTCACCCGGCGACATTGTCGTTGCTCTTGGCCACACGCCCGTCGGCAGCATCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCACCAGGTGACATTGTTGTTGCTCTTGGCCATACGCCTGTTGGCAGTATCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6785..6837)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGACTTAAAAGTAGGCAGCACCAAGCACACCCTACAAGCCATCGAGACCAGA MF326990
## [10] TTGACTTAAAAGTAGGCAGCACCAAGCACACCCTACAAGCCATCGAGACCAGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGACTTGAAAGTGGGCAGCACCAAGCACACCCTACAAGCCATTGAGACCAGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6838..6890)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTCCTCGCTGGGTCCAGAATGACCGTGGCGCGCGTCGTTGATCCGACTCCCAC MF326990
## [10] GTCCTCGCTGGGTCCAGAATGACCGTGGCGCGCGTCGTTGATCCGACTCCCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTCCTCGCCGGGTCCAGAATGACCGTGGCGCGCGTAGTTGATCCGGCTCCCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6891..6943)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCTCCACCCGTGCCCGTGCCCATTCCTCTCCCGCCGAAAGTTTTAGAGAACG MF326990
## [10] ACCTCCACCCGTGCCCGTGCCCATTCCTCTCCCGCCGAAAGTTTTAGAGAACG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACCTCCACCCGTGCCTGTGCCTATTCCTCTCCCGTCGAAAGTCTTAGAGAACG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6944..6996)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCCCCGTGCCTGGGAGGACGAGGACCGCCTGAACAAAAAAAGGCGGCGCAAA MF326990
## [10] GCCCCCGTGCCTGGGAGGACGAGGACCGCCTGAACAAAAAAAGGCGGCGCAAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCCCCGCGCTTGGGAGGACGAAGACCGTCTGAGCAAAAAGAAGCGGCGCAGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (6997..7049)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGGAGGCCGTTGGCATTTATGTCATGGATGGGAAAAAGTACCAAAAATTTTG MF326990
## [10] ATGGAGGCCGTTGGCATTTATGTCATGGATGGGAAAAAGTACCAAAAATTTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGGAGGCCGTCGGCATTTATGTTATGGACGGAAAAAAGTACCAAAAATTTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7050..7102)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGATAAGAATTCCGGTGATGTGTTCTATGAAGAAGTCCACGACAACACAGACG MF326990
## [10] GGATAAAAATTCCGGTGATGTGTTCTATGAAGAAGTCCACGACAACACAGACG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGATAAGAACTCTGGTGATGTGTTCTATGAGGAAGTCCATGATAATACAGACG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7103..7155)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGTGGGAATGCCTTAGAACCGACGACCCTGCCGACTTGGATCCTGAGAAGGGG MF326990
## [10] CGTGGGAATGCCTTAGAACCGACGACCCAGCCGACTTGGATCCTGAGAAGGGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGTGGGAATGCCTCAGAACTGACGACCCTGCCGACTTTGATCCTGAGAAGGGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7156..7208)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACTTTGTGCGGGCGCCTCACCATAGAGAATAAACCTTACCATGTTTATGCCTC MF326990
## [10] ACTTTGTGCGGGCGCCTCACCATAGAGAGGAAACCTTACCATGTTTATGCCTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTTTGTGTGGGCGCCTCACCATAGAGAATAAACCCTACAATGTTTACACCTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7209..7261)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCTTCCGGTAGGAAGTTTCTTGTCCCTGCCAACCCAGAGAGTGGGAAAGCCC MF326990
## [10] CCCTTCCGGTAGGAAGTTTCTTGTCCCTGCCAACCCAGAGAGTGGGAAAGCCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCTTCCGGTAGGAAGTTCCTGGTCCCTGCCAACCCAGAGAGTGGGAAAGTCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7262..7314)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGTGGGAGGCTGCAAGGCTTTCCATGGAGCAGGCCCTTGGCATGATGAACGTC MF326990
## [10] AGTGGGAAGCTGCAAGGCTTTCCATGGAGCAGGCCCTTGGCATGATGAACGTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGTGGGAAGCTGCAAGGCTTTCCATGGAGCAGGCCCTTGGCATGATGAACGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7315..7367)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGGCGAGTTGACCGCCAAGGAAGTGGAGAAACTGAAGAGAATAATTGACAA MF326990
## [10] GACGGCGAGTTGACCGCCAAGGAAGTGGAGAAACTGAAGAGAATAATTGACAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACGGCGAGTTGACCGCCAAGGAAGTAGAGAAACTGAAAAGAATAATTGACAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7368..7420)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACTCCAGGGCCTGACTAAGGAGCAGTGTTTAAACTGCTAGCCGCCAGCGGCTT MF326990
## [10] ACTCCAGGGCCTGACTAAGGAGCAGTGTTTAAACTGCTAGCCGCCAGCGGCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTCCAGGGCCTGACTAGGGAGCAGTGTTTAAACTACTAGCCGCCAGCGGCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7421..7473)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACCCGCTGTGGCCGCGGCGGCTTGGTTGTTACTGAGACAGCGGTAAAAATAG MF326990
## [10] GACCCGCTGTGGCCGCGGCGGCTTGGTTGTTACTGAGACAGCGGTAAAAATAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACCCGCTGTGGTCGCGGCGGCTTGGTTGTTACTGAGACAGCGGTGAAAATAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7474..7526)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCAGATTTCACAGTCGGACCTTTACCCTGGGGCCTGTGAATTTGAAAGTGGCT MF326990
## [10] TCAGATTTCACAGTCGGACCTTTACCCTGGGGCCTGTGAATTTGAAAGTGGCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCAAATTTCATAACCGGACCTTTACCCTGGGACCTGTGAATTTAAAAGTGGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7527..7579)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGCGAGGTTGAGCTGAAAGACGCCGTCGAGCACAACCAACACCCAATTGCAAG MF326990
## [10] AGCGAGGTTGAGCTGAAAGACGCCGTCGAGCACAACCAACACCCAATTGCAAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGTGAGGTTGAGCTAAAAGACGCGGTCGAGCACAACCAACACCCGGTTGCAAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7580..7632)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCAGTTGACGGTGGCGTTGTGCTCCTGCGCTCTGCAGTTCCTTCGCTTATAG MF326990
## [10] ACCAGTTGACGGTGGCGTTGTGCTCCTGCGCTCTGCAGTTCCTTCGCTTATAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACCGGTTGATGGTGGTGTTGTGCTCCTGCGCTCCGCAGTTCCTTCGCTTGTAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7633..7685)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACGTCCTGATCTCCGGGGCCGACGCATCCCCTCAGTTACTCGCCCGTCATGGG MF326990
## [10] ACGTCCTGATCTCCGGGGCCGACGCATCCCCTCAGTTACTCGCCCGTCATGGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACGTCTTAATCTCTGGCGCTGATGCATCTCCCAAGTTAATCGCCCGCCATGGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7686..7738)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCGGGAAACACCGGGATTGATGGCACGCTCTGGGATTTTGAGTCCGTAGCCAC MF326990
## [10] CCGGGAAACACCGGGATCGATGGCACGCTCTGGGATTTTGAGTCCGTAGCCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCAGGAAATACTGGGATCGATGGCACGCTTTGGGATTTTGAGGCCGAGGCCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7739..7791)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TAAAGAGGAAGTCGCACTCAGTGCGCAGATAATACAGGCTTGTGACATTAGGC MF326990
## [10] TAAAGAGGAAGTCGCACTCAGTGCACAGATAATACAGGCTTGTGACATTAGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAAAGAGGAAATTGCACTTAGTGCACAGATAATACAGGCCTGCGACATCAGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7792..7844)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCGGTGATGCTCCTGAAATTGGCCTCCCCTACAAGCTGCATCCTGTCAGGGGT MF326990
## [10] GCGGTGATGCTCCTGAAATTGGCCTCCCCTACAAGCTGCATCCTGTCAGGGGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCGGCGATGCTCCTGAGATCGGCCTTCCTTACAAACTGCACCCTGTCAGGGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7845..7897)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AACCCAGAACGTGTAAAAGGGGTTTTGAAGAATACAAGGTTTGGGGACATACC MF326990
## [10] AACCCAGAACGTGTAAAAGGGGTTTTGAAGAACACAAGGTTTGGGGACATACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AACCCTGAACGTGTGAAGGGGGTTTTGAAGAACACGAGGTTTGGGGACATACC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7898..7950)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTACAAGACCCCTAGTGACACTGGGAGCCCAGTACATGCGGCCGCCTGTCTCA MF326990
## [10] TTACAAGACCCCTAGTGACACTGGGAGCCCAGTACATGCGGCCGCCTGTCTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTATAGGACCCCTAGTGACACTGGGAGCCCAGTGCACGCCGCTGCTTGTCTTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (7951..8003)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGCCTAATGCCACCCCGGTGACTGACGGGCGCTCCGTCTTGGCCACTACCATG MF326990
## [10] CGCCTAATGCCACCCCGGTGACTGACGGGCGCTCCGTCTTGGCCACTACCATG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGCCTAATGCCACCCCGGTGACTGATGGGCGTTCCGTCTTGGCCACGACCATG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8004..8056)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCTCCGGGTTTGAGTTGTATGTGCCGACCATTCCAGCGTCTGTCCTTGATTA MF326990
## [10] CCCTCCGGGTTTGAGTTGTATGTGCCGACCATTCCAGCGTCTGTCCTTGATTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCTCCGGGTTTGAGTTGTATGTGCCGACTATTCCAGCATCTGTCCTTGATTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8057..8109)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTTGACTCCAGGCCAGATTGCCCTAAACAGTTGACGGAGCACGGGTGTGAAG MF326990
## [10] CCTTGACTCCAGGCCAGATTGCCCTAAACAGTTGACGGAGCACGGGTGTGAAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTCGACTCTAGGCCAGATTGCCCCAAACAGTTGACGGAGCACGGGTGTGAAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8110..8162)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGCTGCATTAAGAGATCTCTCCAAATATGACTTGTCCACCCAAGGTTTTGTT MF326990
## [10] ATGCTGCATTGAGAGATCTCTCCAAATATGACTTGTCCACCCAAGGTTTTGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGCTGCATTGAGAGACCTCTCTAAATATGACTTGTCCACCCAAGGTTTTGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8163..8215)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGCCCGGGGTCCTTCGCCTCGTACGGAAATATTTATTTGCCCACGTGGGCAA MF326990
## [10] TTGCCCGGGGTCCTTCGCCTCGTACGGAAATATTTATTTGCCCACGTGGGCAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGCCCGGAGTCCTTCGCCTTGTGCGGAAATACTTGTTTGCCCACGTGGGTAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8216..8268)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGCCCGCCTGTCCACCGGCCCTCCACCTACCCAGCTAAGAACTCCATGGCTG MF326990
## [10] GTGCCCGCCTGTCCACCGGCCCTCCACCTACCCAGCTAAGAACTCCATGGCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGTCCGCCTGTCCATCGGCCCTCTACTTATCCTGCCAAGAATTCCATGGCCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8269..8321)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAATAAACGGGAATAGGTTCCCAACCAAGGACATTCAGAGCATTCCTGAGATC MF326990
## [10] GAATAAACGGGAATAGGTTCCCAACCAAGGACATTCAGAGCATTCCTGAGATC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAATAAATGGGAACAGGTTCCCAACCAAAGACATTCAGAGCATTCCTGAAATC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8322..8374)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGTTTTATGCGCACAGGCTGTACGAGAGAACTGGCAGACTGTTACCCCTTG MF326990
## [10] GACGTTTTATGCGCACAGGCTGTACGAGAGAACTGGCAGACTGTTACCCCTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACGTTCTGTGTGCACAGGCTGTACGAGAGAACTGGCAGACCGTTACCCCTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8375..8427)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CACTCTCAAGAAACAGTATTGCGGGAAGAAGAAAACCAGGACCATACTCGGCA MF326990
## [10] CACTCTCAAGAAACAGTATTGCGGGAAGAAGAAAACCAGGACCATACTCGGCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CACCCTCAAGAAGCAATATTGTGGGAAGAAGAAAACCAGGACCATACTCGGCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8428..8480)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCAATAACTTTATCGCGCTGGCCCACCGGGCAGCGCTGAGCGGTGTCACCCAG MF326990
## [10] CCAATAACTTTATCGCGCTGGCCCACCGGGCAGCGCTGAGCGGTGTCACCCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCAATAACTTCATTGCGCTGGCCCACCGAGCGGCACTGAGTGGTGTCACCCAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8481..8533)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGCTTCATGAAAAAGGCATTTAACTCGCCCATTGCCCTCGGGAAGAACAAATT MF326990
## [10] GGCTTCATGAAAAAGGCATTTAACTCGCCCATTGCCCTCGGGAAGAACAAATT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGCTTCATGAAGAAGGCGTTTGACTCGCCCATCGCCCTCGGGAAGAACAAATT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8534..8586)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAAGGAGCTGCAAACTCCGGTCCTGGGCAGGTGCCTTGAGGCCGATCTTGCAT MF326990
## [10] CAAGGAGCTGCAAACTCCGGTCCTGGGCAGGTGCCTTGAGGCCGATCTTGCAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAAGGAGCTACAGACCCCAGTCCTGGGTAGATGCCTTGAGGCTGATCTTGCCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8587..8639)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTTGCGATCGATCCACTCCCGCGATTGTTCGCTGGTTTGCCGCCCATCTCCTT MF326990
## [10] CTTGCGATCGATCCACTCCCGCGATTGTCCGCTGGTTTGCCGCCCATCTCCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTTGTGATCGATCCACTCCCGCGATTGTTCGCTGGTTTGCCGCTCATCTCCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8640..8692)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TATGAACTTGCCTGCGCTGAAGAGCACCTACCGTCATATGTGCTGAATTGCTG MF326990
## [10] TATGAACTTGCCTGCGCTGAAGAGCACCTACCGTCATATGTGCTGAACTGCTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TACGAACTTGCTTGCGCTGAGGAGCACCTACCGTCGTATGTGCTGAATTGCTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8693..8745)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCATGACCTATTGGCCACGCAATCCGGTGCGGTGACTAAGAGAGGTGGCCTAT MF326990
## [10] TCATGACCTATTGGTCACGCAATCCGGTGCGGTGACTAAGAGAGGTGGCCTAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCATGACCTATTGATCACGCAGTCCGGCGCGGTGACTAAGAGAGGCGGCCTGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8746..8798)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATCTGGTGATCCGATCACCTCTGTGTCCAACACCATTTATAGTCTGGTCATT MF326990
## [10] CATCTGGTGATCCGATCACCTCTGTGTCCAACACCATTTATAGTCTGGTCATT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CATCTGGTGACCCGATCACCTCGGTATCCAACACCATCTATAGTCTGGTGATT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8799..8851)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TACGCGCAGCACATGGTGCTCAGTTACTTCAAAAGTGGTCACCCACATGGTCT MF326990
## [10] TACGCGCAGCACATGGTACTCAGTTACTTCAAAAGTGGTCACCCACATGGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TATGCGCAACACATGGTGCTCAGTTACTTCAAAAGTGGTCACCCACATGGTCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8852..8904)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTTGTTCCTTCAGGACCAGCTAAAGTTTGAGGACATGCTCAAGGTCCAACCCC MF326990
## [10] CTTGTTCCTTCAGGACCAGCTAAAGTTTGAGGACATGCTCAAGGTTCAACCCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTGTTTCTCCAGGACCAGCTAAAGTTTGAGGATATGCTTAAGGTTCAGCCCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8905..8957)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGATTGTCTATTCGGACGATCTTGTGCTGTATGCCGAGTCTCCCACCATGCCA MF326990
## [10] TGATTGTCTATTCGGACGATCTTGTGCTGTATGCCGAGTCTCCCACCATGCCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGATTGTCTACTCGGATGATCTTGTGCTGTATGCCGAGTCTCCCACCATGCCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (8958..9010)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AACTACCACTGGTGGGTTGAGCACCTGAATTTGATGTTAGGGTTTCAGACGGA MF326990
## [10] AACTACCACTGGTGGGTTGAGCACCTGAATTTGATGTTAGGGTTTCAGACGGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AACTACCACTGGTGGGTTGAGCATCTGAACTTGATGTTAGGGTTTCAGACGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9011..9063)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCGAAGAAAACAACCATTACTGACTCGCCGTCTTTCCTGGGCTGCAGGATAA MF326990
## [10] CCCGAAGAAAACAACCATTACTGACTCGCCGTCTTTCCTGGGCTGCAGGATAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCAAAGAAGACAACTATCACTGACTCGCCATCTTTTCTGGGTTGTAGAATAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9064..9116)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGAATGGGTGTCAGTTGGTCCCAAACCGTGACAGGATTCTCGCAGCTCTTGCC MF326990
## [10] TGAATGGGTGTCAGTTGGTCCCAAACCGTGACAGGATTCTCGCAGCTCTTGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGAGTGGGCGTCAGTTGGTCCCAAACCGTGACAGGATTCTCGCAGCTCTTGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9117..9169)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TATCACATGAAAGCGAATAATGTTTCTGAGTACTACGCCTCCGCCGCTGCAAT MF326990
## [10] TACCACATGAAGGCGAATAATGTTTCTGAGTACTACGCCTCCGCCGCTGCAAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TATCACATGAAGGCGAACAACGTTTCTGAGTACTACGCCTCCGCTGCTGCAAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9170..9222)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACTCATGGACAGTTGTGCTTGTCTAGAGTACGACCCTGAATGGTTTGAAGAAC MF326990
## [10] ACTCATGGACAGTTGTGCTTGTCTAGAGTACGACCCTGAATGGTTTGAAGAAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTCTTGGACAGTTGTGCTTGTCTGGAATATGATCCTGAATGGTTTGAAGAAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9223..9275)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGTGGTTGGGATGGCGCAGTGTGCCCGCAAGGACGGTTACAGTTTCCCCGGC MF326990
## [10] TTGTGGTTGGGATGGCGCAGTGCGCCCGCAAGGACGGTTACAGTTTCCCCGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGTGGTTGGAATGGCACAATGCGCCCGCAAGGACGGCTATAGCTTCCCCGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9276..9328)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCGCCGTTCTTCCTATCCATGTGGGAAAAACTCAGGTCTAATTATGAGGGGAA MF326990
## [10] CCGCCGTTCTTCCTATCCATGTGGGAAAAACTCAGGTCTAATTATGAGGGGAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCGCCGTTCTTCTTGTCCATGTGGGAGAAACTCAGGTCCAATTATGAAGGGAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9329..9381)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAAGTCAAGGGTGTGTGGGTACTGCGGGGCTTCAGCCCCATACGCCACTGCCT MF326990
## [10] GAAGTCAAGGGTGTGTGGGTACTGCGGGGCTTCAGCCCCATACGCCACTGCCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAAGTCAAGGGTATGTGGGTACTGCGGAGCTTCGGCCCCGTACGCCACCGCCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9382..9434)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGGTCTTGACGTCTGTGTTTACCACACCCACTTTCACCAGCATTGTCCAGTC MF326990
## [10] GTGGTCTTGACGTCTGTGTTTACCACACCCACTTTCACCAGCATTGTCCAGTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGGTCTTGACGTCTGTGTTTACCACACTCACTTTCATCAGCATTGTCCAGTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9435..9487)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATAATCTGGTGTGGCCACCCAGCGGGTTCCGGGTCCTGTGATGAGTGTAAGTC MF326990
## [10] ATAATCTGGTGTGGCCACCCAGCGGGTTCCGGGTCCTGTGATGAGTGTAAGTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATAATCTGGTGTGGTCACCCTGCAGGCTCCGGGTCCTGTGATGAGTGCAAATC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9488..9540)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCCACAGGGAAAGGTACAAGCCCTCTGGACGAGGTCTTAAAACAAGTTCCAT MF326990
## [10] TCCCACAGGGAAAGGTACAAGCCCTCTGGACGAGGTCTTAAAACAAGTTCCAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCCATAGGGAAAGGTACAAGCCCTCTAGATGAAGTCTTAAGACAAGTCCCGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9541..9593)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATAAGCCTCCACGGACTGTCCTCATGCATGTGGAGCAGGGCCTCACCCCCCTT MF326990
## [10] ATAAGCCTCCACGGACTGTCCTCATGCATGTGGAGCAGGGCCTCACCCCCCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATAAGCCTCCACGGACCGTTCTCATGCATGTGGAGCAGGGCCTCACCCCCCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9594..9646)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACCCAGGCAGGTATCAGACTCGTCGTGGGTTAGTTGCCGTCAGGCGCGGGAT MF326990
## [10] GACCCAGGCAGGTATCAGACTCGTCGTGGGTTAGTTGCCGTCAGGCGCGGGAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACCCAGGCAGATATCAGACCCGCCGTGGGTTAGTTGCCGTTAGGCGCGGGAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9647..9699)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TAGGGGAAATGAAGTCGACCTGCCAGACGGTGACTATGCCAGCACCGCGTTAC MF326990
## [10] TAGGGGAAATGAAGTCGACCTGCCAGACGGTGACTATGCCAGCACCGCGTTAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAGGGGAAATGAAGTTGACCTACCCGATGGTGATTATGCCAGCACCGCCTTAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9700..9752)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCCAACTTGTAAAGAGATTAACATGGTCGCTGTTGCCTCCAATGTACTGCGT MF326990
## [10] TCCCAACTTGTAAAGAGATTAACATGGTCGCTGTTGCTTCCAATGTACTGCGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCCAACCTGTAAAGAGATCAACATGGTTGCTGTCGCCTCTAATGTGCTGCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9753..9805)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGTAGATTTATCATCGGCCCACCCGGTGCTGGAAAAACACACTGGCTCCTCCA MF326990
## [10] AGTAGATTTATCATCGGCCCACCCGGTGCTGGAAAAACACACTGGCTCCTCCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGCAGGTTTATCATCGGTCCACCCGGCGCAGGCAAAACACACTGGCTCCTTCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9806..9858)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACAGGTTCAGGATGGTGATGTCATTTATACACCGACCCACCAGACCATGCTTG MF326990
## [10] ACAGGTTCAGGATGGTGATGTCATTTATACACCGACCCACCAGACCATGCTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACAGGTCCAGGATGGTGATGTCATATATACACCGACCCATCAGACCATGCTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9859..9911)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATATGATTAAAGCTTTGGGGACGTGCCGGTTTAATGTTCCGGCAGGCACAACG MF326990
## [10] ATATGATTAAAGCTTTGGGGACGTGTCGGTTTAATGTTCCGGCAGGCACAACG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACATGATTAAAGCTTTGGGGACGTGCCGGTTTAACGTTCCGGTAGGCACAACG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9912..9964)                                      names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTGCAATTCCCTGCCCCTTCACGTACAGGCCCGTGGGTTCGCATTCTAGCCGG MF326990
## [10] CTGCAATTCCCTGCCCCTTCACGTACAGGCCCGTGGGTTCGCATTCTGGCCGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTGCAATTCCCCGCCCCTTCCCGCACTGGCCCGTGGGTTCGCATCCTGGCTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (9965..10017)                                     names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGGGTGGTGTCCTGGCAAAAATTCATTCCTGGACGAAGCTGCGTACTGCAACC MF326990
## [10] CGGGTGGTGTCCTGGCAAAAATTCATTCCTGGACGAAGCTGCATACTGCAACC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGGGTGGTGTCCTGGCAAGAACTCCTTCCTGGACGAAGCTGCGTATTGTAATC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10018..10070)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCTTGATGTCCTGAGGCTCCTTAGTAAAACTACTCTCACCTGTTTGGGAGAC MF326990
## [10] ACCTTGATGTCCTGAGGCTCCTTAGTAAAACTACTCTCACCTGTTTGGGAGAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATCTTGATGTCTTGAGGCTTCTTAGCAAAACCACTCTCACCTGTTTGGGGGAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10071..10123)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCAAACAACTCCATCCGGTGGGTTTTGATTCTCACTGCTATGTGTTTGACGT MF326990
## [10] TTCAAACAACTCCATCCGGTGGGTTTTGATTCTCACTGCTATGTGTTTGACGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTCAAACAACTTCACCCAGTGGGTTTTGATTCTCATTGCTATGTCTTTGACAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10124..10176)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATGCCTCAAACTCAACTGAAGACTATCTGGAGGTTTGGACAAAATATCTGTG MF326990
## [10] CATGCCTCAAACTCAACTGAAGACTATCTGGAGGTTTGGACAAAATATCTGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TATGCCTCAGACTCAACTGAAGACCATTTGGAGGTTTGGACAGAACATCTGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10177..10229)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGCCATTCAACCAGATTACAGGGACAAGCTTATGTCCATGGTCAACACAACT MF326990
## [10] ATGCCATTCAACCAGATTACAGGGACAAGCTTATGTCCATGGTCAACACAACT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGCCATCCAACCAGACTACARAGACAAGCTTATGTCCATGGTCAACACAACT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10230..10282)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGTGTAACTTATGTGGAAAAGCCCGTCAAATATGGGCAAGTCCTCACCCCTTA MF326990
## [10] CGTGTAACCTATGTGGAAAAGCCCGTCAAATATGGGCAAGTCCTCACCCCTTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGTGTAACTTATGTGGAGAAACCTGTCAACTATGGGCAAGTCCTCACCCCCTA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10283..10335)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCATAGGGACCGCGAGGATGGCGCCATTACCATTGACTCCAGTCAAGGTGCCA MF326990
## [10] CCATAGGGACCGCGAGGATGGCGCCATTACCATTGACTCCAGTCAAGGTGCCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCATAGGGACCGAGAGGATAGTGCCATCACCATTGACTCCAGTCAAGGTGCCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10336..10388)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATTTGATGTGGTTACACTGCATTTGCCCACGAAAGATTCACTCAACAAACAA MF326990
## [10] CATTTGATGTGGTTACACTGCATTTGCCCACGAAAGATTCACTCAACAAACAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CATTTGATGTGGTTACACTGCATTTGCCCACAAAAGATTCACTCAACAAACAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10389..10441)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGGGCCCTTGTTGCTATCACCAGGGCAAGACATGCCATCTTTGTGTATGACCC MF326990
## [10] AGGGCCCTTGTTGCTATCACCAGGGCAAGACATGCCATCTTTGTGTATGACCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGGGCCCTTGTTGCTATTACCAGGGCAAGGCATGCCATCTTTGTGTATGACCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10442..10494)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACATGGGCAACTGCAGAGCTTATTTGATCTTCCTGCAAAAAGCACGCCCGTCA MF326990
## [10] ACATGGGCAACTGCAGAGCTTATTCGATCTTCCTGCAAAAAGCACGCCCGTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACATAGGCAACTGCAGAGCCTATTTGATCTTCCTGCAAAAAGCACGCCCGTCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10495..10547)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACCTGGCCATGCACCGTGATGGGCAACTGATTGTGCTAGACAGAAATAATAAA MF326990
## [10] ACCTGGCCATGCACCGTGATGGGCAACTGATTGTGCTAGACAGAAATAATAAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACCTGGCCGTGCTCCGTGATGGGCAACTGATTGTGCTAGACAGAAATAACAAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10548..10600)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAATGCACGGTTGCCCAGGCTCTGGGCAATGGTGACAAATTCAGGGCCACAGA MF326990
## [10] GAATGCACGGTTGCCCAGGCTCTGGGCAATGGTGACAAATTCAGGGCCACAGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAATGCACAGTTGCCCAAGCTCTGGGTAATGGTGATAAATTTAGGGCCACAGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10601..10653)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAAGCGCGTTGTGGACTCTCTCCGCGCCATTTGTGCTGACCTGGAAGGGTCGA MF326990
## [10] CAAGCGCGTTGTGGACTCTCTCCGCGCCATTTGTGCTGACCTGGAAGGGTCGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TAAGCGCGTTGTAGATTCTCTTCGCGCTATTTGTGCTGACCTGGAAGGGTCGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10654..10706)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCTCCCCGCTCCCCAAGGTTGCACATAATTTGGGGTTTTACTTCTCACCTGAT MF326990
## [10] GCTCCCCGCTCCCCAAGGTTGCACATAATTTGGGGTTTTACTTCTCACCTGAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTTCTCCGCTTCYCAAGGTTGCACATAACTTGGGGTTTTATTTCTCACCTGAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10707..10759)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTGACACAGTTCGCCAAGCTTCCGATAGAACTTGCACCACACTGGCCAGTGGT MF326990
## [10] TTGACACAGTTCGCCAAGCTTCCGATAGAACTTGCACCACACTGGCCAGTGGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGACACAGTTTGCCAAGCTCCCAATAGAACTTGCACCGCATTGGCCAGTGGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10760..10812)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GACGACCCAAAACAATGAGAACTGGCCTGATCGACTGGTTGCCAGCCTGCGCC MF326990
## [10] GACGACCCAAAACAATGAGAACTGGCCTGATCGACTGGTTGCCAGCCTGCGCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACGACCCAAAACAATGAGAACTGGCCTGACCGGCTGGTTGCCAGCCTACGCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10813..10865)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCATTCACAAATATAGCCGTGCATGTGTCGGTGCCGGCTATATGGTGGGCCCC MF326990
## [10] CCATTCACAAATATAGCCGTGCATGTGTCGGTGCCGGCTATATGGTGGGCCCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCATTCACAAATATAGCCGTGCATGTATCGGTGCCGGYTATATGGTGGGCCCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10866..10918)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCGGTGTTTTTAGGCACCCCTGGGGTAGTGTCATACTATCTCACAAAGTTTGT MF326990
## [10] TCGGTGTTTTTAGGCACCCCTGGGGTAGTATCATACTATCTCACAAAGTTTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCGGTGTTTTTAGGCGCCCCTGGGGTAGTGTCATACTATCTCACAAAATTTGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10919..10971)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AAGAGGCGAGGCTCAGGTGCTTCCAGAAACGGTCTTCAGCACTGGCCGAATTG MF326990
## [10] AAGAGGCGAGGCTCAGGTGCTTCCAGAAACGGTCTTCAGCACTGGCCGAATTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAAGGGCGAGGCTCAGGTGCTTCCAGAAACGATCTTCAGCACTGGCCGAATTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (10972..11024)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGGTGGACTGCCGAGAGTATCTTGACGATCGGGAGCGGGAAATTGCAGCGTCT MF326990
## [10] AGGTGGACTGCCGAGAGTATCTTGACGATCGGGAGCGGGAAGTTGCAGCGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGGTGGACTGCCGAGAGTACCTTGATGATCGGGAGCGGGAAGTCGCAGCGTCC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11025..11077)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTCCCGCACGCTTTTATTGGCGACGTCAAAGGCACTACTGTGGGAGGGTGTCA MF326990
## [10] CTCCCGCACGCTTTTATTGGCGACGTCAAAGGCACTACTGTGGGAGGGTGTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CTCCCACACGCCTTTATCGGTGATGTCAAAGGCACCACTGTGGGAGGGTGTCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11078..11130)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCATGTCACTTCCAAATACCTCCCGCGCTTCCTTCCCAAGGAATCAGTCGCAG MF326990
## [10] CCATGTCACTTCCAAATACCTCCCGCGCTTCCTTCCCAAGGAATCAGTCGCAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCATGTCACCTCTAAATATCTCCCACGCTTCCTCCCTAAGGAATCAGTCGCGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11131..11183)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGTCGGGGTTTCAAGCCCCGGGAAAGCCGCAAAGGCGGTGTGCACATTGACA MF326990
## [10] TGGTCGGGGTTTCAAGCCCCGGGAAAGCCGCAAAGGCGGTGTGCACATTGACA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGTCGGGGTTTCAAGCCCCGGGAAAGCCGCAAAAGCAGTGTGCACGTTGACG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11184..11236)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GATGTGTACCTCCCAGACCTTGAAGCTTACCTCCATCCAGAGACCCTGTCCAA MF326990
## [10] GATGTGTACCTCCCAGACCTTGAGGCTTACCTCCATCCAGAGACCCTGTCCAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GATGTGTACCTTCCAGACCTTGAGGCCTACCTTCATCCTGTAACCCAGTCCAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11237..11289)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGCTGGAAATTGATGTTGGACTTTAAAGAAGTTCGACTGATGGTGTGGAAGG MF326990
## [10] GTGCTGGAAATTGATGTTGGACTTTAAAGAAGTTCGACTGATGGTGTGGAAGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGCTGGAAAATGATGTTGGACTTTAAAGAAGTTCGACTGATGGTTTGGAAGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11290..11342)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACAAGACGGCCTATTTCCAACTCGAAGGTCGTCATTTCACCTGGTATCAGCTT MF326990
## [10] ACAAGACGGCCTATTTCCAACTCGAAGGTCGTCATTTCACCTGGTATCAGCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACAGAACGGCCTACTTCCAACTCGAAGGTCGTCATTTTACCTGGTATCAGCTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11343..11395)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCTAGCTTTGCTTCGTACATCCGTGTTCCTGTGAACTCCACAGTGTACCTGGA MF326990
## [10] GCTAGCTTTGCTTCGTACATCCGTGTTCCTGTGAACTCCACAGTGTACCTGGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTAGCTTTGCTTCGTACATCCGTGTTCCTGTGAATTCCACGGTGTACCTGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11396..11448)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCCCTGCATGGGCCCCGCCCTTTGCAACAGGAAAGTTGTCGGGTCCCCTCATT MF326990
## [10] CCCCTGCATGGGCCCCGCCTTTTGCAACAGGAAAGTTGTCGGGTCCCCTCATT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCCCTGCATGGGCCCTGCCCTTTGCAACAGGAAAGTCGTTGGGTCCCCTCATT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11449..11501)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GGGGAGCTGACCTTGCAGTCACCCCTTATGATTACGGAGCTAGAAAAATTTTG MF326990
## [10] GGGGAGCTGACCTCGCAGTCACCCCTTATGATTACGGAGCTAGAAAAATTTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGGGAGCCGACCTCGCGGTCACCCCTTATGATTATGGAGCTAGAAAAATTTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11502..11554)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCAGCGCATATCATGGCGAGATGCCTCCTGGGTACAAGATTCTGGCGTGTGC MF326990
## [10] TCCAGCGCATATCATGGCGAGATGCCTCCTGGGTACAAGATTCTGGCGTGTGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCAGCGCATATCATGGTGAGATGCCTCCTGGGTACAAGATTCTGGCGTGCGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11555..11607)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AGAGTTCTCGCTAGACGACCCAGTCAGATACAAGCACACTTGGGGGTTCGAGT MF326990
## [10] AGAGTTCTCGCTAGACGACCCAGTCAGATACAAGCACACTTGGGGGTTCGAGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGAGTTCTCGCTGGACGACCCAGTCAGGTACAGGCACACTTGGGGGTTTGAGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11608..11660)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGGATACAGCGTACCTGTACGAGTTCACTGAAAACGGTGAGGACTGGGAGGAT MF326990
## [10] CGGATACAGCGTACTTGTACGAGTTCACTGGAAACGGTGAGGACTGGGAGGAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGGACACAGCGTACTTGTACGAGTTCACTGGAGACGGCGAGGACTGGGAGGAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11661..11713)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TACAACGACGCGTTTCGTGCGCGACAGAAAGGGAGAATTTACAAGGCCACTGC MF326990
## [10] TACAACGACGCGTTTCGTGCGCGACAGAAAGGGAGAATTTACAAGGCCACTGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TACAACGACGCGTTTCGTGCGCGACAGAAAGGAAAAATTTACAAAGCCACTGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11714..11766)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CACCAACCTGAAGTTCCACTTCCCTCCGGGTCACATCGTTGAACCAACGTTGG MF326990
## [10] CACCAACCTGAAGTTCCACTTCCCTCCGGGTCACATCGTTGAACCAACGTTGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CACCAGCCTGAAGTTCCACTTCCCTCCGGGTCACATCGTTGAACCAACTTTGG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11767..11819)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCTGGACTGAAATGAAATGGGTGCTTTACAAAGCCTTTTTGATAGAATTGGC MF326990
## [10] GCCTGGACTGAAATGAAATGGGTGCTTTACAAAGCCTTTTTGATAGAATTGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCTGAACTGAAATGAAATGGGGGCTCTGCAAAGCCTTTTTGACAAAATTGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11820..11872)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CAACTTTTTGTGGATGCCTTCACGGAGTTCTTGGTGTCTATTGTTGACATTGT MF326990
## [10] CAACTTTTTGTGGATGCCTTCACGGAGTTCTTGGTGTCTATTGTTGACATTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CAACTGTTTGTGGACGCATTCACGGAGTTTTTGGTTTCCATTGTTGATATCAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11873..11925)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATATTTCTGGCCATCTTGTTTGGCTTCACAGTCGCCGGTTGGCTGGTTGTCT MF326990
## [10] CATATTTCTGGCCATCTTGTTTGGCTTCACAGTCGCCGGTTGGCTGGTTGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CATATTTTTGGCCATTTTGTTCGGCTTCACAATCGCCGGATGGTTGGTGGTAT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11926..11978)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTTGCATCAGATTGGTTTGCTCCACGATACTCCGTGCGCGCTCTGCCGTTCAC MF326990
## [10] TTTGCATCAGATTGGTTTGCTCCACGATACTCCGTGCGCGCTCTGCCGTTCAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTTGCATCAGATTGGTTTGCTCCGCGATACTCCGTGCGCGCTCTGCCGTTCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (11979..12031)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCTGAGCAGTTACAGAAGATCCTATGAGGTTTTCCTTCCCCTGTGCCAGACGG MF326990
## [10] TCTGAGCAGTTACAGAAGGTCCTATGAGGTCTTCCTTCCCCTGTGCCAGACGG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTGAGCAGTTACAGAAGATCCTATGAGGCTTACCTTTCCCAGTGCCGGGTTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12032..12084)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ATGTCCCCGTCTGGGGAACCAAGCACCCCCTAGGAATGTTTTGGCACCATAAG MF326990
## [10] ATGTCCCCGTCTGGGGAACCAAGCACCCCCTAGGAATGTTTTGGCACCATAAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACATCCCTTCCTGGGGGATGAAACATCCCTTGGGAATAMYTTGGCACCACAAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12085..12137)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GTGTCAACCCTGATTGATGAAATGGTGTCGCGTCGAATGTACCGCACCATGGA MF326990
## [10] GTGTCAACCCTGATCGATGAAATGGTGTCGCGTCGAATGTACCGCACCATGGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTGTCGACCCTGATTGATGAAATGGTGTCGCGACGCMTGTACMGCACCATGGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12138..12190)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AAATGCAGGACAGGCTGCCTGGAAACAGGTGGTGAGCGAGGCTACTCTGTCTC MF326990
## [10] AAATGCAGGACAGGCTGCCTGGAAACAGGTGGTGAGCGAGGCTACTCTGTCTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAATGCAGGACAGGCTGCTTGGAAGCAAGTGGTGAGCGAGGCCACGCTATCTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12191..12243)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCATTAGCAGCTTGGATGTAGTGGCTCATTTCCAGCATCTCGCCGCCATTGAA MF326990
## [10] GCATTAGCAGCTTGGATGTAGTGGCTCATTTCCAGCATCTCGCCGCCATTGAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCATCAGCAGCTTGGACGTGGTAGCCCATTTCCAACACCTCGCTGCCATTGAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12244..12296)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCGAGACCTGTAAATATTTGGCCTCCCGGCTGCCCATGCTGCACAACCTACG MF326990
## [10] GCCGAGACCTGTAAATATTTGGCCTCCCGGCTGCCCATGCTGCACAACCTACG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCGAGACTTGCAAATATTTGGCCTCCCGGCTTCCCATGCTGCACAACTTGCG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12297..12349)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CATGACAGGGTCGAATGTAACCATAGTGTACAACAGCACTTTGAATCGGGTAT MF326990
## [10] CATGACAGGGTCGAATGTAACCATAGTGTACAACAGCACTTTGAATCGGGTAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGCAACGGGGTCAAATGTAACCATAAAATATAACAGTTCCTCAGGTCAGGTGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12350..12402)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTGCTATTTTCCCGACCCCCGGCTCCCGGCCAAAACTTCATGATTTTCAGCAA MF326990
## [10] CTGCTATTTTCCCGACCCCCGGCTCCCGGCCAAAACTTCATGATTTTCAGCAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGCTATCTTCCCAACCCCAGGCTCCCGGCCTAAACTCCATGACTTTCAGCAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12403..12455)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGCTAATAGCTGTACACTCCTCCATATTCTCTTCTGTTGCAGCTTCTTGCAC MF326990
## [10] TGGCTAATAGCTGTACACTCCTCCATATTCTCTTCTGTTGCAGCTTCTTGTAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGTTAATTGCTGTGCACTCCTCCATATTTTCCTCTGTTGCAGCTTCTTGCAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12456..12508)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCTCTTTGTTGTGTTGTGGTTGCGAATTCCAACGCTACGTTCTGTTTTTGGTT MF326990
## [10] TCTCTTTGTTGTGTTGTGGTTGCGAATTCCAACGCTACGTTCTGTTTTTGGTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTTATTTGTTGTGCTATGGCTACGAGTGCCAATTCTACGTACTGTTTTTGGTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12509..12561)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCGCTGGTTAGGGGCAATTTTTCCTTCGAGCTCCTTGTGAATTACACGGTGT MF326990
## [10] TCCGCTGGTTAGGGGCAATTTTTCCTTCGAGCTCCTTGTGAATTATACGGTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCCACTGGTTAGGGGCAATTTCTCTTTCGAGCTCATGGTGAATTATACGGTGT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12562..12614)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCAGCCTTGCCTTACTCGACAAGCAGCCGCTCAGATTTATGAACCTGGCAGA MF326990
## [10] GCCAGCCTTGCCTTACTCGACAAGCAGCCGCTCAGATTTATGAACCTGGCAGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCAGCCATGCCTCACCCGGCAGGCGGCCGCTCAGATTCTCGAACCCGGTAGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12615..12667)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TCCCTTTGGTGCAGGATTGGGCATGATCGATGTGAGGAGAACGACCATGACGA MF326990
## [10] TCCCTTTGGTGCAGGATTGGGCATGATCGATGTGAGGAGAACGACCATGACGA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCTTTGTGGTGTAGGATAGGGCATGATCGATGTGAGGATAGCGACCATGATGA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12668..12720)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCTGGGATTTGTGGTACCGCCTGGTCTTTCCAGCGAAGGCCATCTGACCAGTG MF326990
## [10] GCTAGGATTTGTGGTACCGCCTGGTCTTTCCAGCGAAGGCCATTTGACCAGTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTGGAATTTGCTGTGCCGTCTGGCCTTTCTAATGAGGGTCATTTGACTAGTG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12721..12773)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CTTATGCCTGGTTGGCGTTCTTGTCCTTCAGTTATACAGCCCAGTTTCATCCC MF326990
## [10] CTTATGCCTGGTTGGCGTTCTTGTCCTTCAGTTATACAGCCCAGTTTCATCCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCTATGCTTGGTTGGCGTTTTTGTCCTTTAGCTACACGGCACAGTTCCACCCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12774..12826)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GAGATATTCGGAATCGGGAATGTGAGCACCGTTTATGTTGACAAACCCCGACA MF326990
## [10] GAGATATTCGGAATCGGGAATGTGAGCACCGTTTATGTTGACAAACCCCGTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GAAATATTCGGGATAGGAAATGTGAGCCAGATTTATGTTGACATTCAGAAGCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12827..12879)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACTCATTTGTGCCGTTCATGATGGGCAGAATGCCACCTTGTCCCGCTACGATA MF326990
## [10] ACTCATTTGTGCCGTTCATGATGGGCAGAATGCCACCTTGTCCCGCTACGATA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTTATTTGTGCCGTCCACGATGGACAGAATGCCACCTTGCCTAGTCATGACA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12880..12932)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACATCACAGCCGTGTACCAGACCTACTATCAACATCAAGTTGATGGCGGCAAT MF326990
## [10] ACATCACAGCCGTGTATCAGACCTACTATCAACATCAAGTTGATGGCGGCAAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATATTACGGCCGTTTATCAGACTTACTATCAACATCAGGTCGATGGAGGCAAC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12933..12985)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGGTTTCACCTAGAATGGCTGCGTCCTTTCTTTTCCTCTTGGTTGGTTTTGAA MF326990
## [10] TGGTTTCACCTAGAATGGCTGCGTCCTTTCTTTTCCTCTTGGTTGGTTTTGAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGGTTTCACCTGGAATGGCTGCGTCCTTTCTTTTCCTCTTGGTTGGTTTTGAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (12986..13038)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGTTTCATGGTTTCTCAGGCGTTCGCCTGTAAACCGTGTTTCAGTTCGAGTCT MF326990
## [10] CGTTTCATGGTTTCTCAGGCGTTCGCCTGTAAACCGTGTTTCAGTTCGAGTCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGTTTCATGGTTTCTCAGGCGTTCGCCTGTAAGCCGTGTTTCAGTTCGAGTCT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13039..13091)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TTCAGATATCGAGACCAATACCACCAGCGCAGCAAGTTCCGTTGTCCTCCAAG MF326990
## [10] TTCAGATATCGAGACTAATACCACCAGCGCAGCAAGTTCCGTTGTCCTCCAAG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTCAGACATTGAGACCAACACCACCAGCGCAGCAAGTTCTGTTGTCCTCCAAG ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13092..13144)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] ACATCAGCTGTCTTAGGCATAACAACCCGTCCTCTGCGGCGTTTCGCAAAATC MF326990
## [10] ACATCAGCTGTCTTAGGCATAGCAACCCGTCCTCTGCGGCGTTTCGCAAAATC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACATCAGCTGTCTTAGGCATAGCAACCCGTCCCCTGCGGCGTTTCGCAAAATC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13145..13197)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CCTCAGTGCCGCACGGCGATAGGAACACCCGTCTACATCACTATCACAGCCAA MF326990
## [10] CCTCAGTGCCGCACGGCGATAGGAACACCCGTCTACATCACTATCACAGCCAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CCTCAGTGCCGCACGGCGATAGGAACGCCCGTCTACATCACCGTCACAGCCAA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13198..13250)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] CGTGACGGATGAGAATTATTTGCATTCCTCTGACCTTCTCATGCTCTCTTCTT MF326990
## [10] CGTGACGGATGAGAATTATTTGCATTCCTCTGACCTTCTCATGCTCTCTTCTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGTGACAGATGAAAATTATTTGCATTCCTCTGACCTTCTCATGCTCTCCTCTT ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13251..13303)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] GCCTTTTCTACGCTTCTGAGATGAGTGAAAAGGGATTTAAGGTGATATTTGGC MF326990
## [10] GCCTTTTCTACGCTTCTGAGATGAGTGAAAAGGGAYTTAAGGTGATATTTGGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCTTTTCTACGCTTCTGAGATGAGTGAAAAGGGACTCAAGGTAATATTTGGC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13304..13356)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] AATGTGTCAGGCATTGTGGCTGTGTGTGTCAACTTTACCAGCTATGTTCAACA MF326990
## [10] AATGTGTCAGGCATTGTGGCTGTGTGTGTCAACTTTACCAGCTATGTTCAACA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AATGTGTCAGGCATTGTGGCTGTGTGTGTCAACTTCACCAGCTATGTCCAGCA ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13357..13409)                                    names
##  [1] ----------------------------------------------------- BH66/21-01_cons
##  [2] ----------------------------------------------------- BH66/21-06_cons
##  [3] ----------------------------------------------------- BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ----------------------------------------------------- BH66/21-02_cons
##  [6] ----------------------------------------------------- BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ----------------------------------------------------- BH66/21-17_cons
##  [9] TGTCAAGGAGTTCACCCAGCGATCCTTAGTGATTGATCATGTGCGGCTGCTTC MF326990
## [10] TGTCAAGGAGTTCACCCAGCGATCCTTAGTGGTTGACCATGTGCGGCTGCTTC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TGTCAAGGAGTTCACCCAGCGATCCCTAGTGGTTGATCATGTGCGGCTGCTTC ON844087
##  Con ----------------------------------------------------- Consensus 
## 
##      aln (13410..13462)                                    names
##  [1] -----------CCTGAGACTATGCGGTGGGCGACCGTTTTAGCCTGTTTTTTT BH66/21-01_cons
##  [2] -----------CCTGAGACTATGCGGTGGGCGACCGTTTTAGCCTGTTTTTTT BH66/21-06_cons
##  [3] -----------CCTGAGACTATGCGGTGGGCGACCGTTTTAGCCTGTTTTTTT BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] -----------CCTGAGACTATGCGGTGGGCGACCGTTTTAGCCTGTTTTTTT BH66/21-02_cons
##  [6] -----------CCTGAGACTATGCGGTGGGCGACCGTTTTAGCCTGTTTTTTT BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] -----------CCTGAAACCATGCGGTGGGCGACCGTTTTAGCCTGTCTTTTT BH66/21-17_cons
##  [9] ACTTCATGACACCTGAAACTATGCGGTGGGCGACCGTTTTAGCCTGTCTTTTT MF326990
## [10] ACTTCATGACACCTGCAACTATGCGGTGGGCGACCGTTTTAGCCTGTCTTTTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ACTTCATGACACCTGAAACTATGCGGTGGGCGACCGTTTTAGCCTGTCTTTTT ON844087
##  Con -----------CCTGA?ACTATGCGGTGGGCGACCGTTTTAGCCTGT?TTTTT Consensus 
## 
##      aln (13463..13515)                                    names
##  [1] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG BH66/21-01_cons
##  [2] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG BH66/21-06_cons
##  [3] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG BH66/21-02_cons
##  [6] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTCGACCG BH66/21-17_cons
##  [9] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG MF326990
## [10] GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCCATTCTGTTGGCAATTTGAATGTTTGGATATGTTGGGGAAATGCTTGACCG ON844087
##  Con GCCATTCTGCTGGCGATTTGAATGTTCAGGTATGTTGGGGAAATGCTTGACCG Consensus 
## 
##      aln (13516..13568)                                    names
##  [1] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-01_cons
##  [2] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-06_cons
##  [3] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-02_cons
##  [6] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] CGGGCTGCTGCTCGCAATCGCTTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT BH66/21-17_cons
##  [9] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT MF326990
## [10] CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] CGGGTTATTACTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCATTCTGTCTT ON844087
##  Con CGGGCTGCTGCTCGCAATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTTTT Consensus 
## 
##      aln (13569..13621)                                    names
##  [1] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTAATTTA BH66/21-01_cons
##  [2] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTAATTTA BH66/21-06_cons
##  [3] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTAATTTA BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA BH66/21-02_cons
##  [6] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA BH66/21-17_cons
##  [9] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA MF326990
## [10] GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTTGCGCTCGCCAACGCCAACGACGGCAGCAGCTCTCATTTACAGTTGATTTA ON844087
##  Con GTTGCGCTCGTCAACGCCAACAACAGCAGCAGCTCCCATTTACAGTTGATTTA Consensus 
## 
##      aln (13622..13674)                                    names
##  [1] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAATTTTG BH66/21-01_cons
##  [2] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAATTTTG BH66/21-06_cons
##  [3] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAATTTTG BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAGTTTTG BH66/21-02_cons
##  [6] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAGTTTTG BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAGCTTTG BH66/21-17_cons
##  [9] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAAGTTTTG MF326990
## [10] TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAACAAAAGTTTTG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TAACCTGACGATATGTGAGCTGAACGGCACAGATTGGCTGAACGATCATTTCA ON844087
##  Con TAACCTGACGATATGTGAGCTGAATGGCACAGATTGGCTAAATAAAA?TTTTG Consensus 
## 
##      aln (13675..13727)                                    names
##  [1] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-01_cons
##  [2] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-06_cons
##  [3] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-02_cons
##  [6] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ATTGGGCGGTGGAGACCTTTGTCATCTTTCCTGTGTTGACTCATATTGTCTCC BH66/21-17_cons
##  [9] ATTGGGCGGTGGAGACCTTTGTTATTTTTCCTGTGTTGACTCATATTGTCTCC MF326990
## [10] ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACCCATATTGTCTCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCTGGGCAGTGGAGACTTTCGTCATCTTCCCTGCGTTGACCCACATTGTCTCT ON844087
##  Con ATTGGGCGGTGGAGACCTTTGTTATCTTTCCTGTGTTGACTCATATTGTCTCC Consensus 
## 
##      aln (13728..13780)                                    names
##  [1] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-01_cons
##  [2] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-06_cons
##  [3] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-02_cons
##  [6] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT BH66/21-17_cons
##  [9] TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT MF326990
## [10] TATGKCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TATGGCGCCCTCACCACTAGCCATTTTCTTGACACGGTCGGCCTGATCACTGT ON844087
##  Con TATGGCGCCCTCACCACCAGCCATTTCCTTGACACAGTCGGCCTGATCACCGT Consensus 
## 
##      aln (13781..13833)                                    names
##  [1] GTCTGCCGCCGGATATCACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-01_cons
##  [2] GTCTGCCGCCGGATATCACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-06_cons
##  [3] GTCTGCCGCCGGATATCACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] GTCTGCCGCCGGATATCACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-02_cons
##  [6] GTCTGCCGCCGGATATCACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] GTCTGCCGCCGGATATTACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG BH66/21-17_cons
##  [9] GTCTGCCGCCGGATATTACCACGGGCGGTATGTCTTGAGTAGCATTTATGCCG MF326990
## [10] GTCTGCCGCCGGATATTACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GTCCACCGCCGGATATTATCACAAGCGGTATGTATTGAGCAGCATTTACGCTG ON844087
##  Con GTCTGCCGCCGGATAT?ACCACGGGCGGTATGTCTTGAGTAGCATTTACGCCG Consensus 
## 
##      aln (13834..13886)                                    names
##  [1] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT BH66/21-01_cons
##  [2] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT BH66/21-06_cons
##  [3] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT BH66/21-02_cons
##  [6] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAGCAAAAAATTGT BH66/21-17_cons
##  [9] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT MF326990
## [10] TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCTGTGCCCTGGCTGCGTTGGTTTGCTTCGCCATTAGGTTGGCGAAAAATTGC ON844087
##  Con TCTGCGCCCTGGCTGCGTTAACTTGCTTCGTCATCAGGCTAACAAAAAATTGT Consensus 
## 
##      aln (13887..13939)                                    names
##  [1] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-01_cons
##  [2] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-06_cons
##  [3] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-02_cons
##  [6] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA BH66/21-17_cons
##  [9] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA MF326990
## [10] ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTTGACACCAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGTCCTGGCGCTACTCATGTACCAGATATACCAATTTTCTCCTGGACACTAA ON844087
##  Con ATGTCCTGGCGTTACTCATGCACCAGATACACTAACTTTCTTCTGGACACCAA Consensus 
## 
##      aln (13940..13992)                                    names
##  [1] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATTATAGAGAAAGGGGGTAAAA BH66/21-01_cons
##  [2] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATTATAGAGAAAGGGGGTAAAA BH66/21-06_cons
##  [3] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATTATAGAGAAAGGGGGTAAAA BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATTATAGAGAAAGGGGGTAAAA BH66/21-02_cons
##  [6] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATTATAGAGAAAGGGGGTAAAA BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATCATAGAGAAAGGGGGTAAAA BH66/21-17_cons
##  [9] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATCATAGAGAAAGGGGGTAAAA MF326990
## [10] GGGCAAACTCTATCGTTGGCGGTCTCCTGTCATCATAGAGAAAGGGGGTAAAA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GGGCAAACTCTACCGCTGGCGGTCACCCGTCATCATAGAGAAGGGGGGTAAAG ON844087
##  Con GGGCAAACTCTATCGTTGGCGGTCTCCTGTCAT?ATAGAGAAAGGGGGTAAAA Consensus 
## 
##      aln (13993..14045)                                    names
##  [1] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-01_cons
##  [2] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-06_cons
##  [3] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-03_cons
##  [4] ----------------------------------------------------- BH66/21-05_cons
##  [5] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-02_cons
##  [6] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-04_cons
##  [7] ----------------------------------------------------- BH66/21-15_cons
##  [8] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC BH66/21-17_cons
##  [9] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC MF326990
## [10] TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TTGATGTTGGGGGCCATTTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCC ON844087
##  Con TTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGACGGTTCC Consensus 
## 
##      aln (14046..14098)                                    names
##  [1] GTGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-01_cons
##  [2] GTGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-06_cons
##  [3] GTGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-03_cons
##  [4] --------------AACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-05_cons
##  [5] GTGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-02_cons
##  [6] GTGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-04_cons
##  [7] -----------TTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-15_cons
##  [8] GCGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC BH66/21-17_cons
##  [9] GCGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC MF326990
## [10] GCGGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GCGGCAACTCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC ON844087
##  Con G?GGCAACCCCTGTAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAGAC Consensus 
## 
##      aln (14099..14151)                                    names
##  [1] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-01_cons
##  [2] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-06_cons
##  [3] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-03_cons
##  [4] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-05_cons
##  [5] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-02_cons
##  [6] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-04_cons
##  [7] GACTTCTGTTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-15_cons
##  [8] GACTTCTGTTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT BH66/21-17_cons
##  [9] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT MF326990
## [10] GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] GACTTCTGCAATGACATCACGGCTCCGCAAAAAGTGATCTTGGCATTTTCTAT ON844087
##  Con GACTTCTGCTATGACAGCACAGCCCCGCAAAAGGTGCTTTTGGCGTTTTCCAT Consensus 
## 
##      aln (14152..14204)                                    names
##  [1] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-01_cons
##  [2] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-06_cons
##  [3] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-03_cons
##  [4] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-05_cons
##  [5] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-02_cons
##  [6] CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-04_cons
##  [7] CACATACACACCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-15_cons
##  [8] CACATACACACCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC BH66/21-17_cons
##  [9] CACCTACACGCCAATAATGATATATGCCTTGAAGGTAAGTCGCGGTCGACTGC MF326990
## [10] CACCTACACGCCAATAATGATATATGCCTTGAAGGTAAGTCGCGGTCGACTGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TACCTATACACCAGTGATGATATATGCCCTAAAAGTGAGTCGTGGCCGGCTAC ON844087
##  Con CACATACACGCCAATAATGATATATGCTTTGAAGGTAAGTCGCGGTCGACTGC Consensus 
## 
##      aln (14205..14257)                                    names
##  [1] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-01_cons
##  [2] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-06_cons
##  [3] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-03_cons
##  [4] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-05_cons
##  [5] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-02_cons
##  [6] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCTTTTACTTTTGGGTAT BH66/21-04_cons
##  [7] TGGGGCTCTTGCACCTCTTGATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-15_cons
##  [8] TGGGGCTCTTGCACCTCTTGATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT BH66/21-17_cons
##  [9] TGGGGCTCTTGCACCTCTTAATATTCCTGAATTGTGCCTTTACTTTTGGGTAT MF326990
## [10] TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TAGGGCTTTTACATCTTTTGATCTTTCTAAACTGTGCTTTTACCTTCGGGTAT ON844087
##  Con TGGGGCTCTTGCACCTCTTAATTTTCCTGAATTGTGCCTTTACTTTTGGGTAT Consensus 
## 
##      aln (14258..14310)                                    names
##  [1] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-01_cons
##  [2] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-06_cons
##  [3] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-03_cons
##  [4] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-05_cons
##  [5] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-02_cons
##  [6] ATGACATTTACTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-04_cons
##  [7] ATGACATTCACTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-15_cons
##  [8] ATGACATTCACTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC BH66/21-17_cons
##  [9] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTTACTATGGGAGC MF326990
## [10] ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTTACTATGGGAGC MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] ATGACTTTTGTGCACTTTGAGAGCACGAACAGAGTTGCACTCACTATGGGAGC ON844087
##  Con ATGACATTTATTCATTTTGAGAGTACAAACAAGGTCGCACTCACTATGGGAGC Consensus 
## 
##      aln (14311..14363)                                    names
##  [1] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-01_cons
##  [2] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-06_cons
##  [3] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-03_cons
##  [4] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-05_cons
##  [5] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-02_cons
##  [6] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-04_cons
##  [7] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-15_cons
##  [8] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA BH66/21-17_cons
##  [9] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA MF326990
## [10] GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] AGTAGTCGCGCTCCTTTGGGGGGTGTACTCGGCTATAGAAACCTGGAAATTCA ON844087
##  Con GGTGATTGCTCTCCTCTGGGGGGTGTATTCAGCCATTGAAACCTGGAGATTCA Consensus 
## 
##      aln (14364..14416)                                    names
##  [1] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-01_cons
##  [2] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-06_cons
##  [3] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-03_cons
##  [4] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-05_cons
##  [5] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-02_cons
##  [6] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-04_cons
##  [7] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-15_cons
##  [8] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT BH66/21-17_cons
##  [9] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT MF326990
## [10] TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT MZ423533
## [11] ----------------------------------------------------- BH66/21-11_cons
## [12] TCACTTCCAGATGCCGTTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT ON844087
##  Con TCACCTCCAGATGCCGGTTGTGCTTGCTAGGCCGCAAGTACATTCTGGCCCCT Consensus 
## 
##      aln (14417..14469)                                    names
##  [1] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-01_cons
##  [2] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-06_cons
##  [3] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-03_cons
##  [4] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-05_cons
##  [5] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-02_cons
##  [6] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-04_cons
##  [7] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-15_cons
##  [8] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA BH66/21-17_cons
##  [9] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA MF326990
## [10] GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA MZ423533
## [11] ------CACGTTGAGAGTGCCGCAGGCTTTCATCCGATTGCGGCAAGTGATAA BH66/21-11_cons
## [12] GCCCACCACGTTGAGAGTGCCGCAGGCTTTCATCCGATTGCGGCAAGTGATAA ON844087
##  Con GCCCACCACGTTGAAAGTGTCGCAGGCTTTCATCCGATAACGGCAAATGATAA Consensus 
## 
##      aln (14470..14522)                                    names
##  [1] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-01_cons
##  [2] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-06_cons
##  [3] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-03_cons
##  [4] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-05_cons
##  [5] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-02_cons
##  [6] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG BH66/21-04_cons
##  [7] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACATTGG BH66/21-15_cons
##  [8] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACATTGG BH66/21-17_cons
##  [9] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG MF326990
## [10] CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG MZ423533
## [11] CCACGCATTTGTCGTCCGGCGTCCCGGTTCCACTACGGTTAACGGCACACTGG BH66/21-11_cons
## [12] CCACGCATTTGTCGTCCGGCGTCCCGGTTCCACTACGGTTAACGGCACATTGG ON844087
##  Con CCACGCATTTGTCGTCCGGCGTCCCGGCTCCACTACGGTCAACGGCACACTGG Consensus 
## 
##      aln (14523..14575)                                    names
##  [1] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-01_cons
##  [2] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-06_cons
##  [3] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-03_cons
##  [4] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-05_cons
##  [5] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-02_cons
##  [6] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-04_cons
##  [7] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-15_cons
##  [8] TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA BH66/21-17_cons
##  [9] TGCCCGGGTTGAAAAGCCTCGTGTTGGGTGGCAGAAGAGCTGTTAAACGAGGA MF326990
## [10] TGCCCGGGTTGAAAAGCCTCGTGTTGGGTGGCAGAAGAGCTGTTAAACGAGGA MZ423533
## [11] TGCCCGGGTTGAAAAGCCTCGTGTTGGGTGGCAGAAGAGCTGTCAAGCGGGGA BH66/21-11_cons
## [12] TGCCCGGGTTGAAAAGCCTCGTGTTGGGTGGCAGAAGAGCTGTCAAGCGGGGA ON844087
##  Con TGCCCGGGTTGAAAAGCCTCGTGTTGGGAGGCAGAAGAGCTGTTAAACGAGGA Consensus 
## 
##      aln (14576..14628)                                    names
##  [1] GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-01_cons
##  [2] GTGGTGAACCTCGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-06_cons
##  [3] GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-03_cons
##  [4] GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-05_cons
##  [5] GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-02_cons
##  [6] GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-04_cons
##  [7] GTGGTGAACCTTGTTAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-15_cons
##  [8] GTGGTGAACCTTGTTAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA BH66/21-17_cons
##  [9] GTGGTGAACCTTGTTAAATATGCCAAATAACAACGGCAGACAGCAAAATAAAA MF326990
## [10] GTGGTGAACCTTGTTAAATATGCCAAATAACAACGGCAGACAGCAAAATAAAA MZ423533
## [11] GTGGTAAACCTCGTCAAATATGCCAAATAACAACGGCAGGCAGCTGAAGAAAA BH66/21-11_cons
## [12] GTGGTAAACCTCGTTAAATATGCCAAATAACAACGGCAGGCAGCAGAAGAAAA ON844087
##  Con GTGGTGAACCTTGTCAAATATGCCAAATAACAACGGCAGACAGCAGAATAAAA Consensus 
## 
##      aln (14629..14681)                                    names
##  [1] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-01_cons
##  [2] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-06_cons
##  [3] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-03_cons
##  [4] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-05_cons
##  [5] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-02_cons
##  [6] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-04_cons
##  [7] GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-15_cons
##  [8] GGAAGGGGGATGGCCAGCCGGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT BH66/21-17_cons
##  [9] AGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT MF326990
## [10] AGAAGGGGGGTGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT MZ423533
## [11] AGAAAGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAAATGTTGGGTAGGATC BH66/21-11_cons
## [12] AGAAAGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAAATGTTGGGTAGGATC ON844087
##  Con GGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGTTGGGCAAGATT Consensus 
## 
##      aln (14682..14734)                                    names
##  [1] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-01_cons
##  [2] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-06_cons
##  [3] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-03_cons
##  [4] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-05_cons
##  [5] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-02_cons
##  [6] ATTGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-04_cons
##  [7] ATCGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-15_cons
##  [8] ATCGCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA BH66/21-17_cons
##  [9] ATCGCCCAACAGAGCCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA MF326990
## [10] ATCGCCCAACAGAGCCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA MZ423533
## [11] ATCGCCCAGCAAAACCAGTCCAGAGGTAAGGGACCGGGGAGGAGGAATAAGAA BH66/21-11_cons
## [12] ATCGCCCAGCAAAACCAGTCCAGAGGTAAGGGACCGGGGAAGAGGAATAAGAA ON844087
##  Con AT?GCCCAACAGAGTCAGTCCAGAGGCAAGGGACCGGGGAAGAAGAATAAGAA Consensus 
## 
##      aln (14735..14787)                                    names
##  [1] TAGAAACCCGGAGAAGCCCTATTTTCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-01_cons
##  [2] TAGAAACCCGGAGAAGCCCTATTTTCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-06_cons
##  [3] TAGAAACCCGGAGAAGCCCTATTTTCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-03_cons
##  [4] TAGAAACCCGGAGAAGCCCTATTTCCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-05_cons
##  [5] TAGAAACCCGGAGAAGCCCTATTTTCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-02_cons
##  [6] TAGAAACCCGGAGAAGCCCTATTTTCCTCTAGCGACTGAAGATGACGTCAGAC BH66/21-04_cons
##  [7] TAGAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGGC BH66/21-15_cons
##  [8] TAGAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGGC BH66/21-17_cons
##  [9] TAGAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGAC MF326990
## [10] TAGAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGAC MZ423533
## [11] GAAAAGCCCGGAGAAGCCCCATTTTCCTCTTGCGACTGAGGATGACGTCAGAC BH66/21-11_cons
## [12] GAAAAGCCCGGAGAAGCCCCATTTTCCTCTTGCGACTGAGGATGACGTCAGAC ON844087
##  Con TAGAAACCCGGAGAAGCCC?ATTTTCCTCTAGCGACTGAAGATGACGTCAGAC Consensus 
## 
##      aln (14788..14840)                                    names
##  [1] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-01_cons
##  [2] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-06_cons
##  [3] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-03_cons
##  [4] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-05_cons
##  [5] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-02_cons
##  [6] ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC BH66/21-04_cons
##  [7] ATCACTTCACCCCTAGTGAACGACAATTGTGCTTGTCGTCAATCCGGACTGCC BH66/21-15_cons
##  [8] ATCACTTCACCCCTAGTGAACGACAATTGTGCTTGTCGTCAATCCGGATTGCC BH66/21-17_cons
##  [9] ATCACTTTACCCCCAGTGAGCGACAATTGTGTCTGTCGTCAATCCGGACTGCC MF326990
## [10] ATCACTTTACCCCCAGTGAGCGACAATTGTGTCTGTCGTCAATCCGGACTGCC MZ423533
## [11] ATCACTTTTCCCCTAGTGAGCGGCAATTGTGCTTGTCGTCAATCCAGACTGCC BH66/21-11_cons
## [12] ATCACTTTTCCCCTAGTGAGCGGCAATTGTGTTTGTCGTCAATCCAGACTGCC ON844087
##  Con ATCACTTTACCCCTAGTGAACGACAATTGTGTCTGTCGTCAATCCGGACTGCC Consensus 
## 
##      aln (14841..14893)                                    names
##  [1] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGACTCAGGGAGAATAAGTTA BH66/21-01_cons
##  [2] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGACTCAGGGAGAATAAGTTA BH66/21-06_cons
##  [3] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGACTCAGGGAGAATAAGTTA BH66/21-03_cons
##  [4] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGACTCAGGGAGAATAAGTTA BH66/21-05_cons
##  [5] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGAATCAGGGAGAATAAGTTA BH66/21-02_cons
##  [6] TTTAACCAAGGCGCTGGAACTTGTACCCTGTTAGACTCAGGGAGAATAAGTTA BH66/21-04_cons
##  [7] TTTAACCAAGGCGCTGGAACTTGTACCCTGTCAGAATCAGGGAGAATAAGTTA BH66/21-15_cons
##  [8] TTTAACCAAGGCGCTGGAACTTGTACCCTGTCAGATTCAGGGAGAATAAGTTA BH66/21-17_cons
##  [9] TTTAACCAAGGCGCTGGAACTTGTACCCTGTCAGACTCAGGGAGAATAAGTTA MF326990
## [10] TTTAACCAAGGCGCTGGAACTTGTACCCTGTCAGACTCAGGGAGAATAAGTTA MZ423533
## [11] TTTAATCAAGGCGCTGGAACTTGTACCCTGTCGGATTCGGGGAGAATAAGTTA BH66/21-11_cons
## [12] TTTAATCAAGGCGCTGGAACTTGTACCCTGTCGGATTCAGGGAGAATAAGTTA ON844087
##  Con TTTAACCAAGGCGCTGGAACTTGTACCCTGT?AGACTCAGGGAGAATAAGTTA Consensus 
## 
##      aln (14894..14946)                                    names
##  [1] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-01_cons
##  [2] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-06_cons
##  [3] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-03_cons
##  [4] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-05_cons
##  [5] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-02_cons
##  [6] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA BH66/21-04_cons
##  [7] CACTGTGGAGTTCAGTCTGCCTACTCATCACACTGTGCGCTTGATTCGCGCCA BH66/21-15_cons
##  [8] CACTGTGGAGTTCAGTCTGCCTACTCATCACACTGTGCGCTTGATTCGCGCCA BH66/21-17_cons
##  [9] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGTGCCA MF326990
## [10] CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA MZ423533
## [11] CACTGTGGAGTTCAGTTTGCCTACGCATCATACTGTGCGCCTAATTCGCGTTA BH66/21-11_cons
## [12] CACTGTGGAGTTCAGTTTGCCTACGCATCATACTGTGCGCCTAATTCGCGTTA ON844087
##  Con CACTGTGGAGTTCAGTCTGCCTACTCGTCATACTGTGCGCTTGATTCGCGCCA Consensus 
## 
##      aln (14947..14999)                                    names
##  [1] CAACGCCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-01_cons
##  [2] CAGCGCCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-06_cons
##  [3] CAGCGCCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-03_cons
##  [4] CAGCGCCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-05_cons
##  [5] CAGCGCCACCATCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-02_cons
##  [6] CAGCGCCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-04_cons
##  [7] CAGCGTCACCCTCAGCGTGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-15_cons
##  [8] CAGCGTCACCCTCAGCGTGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG BH66/21-17_cons
##  [9] CAGCGTCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG MF326990
## [10] CAGCGTCACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG MZ423533
## [11] CAGCATCACCCTCAGCATGATGGGCTGGCATTCTTGAGACATCCCAGTGTTTG BH66/21-11_cons
## [12] CAGCATCACCCTCAGCATGATGGGCTGGCATTCTTGAGACATCCCAGTGTTTG ON844087
##  Con CAGCG?CACCCTCAGCATGATGAGCTGGCATTCTTGAGACATCCCAGTGCCTG Consensus 
## 
##      aln (15000..15052)                                    names
##  [1] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-01_cons
##  [2] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-06_cons
##  [3] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-03_cons
##  [4] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-05_cons
##  [5] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-02_cons
##  [6] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-04_cons
##  [7] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-15_cons
##  [8] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA BH66/21-17_cons
##  [9] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA MF326990
## [10] AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA MZ423533
## [11] AATTGGAAGAATGTGTGGTGAATGGCACTGATTGATATTGTGCCTCTAAGTCA BH66/21-11_cons
## [12] AATTGGAAGAATGTGTGGTGAATGGCACTGATTGATATTGTGCCTCTAAGTCA ON844087
##  Con AATTGGAAGAATGAGTGGTGAATGGCACTGATTGACATTGTGCCTCTAAGTCA Consensus 
## 
##      aln (15053..15105)                                    names
##  [1] CC--------------------------------------------------- BH66/21-01_cons
##  [2] CC--------------------------------------------------- BH66/21-06_cons
##  [3] CC--------------------------------------------------- BH66/21-03_cons
##  [4] CC--------------------------------------------------- BH66/21-05_cons
##  [5] CC--------------------------------------------------- BH66/21-02_cons
##  [6] CC--------------------------------------------------- BH66/21-04_cons
##  [7] CC--------------------------------------------------- BH66/21-15_cons
##  [8] CC--------------------------------------------------- BH66/21-17_cons
##  [9] CCTATTCAATTAGGGCGACCGTATGGGGGTAATATTTAATTGGCGAGAACCAT MF326990
## [10] CCTATTCAATTAGGGCGACCGTATGGGGGTAATATTTAATTGGCGAGAACCAT MZ423533
## [11] CC--------------------------------------------------- BH66/21-11_cons
## [12] CCTATTCAATTAGGGCGACCGTATGGGGGTAAGATTTAATTGGCGTGAACCAT ON844087
##  Con CC--------------------------------------------------- Consensus 
## 
##      aln (15106..15156)                                  names
##  [1] --------------------------------------------------- BH66/21-01_cons
##  [2] --------------------------------------------------- BH66/21-06_cons
##  [3] --------------------------------------------------- BH66/21-03_cons
##  [4] --------------------------------------------------- BH66/21-05_cons
##  [5] --------------------------------------------------- BH66/21-02_cons
##  [6] --------------------------------------------------- BH66/21-04_cons
##  [7] --------------------------------------------------- BH66/21-15_cons
##  [8] --------------------------------------------------- BH66/21-17_cons
##  [9] GCGGCYGAAATY--------------------------------------- MF326990
## [10] GCG------------------------------------------------ MZ423533
## [11] --------------------------------------------------- BH66/21-11_cons
## [12] GCGGCCGAAATTAAAAAAAAAAAAAAAAAATCCTCTCCTTCTATTCCATGC ON844087
##  Con --------------------------------------------------- Consensus

msa(prokDNA, "ClustalW")

## use default substitution matrix

## CLUSTAL 2.1  
## 
## Call:
##    msa(prokDNA, "ClustalW")
## 
## MsaDNAMultipleAlignment with 12 rows and 15156 columns
##      aln                                                   names
##  [1] -------------------------...------------------------- BH66/21-01_cons
##  [2] -------------------------...------------------------- BH66/21-06_cons
##  [3] -------------------------...------------------------- BH66/21-03_cons
##  [4] -------------------------...------------------------- BH66/21-05_cons
##  [5] -------------------------...------------------------- BH66/21-02_cons
##  [6] -------------------------...------------------------- BH66/21-04_cons
##  [7] -------------------------...------------------------- BH66/21-15_cons
##  [8] -------------------------...------------------------- BH66/21-17_cons
##  [9] -------ATGACGTATAGGTGTTGG...------------------------- MF326990
## [10] -------------------------...------------------------- MZ423533
## [11] -------------------------...------------------------- BH66/21-11_cons
## [12] CTGCTTTCATGACGTATAGGTGTTG...AAAATCCTCTCCTTCTATTCCATGC ON844087
##  Con -------------------------...------------------------- Consensus

msa(prokDNA, "ClustalOmega")

## using Gonnet

## ClustalOmega 1.2.0 
## 
## Call:
##    msa(prokDNA, "ClustalOmega")
## 
## MsaDNAMultipleAlignment with 12 rows and 15157 columns
##      aln                                                   names
##  [1] -------------------------...------------------------- BH66/21-11_cons
##  [2] CTGCTTTCATGACGTATAGGTGTTG...AAAATCCTCTCCTTCTATTCCATGC ON844087
##  [3] -------------------------...------------------------- BH66/21-15_cons
##  [4] -------------------------...------------------------- BH66/21-17_cons
##  [5] -------------------------...------------------------- BH66/21-04_cons
##  [6] -------------------------...------------------------- BH66/21-02_cons
##  [7] -------------------------...------------------------- BH66/21-05_cons
##  [8] -------------------------...------------------------- BH66/21-06_cons
##  [9] -------------------------...------------------------- BH66/21-01_cons
## [10] -------------------------...------------------------- BH66/21-03_cons
## [11] --------ATGACGTATAGGTGTTG...------------------------- MF326990
## [12] -------------------------...------------------------- MZ423533
##  Con -------------------------...------------------------- Consensus

msa(prokDNA, "Muscle")

## MUSCLE 3.8.31   
## 
## Call:
##    msa(prokDNA, "Muscle")
## 
## MsaDNAMultipleAlignment with 12 rows and 15157 columns
##      aln                                                   names
##  [1] -------------------------...------------------------- BH66/21-11_cons
##  [2] CTGCTTTCATGACGTATAGGTGTTG...AAAATCCTCTCCTTCTATTCCATGC ON844087
##  [3] -------------------------...------------------------- BH66/21-17_cons
##  [4] -------------------------...------------------------- BH66/21-15_cons
##  [5] -------------------------...------------------------- BH66/21-02_cons
##  [6] -------------------------...------------------------- BH66/21-04_cons
##  [7] -------------------------...------------------------- BH66/21-05_cons
##  [8] -------------------------...------------------------- BH66/21-01_cons
##  [9] -------------------------...------------------------- BH66/21-06_cons
## [10] -------------------------...------------------------- BH66/21-03_cons
## [11] -------------------------...------------------------- MZ423533
## [12] --------ATGACGTATAGGTGTTG...------------------------- MF326990
##  Con -------------------------...------------------------- Consensus

# Se convierte la alineación al formato seqinr
prokAligned1 <- msaConvert(prokAligned, type = "seqinr::alignment")

# Se genera una matriz de distancia usando seqinr con el paquete ape
prokdist <- dist.alignment(prokAligned1, "identity")

# Se puede ver la matriz de distancia, escriba
prokdist

##                 BH66/21-01_cons BH66/21-06_cons BH66/21-03_cons BH66/21-05_cons
## BH66/21-06_cons      0.03498557                                                
## BH66/21-03_cons      0.02473853      0.02473853                                
## BH66/21-05_cons      0.05490970      0.05490970      0.04483358                
## BH66/21-02_cons      0.05531705      0.05531705      0.04947707      0.06340426
## BH66/21-04_cons      0.05531705      0.05531705      0.04947707      0.06340426
## BH66/21-15_cons      0.14847252      0.14847252      0.14505890      0.14177624
## BH66/21-17_cons      0.14843121      0.14843121      0.14635515      0.15203808
## MF326990             0.12614227      0.12614227      0.12369267      0.13450075
## MZ423533             0.12858455      0.12858455      0.12618089      0.13071124
## BH66/21-11_cons      0.31321122      0.30811801      0.31067505      0.31321122
## ON844087             0.35431035      0.35246987      0.35333695      0.34727945
##                 BH66/21-02_cons BH66/21-04_cons BH66/21-15_cons BH66/21-17_cons
## BH66/21-06_cons                                                                
## BH66/21-03_cons                                                                
## BH66/21-05_cons                                                                
## BH66/21-02_cons                                                                
## BH66/21-04_cons      0.04947707                                                
## BH66/21-15_cons      0.14505890      0.14505890                                
## BH66/21-17_cons      0.14424921      0.14211206      0.07078150                
## MF326990             0.12369267      0.12369267      0.16448133      0.14843121
## MZ423533             0.12618089      0.12618089      0.16140664      0.15052470
## BH66/21-11_cons      0.31321122      0.31067505      0.30811801      0.31067505
## ON844087             0.35420191      0.35333695      0.34385531      0.35072926
##                   MF326990   MZ423533 BH66/21-11_cons
## BH66/21-06_cons                                      
## BH66/21-03_cons                                      
## BH66/21-05_cons                                      
## BH66/21-02_cons                                      
## BH66/21-04_cons                                      
## BH66/21-15_cons                                      
## BH66/21-17_cons                                      
## MF326990                                             
## MZ423533        0.10532170                           
## BH66/21-11_cons 0.30031629 0.30031629                
## ON844087        0.32819475 0.31844102      0.09743547

# Ahora se puede usar esta matriz para construir un árbol filogenético de distancia básica.

# Se genera un Arbol de Distancia Neighbor-Joining
prokTree <- nj(prokdist)

# Se puede ver el árbol con diferentes comandos
plot(prokTree)

p <- ggtree(prokTree) + 
  geom_nodepoint(color="#b5e521", alpha=1/4, size=10) 
p + geom_tiplab(size=3, color="purple")

ggtree(prokTree, layout="circular") + geom_tiplab(aes(angle=angle), color='blue')

ggtree(prokTree) + geom_tiplab(as_ylab=TRUE, color='firebrick')

# También se puede generar datos filogenéticos, o phyDat, para construir un árbol de parsimonia.
# Se puede utilizar msa para crear los datos correctos
prokAligned2 <- msaConvert(prokAligned, type = "phangorn::phyDat")
# Una vez generados los datos se puede alimentar en pratchet, que es la rutina en phangorn que genera árboles de parsimonia
ParsTree <- pratchet(prokAligned2)

## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
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## [1] "Best pscore so far: 1731"
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## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
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## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"
## [1] "Best pscore so far: 1731"

# Ahora se tiene una variable llamada ParsTree
plot(ParsTree)

# La máxima verosimilitud requiere de alto poder computacional, pero también puede proporcionar reconstrucciones más precisas que los enfoques de distancia "convencionales".

# El primer paso en la máxima verosimilitud es calcular la probabilidad utilizando la función pml.
fit <- pml(prokTree, prokAligned2)

# Luego se tratar de mejorar el arbol usando modelo Jukes-Cantor
# Se ejecuta optim.pml y optimizar el árbol que se creó  
fitJC <- optim.pml(fit, model = "JC", rearrangement = "stochastic")

## optimize edge weights:  -31481.13 --> -29200 
## optimize edge weights:  -29200 --> -29196.18 
## optimize topology:  -29196.18 --> -29191.07  NNI moves:  3 
## optimize edge weights:  -29191.07 --> -29191.07 
## optimize topology:  -29191.07 --> -29191.06  NNI moves:  0 
## optimize topology:  -29419.46 --> -29191.07  NNI moves:  4 
## [1] "Ratchet iteration  1 , best pscore so far: -29191.0648995121"
## optimize topology:  -29401.43 --> -29191.07  NNI moves:  4 
## [1] "Ratchet iteration  2 , best pscore so far: -29191.0648995121"
## optimize topology:  -29517.29 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  3 , best pscore so far: -29191.0648017751"
## optimize topology:  -29305.43 --> -29191.07  NNI moves:  3 
## [1] "Ratchet iteration  4 , best pscore so far: -29191.0648017751"
## optimize topology:  -29509.68 --> -29191.06  NNI moves:  6 
## [1] "Ratchet iteration  5 , best pscore so far: -29191.0646968757"
## optimize topology:  -29440.34 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  6 , best pscore so far: -29191.0646968757"
## optimize topology:  -29468.99 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  7 , best pscore so far: -29191.0646968757"
## optimize topology:  -29230.09 --> -29191.06  NNI moves:  2 
## [1] "Ratchet iteration  8 , best pscore so far: -29191.0646912175"
## optimize topology:  -29324.14 --> -29226.36  NNI moves:  3 
## [1] "Ratchet iteration  9 , best pscore so far: -29191.0646912175"
## optimize topology:  -29504.53 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  10 , best pscore so far: -29191.0646912175"
## optimize topology:  -29303.94 --> -29191.07  NNI moves:  2 
## [1] "Ratchet iteration  11 , best pscore so far: -29191.0646912175"
## optimize topology:  -29227.03 --> -29227.03  NNI moves:  0 
## [1] "Ratchet iteration  12 , best pscore so far: -29191.0646912175"
## optimize topology:  -29426.03 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  13 , best pscore so far: -29191.0646912175"
## optimize topology:  -29466.72 --> -29239.97  NNI moves:  3 
## [1] "Ratchet iteration  14 , best pscore so far: -29191.0646912175"
## optimize topology:  -29508.14 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  15 , best pscore so far: -29191.0646912175"
## optimize topology:  -29262.98 --> -29191.07  NNI moves:  3 
## [1] "Ratchet iteration  16 , best pscore so far: -29191.0646912175"
## optimize topology:  -29281.74 --> -29191.06  NNI moves:  3 
## [1] "Ratchet iteration  17 , best pscore so far: -29191.0646904422"
## optimize topology:  -29517.29 --> -29191.06  NNI moves:  7 
## [1] "Ratchet iteration  18 , best pscore so far: -29191.0646904422"
## optimize topology:  -29195.57 --> -29191.07  NNI moves:  2 
## [1] "Ratchet iteration  19 , best pscore so far: -29191.0646904422"
## optimize topology:  -29252.59 --> -29191.06  NNI moves:  3 
## [1] "Ratchet iteration  20 , best pscore so far: -29191.0646904422"
## optimize topology:  -29351.68 --> -29191.06  NNI moves:  7 
## [1] "Ratchet iteration  21 , best pscore so far: -29191.0646904422"
## optimize topology:  -29236 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  22 , best pscore so far: -29191.0646904422"
## optimize topology:  -29236.88 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  23 , best pscore so far: -29191.0646904422"
## optimize topology:  -29230.09 --> -29191.06  NNI moves:  2 
## [1] "Ratchet iteration  24 , best pscore so far: -29191.0646904422"
## optimize topology:  -29244.55 --> -29191.06  NNI moves:  9 
## [1] "Ratchet iteration  25 , best pscore so far: -29191.0646757121"
## optimize topology:  -29242.7 --> -29227.03  NNI moves:  1 
## [1] "Ratchet iteration  26 , best pscore so far: -29191.0646757121"
## optimize topology:  -29504.54 --> -29191.06  NNI moves:  6 
## [1] "Ratchet iteration  27 , best pscore so far: -29191.0646757121"
## optimize topology:  -29622 --> -29191.06  NNI moves:  7 
## [1] "Ratchet iteration  28 , best pscore so far: -29191.0646757121"
## optimize topology:  -29472.37 --> -29191.07  NNI moves:  4 
## [1] "Ratchet iteration  29 , best pscore so far: -29191.0646757121"
## optimize topology:  -29469.14 --> -29191.06  NNI moves:  6 
## [1] "Ratchet iteration  30 , best pscore so far: -29191.0646757121"
## optimize topology:  -29401.43 --> -29191.07  NNI moves:  4 
## [1] "Ratchet iteration  31 , best pscore so far: -29191.0646757121"
## optimize topology:  -29465.37 --> -29191.06  NNI moves:  3 
## [1] "Ratchet iteration  32 , best pscore so far: -29191.0646757121"
## optimize topology:  -29487.79 --> -29191.06  NNI moves:  9 
## [1] "Ratchet iteration  33 , best pscore so far: -29191.0646757121"
## optimize topology:  -29450.43 --> -29226.36  NNI moves:  4 
## [1] "Ratchet iteration  34 , best pscore so far: -29191.0646757121"
## optimize topology:  -29230.09 --> -29227.03  NNI moves:  1 
## [1] "Ratchet iteration  35 , best pscore so far: -29191.0646757121"
## optimize topology:  -29225.59 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  36 , best pscore so far: -29191.0646757121"
## optimize topology:  -29529.02 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  37 , best pscore so far: -29191.0646757121"
## optimize topology:  -29383.27 --> -29191.07  NNI moves:  9 
## [1] "Ratchet iteration  38 , best pscore so far: -29191.0646757121"
## optimize topology:  -29440.56 --> -29226.71  NNI moves:  2 
## [1] "Ratchet iteration  39 , best pscore so far: -29191.0646757121"
## optimize topology:  -29191.62 --> -29191.06  NNI moves:  2 
## [1] "Ratchet iteration  40 , best pscore so far: -29191.0646757121"
## optimize topology:  -29508.78 --> -29191.06  NNI moves:  7 
## [1] "Ratchet iteration  41 , best pscore so far: -29191.0646757121"
## optimize topology:  -29303.94 --> -29191.06  NNI moves:  3 
## [1] "Ratchet iteration  42 , best pscore so far: -29191.0646757121"
## optimize topology:  -29225.59 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  43 , best pscore so far: -29191.0646757121"
## optimize topology:  -29479.53 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  44 , best pscore so far: -29191.0646757121"
## optimize topology:  -29309.48 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  45 , best pscore so far: -29191.0646757121"
## optimize topology:  -29395.51 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  46 , best pscore so far: -29191.0646757121"
## optimize topology:  -29316.94 --> -29191.07  NNI moves:  4 
## [1] "Ratchet iteration  47 , best pscore so far: -29191.0646757121"
## optimize topology:  -29493.11 --> -29191.06  NNI moves:  5 
## [1] "Ratchet iteration  48 , best pscore so far: -29191.0646757121"
## optimize topology:  -29397.19 --> -29191.06  NNI moves:  4 
## [1] "Ratchet iteration  49 , best pscore so far: -29191.0646757121"
## optimize topology:  -29232.46 --> -29191.06  NNI moves:  3 
## [1] "Ratchet iteration  50 , best pscore so far: -29191.0646757121"
## optimize edge weights:  -29191.06 --> -29191.06 
## optimize topology:  -29191.06 --> -29191.06  NNI moves:  0

# Ahora se puede ver el árbol de máxima verosimilitud 
plot(fitJC)

# Adicional se puede agregar Bootstrap al arbol ML optimizado, se puede utilizar el árbol de máxima verosimilitud Jukes-Cantor.

bootstrapped <- bootstrap.pml(fitJC, bs = 100, optNni = TRUE, multicore = TRUE, control = pml.control(trace=0))

plotBS(midpoint(fitJC$tree), bootstrapped, p = 50, type = "p")

Bibliografía
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Alvarez, J., Valdes-Donoso, P., Tousignant, S., Alkhamis, M., Morrison, R., & Perez, A. (2016). Novel analytic tools for the study of porcine reproductive and respiratory syndrome virus (PRRSv) in endemic settings: Lessons learned in the U.S. Porcine Health Management, 2(1), 1–9. https://doi.org/10.1186/S40813-016-0019-0/FIGURES/1
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Forsberg, R. (2005). Divergence Time of Porcine Reproductive and Respiratory Syndrome Virus Subtypes. Molecular Biology and Evolution, 22(11), 2131–2134. https://doi.org/10.1093/MOLBEV/MSI208 Gao, Z. Q., Guo, X., & Yang, H. C. (2004). Genomic characterization of two Chinese isolates of Porcine respiratory and reproductive syndrome virus. Archives of Virology, 149(7), 1341–1351. https://doi.org/10.1007/S00705-004-0292-0/METRICS
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Lanfear, R., Calcott, B., Ho, S. Y. W., & Guindon, S. (2012). PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses. Molecular Biology and Evolution, 29(6), 1695–1701. https://doi.org/10.1093/MOLBEV/MSS020
Meng, X. J., Paul, P. S., Halbur, P. G., & Lum, M. A. (1995). Phylogenetic analyses of the putative M (ORF 6) and N (ORF 7) genes of porcine reproductive and respiratory syndrome virus (PRRSV): implication for the existence of two genotypes of PRRSV in the U.S.A. and Europe. Archives of Virology, 140(4), 745. https://doi.org/10.1007/BF01309962
Nelsen, C. J., Murtaugh, M. P., & Faaberg, K. S. (1999). Porcine Reproductive and Respiratory Syndrome Virus Comparison: Divergent Evolution on Two Continents. Journal of Virology, 73(1), 270. https://doi.org/10.1128/JVI.73.1.270-280.1999
Rossow, K. D., Bautista, E. M., Goyal, S. M., Collins, J. E., Molitor, T. W., Morrison, R. B., Murtaugh, M. P., & Benfield, D. A. (1994). Experimental porcine reproductive and respiratory syndrome virus infection in one-, four-, and 10-week-old pigs. J Vet Diagn Invest, 6(1), 3–12. https://doi.org/10.1177/104063879400600102
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Terpstra, C., Wensvoort, G., & Pol, J. M. (1991). Experimental reproduction of porcine epidemic abortion and respiratory syndrome (mystery swine disease) by infection with Lelystad virus: Koch’s postulates fulfilled. The Veterinary Quarterly, 13(3), 131–136. https://doi.org/10.1080/01652176.1991.9694297