Fernaldo R. Winnerdy
11th October, 2018
Nuclear Magnetic Resonance (NMR) is a biophysical technique that is frequently used to determine the structure and interactions of biomolecules. Generally, each nucleus will generate a signal in a form of a Lorentzian peak. This Lorentzian peak carries the information of the corresponding nucleus based on its x-axis position as well as its linewidth.
A Lorentzian curve is a near-gaussian curve described by the following equation:
\[ L(x) = \frac{\frac{1}{2}\Gamma}{(x - x_0)^2 + (\frac{1}{2} \Gamma)} \]
where \( Gamma \) is the lineshape and \( x_0 \) is the central position.
A normalized Lorentzian curve has an additional factor of \( 1/\pi \) in front to control the area under the curve to be always equal to 1:
\[ L(x) = \frac{1}{\pi} \frac{\frac{1}{2}\Gamma}{(x - x_0)^2 + (\frac{1}{2} \Gamma)} \]
The concept of the application is a visualization on how the signal strength (amplitude) depends on the linewidth. Below are some demonstrations on the amplitude values (\( L(x_0) \)), given a series of linewidth values.
linewidth <- c(1:5)
amplitude <- (1/pi)*(linewidth/2)/(linewidth/2)^2
cbind(linewidth, amplitude)
linewidth amplitude
[1,] 1 0.6366198
[2,] 2 0.3183099
[3,] 3 0.2122066
[4,] 4 0.1591549
[5,] 5 0.1273240
The amplitude decreases with increasing linewidth
Below are two comparison plots on narrow linewidth and wide linewidth signals